Wind conditions and ventilation in high-rise long street models

We regarded high-rise cities as obstacles and channels to wind. We first studied wind conditions and ventilations in idealized high-rise long street models experimentally and numerically with a constant street width (W = 30 mm), variable street heights (H = 2 W, 2.5W, 3W, 4W), variable street lengths (L = 47.4W, 79W, 333W, 667W) and a parallel approaching wind. The flow rates penetrating into windward entries are a little larger than the reference flow rate in the far upstream free flow through the same area with windward entries in all models. The stream-wise velocity decreases along the street as some air leaves upwardly across street roofs. Near the leeward entry, there is a downward flow which brings some air into the street and results in an accelerating process. In the neighborhood scale long streets (L = 47.4W and 79W), wind in taller streets is stronger and the ventilation is better than a lower one. For the city scale long streets (L = 333W and 667W), a constant flow region exists where the vertical velocity is zero and the stream-wise velocity remains constant. In such regions, turbulent fluctuations across the street roof are more important to air exchange than vertical mean flows. In a taller street, the process to establish the constant flow conditions is longer and the normalized balanced horizontal flow rate is smaller than those in a lower street. In the city scale long streets, the turbulence exchange rate can be 5-10 times greater than the mean flow rate. Crown Copyright © 2009.postprin

Electronic structure near the 1/8-anomaly in La-based cuprates

We report an angle resolved photoemission study of the electronic structure of the pseudogap state in \NdLSCO ($T_c<7$ K). Two opposite dispersing Fermi arcs are the main result of this study. The several scenarios that can explain this observation are discussed.Comment: A high-resolution version can be found at http://lns.web.psi.ch/lns/download/Pockets/arXiv.pd

Spectroscopic evidence for preformed Cooper pairs in the pseudogap phase of cuprates

Angle-resolved photoemission on underdoped La$_{1.895}$Sr$_{0.105}$CuO$_4$ reveals that in the pseudogap phase, the dispersion has two branches located above and below the Fermi level with a minimum at the Fermi momentum. This is characteristic of the Bogoliubov dispersion in the superconducting state. We also observe that the superconducting and pseudogaps have the same d-wave form with the same amplitude. Our observations provide direct evidence for preformed Cooper pairs, implying that the pseudogap phase is a precursor to superconductivity

Anisotropic quasiparticle scattering rates in slightly underdoped to optimally doped high-temperature \LSCO\ superconductors

An angle-resolved photoemission study of the scattering rate in the superconducting phase of the high-temperature superconductor \LSCO\ with $x=0.145$ and $x=0.17$, as a function of binding energy and momentum, is presented. We observe that the scattering rate scales linearly with binding energy up to the high-energy scale $E_1\sim0.4$ eV. The scattering rate is found to be strongly anisotropic, with a minimum along the (0,0)-($\pi,\pi$) direction. A possible connection to a quantum-critical point is discussed.Comment: Final version published in PR

Relationships between basin architecture, basin closure, and occurrence of sulphide-bearing schists: an example from Tampere Schist Belt, Finland

We present field observations from the Palaeoproterozoic volcano-sedimentary Tampere palaeobasin, where the primary structures have been exceptionally well preserved. We use the observations to construct a new tectonic model for the southeastern margin of the Tampere basin during its inversion and subsequent closure. The observed volcano-sedimentary and structural features suggest a change in the local structural style from thick-skinned inversion to thin-skinned thrusting, in order to accommodate the crustal shortening during basin closure. Furthermore, it is suggested that there is a genetic relationship between the interpreted palaeothrust and the sulphide-bearing schist horizons in the study area. On a more general note, the results infer that presently subvertical mineralised shear zones may have originally been gently dipping, further suggesting that the mineralised fluids may not necessarily have been sourced from great depths (i.e. from deep within the basement)

Lectin-like bacteriocins from pseudomonas spp. utilise D-rhamnose containing lipopolysaccharide as a cellular receptor

Lectin-like bacteriocins consist of tandem monocot mannose-binding domains and display a genus-specific killing activity. Here we show that pyocin L1, a novel member of this family from Pseudomonas aeruginosa, targets susceptible strains of this species through recognition of the common polysaccharide antigen (CPA) of P. aeruginosa lipopolysaccharide that is predominantly a homopolymer of d-rhamnose. Structural and biophysical analyses show that recognition of CPA occurs through the C-terminal carbohydrate-binding domain of pyocin L1 and that this interaction is a prerequisite for bactericidal activity. Further to this, we show that the previously described lectin-like bacteriocin putidacin L1 shows a similar carbohydrate-binding specificity, indicating that oligosaccharides containing d-rhamnose and not d-mannose, as was previously thought, are the physiologically relevant ligands for this group of bacteriocins. The widespread inclusion of d-rhamnose in the lipopolysaccharide of members of the genus Pseudomonas explains the unusual genus-specific activity of the lectin-like bacteriocins

Two-Stage Clustering (TSC): A Pipeline for Selecting Operational Taxonomic Units for the High-Throughput Sequencing of PCR Amplicons

Clustering 16S/18S rRNA amplicon sequences into operational taxonomic units (OTUs) is a critical step for the bioinformatic analysis of microbial diversity. Here, we report a pipeline for selecting OTUs with a relatively low computational demand and a high degree of accuracy. This pipeline is referred to as two-stage clustering (TSC) because it divides tags into two groups according to their abundance and clusters them sequentially. The more abundant group is clustered using a hierarchical algorithm similar to that in ESPRIT, which has a high degree of accuracy but is computationally costly for large datasets. The rarer group, which includes the majority of tags, is then heuristically clustered to improve efficiency. To further improve the computational efficiency and accuracy, two preclustering steps are implemented. To maintain clustering accuracy, all tags are grouped into an OTU depending on their pairwise Needleman-Wunsch distance. This method not only improved the computational efficiency but also mitigated the spurious OTU estimation from ‘noise’ sequences. In addition, OTUs clustered using TSC showed comparable or improved performance in beta-diversity comparisons compared to existing OTU selection methods. This study suggests that the distribution of sequencing datasets is a useful property for improving the computational efficiency and increasing the clustering accuracy of the high-throughput sequencing of PCR amplicons. The software and user guide are freely available at http://hwzhoulab.smu.edu.cn/paperdata/

Oral Microbiome Profiles: 16S rRNA Pyrosequencing and Microarray Assay Comparison

The human oral microbiome is potentially related to diverse health conditions and high-throughput technology provides the possibility of surveying microbial community structure at high resolution. We compared two oral microbiome survey methods: broad-based microbiome identification by 16S rRNA gene sequencing and targeted characterization of microbes by custom DNA microarray.Oral wash samples were collected from 20 individuals at Memorial Sloan-Kettering Cancer Center. 16S rRNA gene survey was performed by 454 pyrosequencing of the V3–V5 region (450 bp). Targeted identification by DNA microarray was carried out with the Human Oral Microbe Identification Microarray (HOMIM). Correlations and relative abundance were compared at phylum and genus level, between 16S rRNA sequence read ratio and HOMIM hybridization intensity.; Correlation = 0.70–0.84).Microbiome community profiles assessed by 16S rRNA pyrosequencing and HOMIM were highly correlated at the phylum level and, when comparing the more commonly detected taxa, also at the genus level. Both methods are currently suitable for high-throughput epidemiologic investigations relating identified and more common oral microbial taxa to disease risk; yet, pyrosequencing may provide a broader spectrum of taxa identification, a distinct sequence-read record, and greater detection sensitivity