1,155 research outputs found
High-fidelity state detection and tomography of a single ion Zeeman qubit
We demonstrate high-fidelity Zeeman qubit state detection in a single trapped
88 Sr+ ion. Qubit readout is performed by shelving one of the qubit states to a
metastable level using a narrow linewidth diode laser at 674 nm followed by
state-selective fluorescence detection. The average fidelity reached for the
readout of the qubit state is 0.9989(1). We then measure the fidelity of state
tomography, averaged over all possible single-qubit states, which is 0.9979(2).
We also fully characterize the detection process using quantum process
tomography. This readout fidelity is compatible with recent estimates of the
detection error-threshold required for fault-tolerant computation, whereas
high-fidelity state tomography opens the way for high-precision quantum process
tomography
Emergence of a measurement basis in atom-photon scattering
The process of quantum measurement has been a long standing source of debate.
A measurement is postulated to collapse a wavefunction onto one of the states
of a predetermined set - the measurement basis. This basis origin is not
specified within quantum mechanics. According to the theory of decohernce, a
measurement basis is singled out by the nature of coupling of a quantum system
to its environment. Here we show how a measurement basis emerges in the
evolution of the electronic spin of a single trapped atomic ion due to
spontaneous photon scattering. Using quantum process tomography we visualize
the projection of all spin directions, onto this basis, as a photon is
scattered. These basis spin states are found to be aligned with the scattered
photon propagation direction. In accordance with decohernce theory, they are
subjected to a minimal increase in entropy due to the photon scattering, while,
orthogonal states become fully mixed and their entropy is maximally increased.
Moreover, we show that detection of the scattered photon polarization measures
the spin state of the ion, in the emerging basis, with high fidelity. Lastly,
we show that while photon scattering entangles all superpositions of pointer
states with the scattered photon polarization, the measurement-basis states
themselves remain classically correlated with it. Our findings show that photon
scattering by atomic spin superpositions fulfils all the requirements from a
quantum measurement process
Proteasome Lid Bridges Mitochondrial Stress with Cdc53/Cullin1 NEDDylation Status
Cycles of Cdc53/Cullin1 rubylation (a.k.a NEDDylation) protect ubiquitin-E3 SCF (Skp1-Cullin1-F-box protein) complexes from self-destruction and play an important role in mediating the ubiquitination of key protein substrates involved in cell cycle progression, development, and survival. Cul1 rubylation is balanced by the COP9 signalosome (CSN), a multi-subunit derubylase that shows 1:1 paralogy to the 26 S proteasome lid. The turnover of SCF substrates and their relevance to various diseases is well studied, yet, the extent by which environmental perturbations influence Cul1 rubylation/derubylation cycles per se is still unclear. In this study, we show that the level of cellular oxidation serves as a molecular switch, determining Cullin1 rubylation/derubylation ratio. We describe a mutant of the proteasome lid subunit, Rpn11 that exhibits accumulated levels of Cullin1-Rub1 conjugates, a characteristic phenotype of csn mutants. By dissecting between distinct phenotypes of rpn11 mutants, proteasome and mitochondria dysfunction, we were able to recognize the high reactive oxygen species (ROS) production during the transition of cells into mitochondrial respiration, as a checkpoint of Cullin1 rubylation in a reversible manner. Thus, the study adds the rubylation cascade to the list of cellular pathways regulated by redox homeostasis
Microscopic description of light unstable nuclei with the stochastic variational method
The structure of the light proton and neutron rich nuclei is studied in a
microscopic multicluster model using the stochastic variational method. This
approach enables us to describe the weakly bound nature of these nuclei in a
consistent way. Applications for various nuclei Li, Be, B,
C, Be, B presented. The paper discusses the relation of
this model to other models as well as the possible extension for p and sd shell
nuclei.Comment: 11 pages, latex, no figures
Thiacetazone, an Antitubercular Drug that Inhibits Cyclopropanation of Cell Wall Mycolic Acids in Mycobacteria
Background. Mycolic acids are a complex mixture of branched, long-chain fatty acids, representing key components of the highly hydrophobic mycobacterial cell wall. Pathogenic mycobacteria carry mycolic acid sub-types that contain cyclopropane rings. Double bonds at specific sites on mycolic acid precursors are modified by the action of cyclopropane mycolic acid synthases (CMASs). The latter belong to a family of S-adenosyl-methionine-dependent methyl transferases, of which several have been well studied in Mycobacterium tuberculosis, namely, MmaA1 through A4, PcaA and CmaA2. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence of M. tuberculosis. While several antitubercular agents inhibit mycolic acid synthesis, to date, the CMASs have not been shown to be drug targets. Methodology/Principle Findings. We have employed various complementary approaches to show that the antitubercular drug, thiacetazone (TAC), and its chemical analogues, inhibit mycolic acid cyclopropanation. Dramatic changes in the content and ratio of mycolic acids in the vaccine strainMycobacterium bovis BCG, as well as in the related pathogenic speciesMycobacterium marinum were observed after treatment with the drugs. Combination of thin layer chromatography, mass spectrometry and Nuclear Magnetic Resonance (NMR) analyses of mycolic acids purified fromdrug-treated mycobacteria showed a significant loss of cyclopropanation in both the a- and oxygenated mycolate sub-types. Additionally, High-Resolution Magic Angle Spinning (HR-MAS) NMR analyses on whole cells was used to detect cell wall-associated mycolates and to quantify the cyclopropanation status of the cell envelope. Further, overexpression of cmaA2, mmaA2 or pcaA in mycobacteria partially reversed the effects of TAC and its analogue on mycolic acid cyclopropanation, suggesting that the drugs act directly on CMASs. Conclusions/Significance. This is a first report on them echanism of action of TAC, demonstrating the CMASs as its cellular targets in mycobacteria. The implications of this study may be important for the design of alternative strategies for tuberculosis treatment
(Il)Legitimisation of the role of the nation state: Understanding of and reactions to Internet censorship in Turkey
This study aims to explore Turkish citizen-consumers' understanding of and reactions to censorship of websites in Turkey by using in-depth interviews and online ethnography. In an environment where sites such as YouTube and others are increasingly being banned, the citizen-consumers' macro-level understanding is that such censorship is part of a wider ideological plan and their micro-level understanding is that their relationship with the wider global network is reduced, in the sense that they have trouble accessing full information on products, services and experiences. The study revealed that citizen-consumers engage in two types of resistance strategies against such domination by the state: using irony as passive resistance, and using the very same technology used by the state to resist its domination
A Conditional Yeast E1 Mutant Blocks the Ubiquitin–Proteasome Pathway and Reveals a Role for Ubiquitin Conjugates in Targeting Rad23 to the Proteasome
E1 ubiquitin activating enzyme catalyzes the initial step in all ubiquitin-dependent processes. We report the isolation of uba1-204, a temperature-sensitive allele of the essential Saccharomyces cerevisiae E1 gene, UBA1. Uba1-204 cells exhibit dramatic inhibition of the ubiquitin–proteasome system, resulting in rapid depletion of cellular ubiquitin conjugates and stabilization of multiple substrates. We have employed the tight phenotype of this mutant to investigate the role ubiquitin conjugates play in the dynamic interaction of the UbL/UBA adaptor proteins Rad23 and Dsk2 with the proteasome. Although proteasomes purified from mutant cells are intact and proteolytically active, they are depleted of ubiquitin conjugates, Rad23, and Dsk2. Binding of Rad23 to these proteasomes in vitro is enhanced by addition of either free or substrate-linked ubiquitin chains. Moreover, association of Rad23 with proteasomes in mutant and wild-type cells is improved upon stabilizing ubiquitin conjugates with proteasome inhibitor. We propose that recognition of polyubiquitin chains by Rad23 promotes its shuttling to the proteasome in vivo
Quantum control of Sr in a miniature linear Paul trap
We report on the construction and characterization of an apparatus for
quantum information experiments using Sr ions. A miniature linear
radio-frequency (rf) Paul trap was designed and built. Trap frequencies above 1
MHz in all directions are obtained with 50 V on the trap end-caps and less than
1 W of rf power. We encode a quantum bit (qubit) in the two spin states of the
electronic ground-state of the ion. We constructed all the necessary
laser sources for laser cooling and full coherent manipulation of the ions'
external and internal states. Oscillating magnetic fields are used for coherent
spin rotations. High-fidelity readout as well as a coherence time of 2.5 ms are
demonstrated. Following resolved sideband cooling the average axial vibrational
quanta of a single trapped ion is and a heating rate of
ms is measured.Comment: 8 pages,9 figure
Structure of the mirror nuclei Be and B in a microscopic cluster model
The structure of the mirror nuclei Be and B is studied in a
microscopic and three-cluster model
using a fully antisymmetrized 9-nucleon wave function. The two-nucleon
interaction includes central and spin-orbit components and the Coulomb
potential. The ground state of Be is obtained accurately with the
stochastic variational method, while several particle-unbound states of both
Be and B are investigated with the complex scaling method.The
calculation for Be supports the recent identification for the existence of
two broad states around 6.5 MeV, and predicts the and
states at about 4.5 MeV and 8 MeV, respectively. The
similarity of the calculated spectra of Be and B enables one to
identify unknown spins and parities of the B states. Available data on
electromagnetic moments and elastic electron scatterings are reproduced very
well. The enhancement of the 1 transition of the first excited state in
Be is well accounted for. The calculated density of Be is found to
reproduce the reaction cross section on a Carbon target. The analysis of the
beta decay of Li to Be clearly shows that the wave function of Be
must contain a small component that cannot be described by the simple model. This small component can be well accounted for by extending a
configuration space to include the distortion of the -particle to
and partitions.Comment: 24 page
A host transcriptional signature for presymptomatic detection of infection in humans exposed to influenza H1N1 or H3N2.
There is great potential for host-based gene expression analysis to impact the early diagnosis of infectious diseases. In particular, the influenza pandemic of 2009 highlighted the challenges and limitations of traditional pathogen-based testing for suspected upper respiratory viral infection. We inoculated human volunteers with either influenza A (A/Brisbane/59/2007 (H1N1) or A/Wisconsin/67/2005 (H3N2)), and assayed the peripheral blood transcriptome every 8 hours for 7 days. Of 41 inoculated volunteers, 18 (44%) developed symptomatic infection. Using unbiased sparse latent factor regression analysis, we generated a gene signature (or factor) for symptomatic influenza capable of detecting 94% of infected cases. This gene signature is detectable as early as 29 hours post-exposure and achieves maximal accuracy on average 43 hours (p = 0.003, H1N1) and 38 hours (p-value = 0.005, H3N2) before peak clinical symptoms. In order to test the relevance of these findings in naturally acquired disease, a composite influenza A signature built from these challenge studies was applied to Emergency Department patients where it discriminates between swine-origin influenza A/H1N1 (2009) infected and non-infected individuals with 92% accuracy. The host genomic response to Influenza infection is robust and may provide the means for detection before typical clinical symptoms are apparent
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