Transition Phenomena Induced by Internal Noise and Quasi-absorbing State

We study a simple chemical reaction system and effects of the internal noise. The chemical reaction system causes the same transition phenomenon discussed by Togashi and Kaneko [Phys. Rev. Lett. 86 (2001) 2459; J. Phys. Soc. Jpn. 72 (2003) 62]. By using the simpler model than Togashi-Kaneko's one, we discuss the transition phenomenon by means of a random walk model and an effective model. The discussion makes it clear that quasi-absorbing states, which are produced by the change of the strength of the internal noise, play an important role in the transition phenomenon. Stabilizing the quasi-absorbing states causes bifurcation of the peaks in the stationary probability distribution discontinuously.Comment: 6 pages, 5 figure

Neutron-star radii based on realistic nuclear interactions

The existence of neutron stars with $2M_\odot$ requires the strong stiffness of the equation of state (EoS) of neutron-star matter. We introduce a multi-pomeron exchange potential (MPP) working universally among 3- and 4-baryons to stiffen the EoS. Its strength is restricted by analyzing the nucleus-nucleus scattering with the G-matrix folding model. The EoSs are derived using the Brueckner-Hartree-Fock (BHF) and the cluster variational method (CVM) with the nuclear interactions ESC and AV18. The mass-radius relations are derived by solving the Tolmann-Oppenheimer-Volkoff (TOV) equation, where the maximum masses over $2M_\odot$ are obtained on the basis of the terrestrial data. Neutron-star radii $R$ at a typical mass $1.5M_\odot$ are predicted to be $12.3\!\sim\!13.0$ km. The uncertainty of calculated radii is mainly from the ratio of 3- and 4-pomeron coupling constants, which cannot be fixed by any terrestrial experiment. Though values of $R(1.5M_\odot)$ are not influenced by hyperon-mixing effects, finely-observed values for them indicate degrees of EoS softening by hyperon mixing in the region of $M\!\sim\!2M_\odot$. If $R(1.5M_\odot)$ is less than about 12.4 km, the softening of EoS by hyperon mixing has to be weak. Useful information can be expected by the space mission NICER offering precise measurements for neutron-star radii within $\pm 5\%$.Comment: 8 pages, 7 figure

Mesoscale modeling of molecular machines: Cyclic dynamics and hydrodynamical fluctuations

Proteins acting as molecular machines can undergo cyclic internal conformational motions that are coupled to ligand binding and dissociation events. In contrast to their macroscopic counterparts, nanomachines operate in a highly fluctuating environment, which influences their operation. To bridge the gap between detailed microscopic and simple phenomenological descriptions, a mesoscale approach, which combines an elastic network model of a machine with a particle-based mesoscale description of the solvent, is employed. The time scale of the cyclic hinge motions of the machine prototype is strongly affected by hydrodynamical coupling to the solvent

Nonlinear Relaxation Dynamics in Elastic Networks and Design Principles of Molecular Machines

Analyzing nonlinear conformational relaxation dynamics in elastic networks corresponding to two classical motor proteins, we find that they respond by well-defined internal mechanical motions to various initial deformations and that these motions are robust against external perturbations. We show that this behavior is not characteristic for random elastic networks. However, special network architectures with such properties can be designed by evolutionary optimization methods. Using them, an example of an artificial elastic network, operating as a cyclic machine powered by ligand binding, is constructed.Comment: 12 pages, 9 figure

Orbital-dependent modifications of electronic structure across magneto-structural transition in BaFe2As2

Laser angle-resolved photoemission spectroscopy (ARPES) is employed to investigate the temperature (T) dependence of the electronic structure in BaFe2As2 across the magneto-structural transition at TN ~ 140 K. A drastic transformation in Fermi surface (FS) shape across TN is observed, as expected by first-principles band calculations. Polarization-dependent ARPES and band calculations consistently indicate that the observed FSs at kz ~ pi in the low-T antiferromagnetic (AF) state are dominated by the Fe3dzx orbital, leading to the two-fold electronic structure. These results indicate that magneto-structural transition in BaFe2As2 accompanies orbital-dependent modifications in the electronic structure.Comment: 13 pages, 4 figures. accepted by Physical Review Letter

Lung: t(6;12)(q22;q14.1) LRIG3/ROS1 in lung adenocarcinoma

Short communication on t(6;12)(q22;q14.1) LRIG3/ROS1 in lung adenocarcinoma with data on clinics