Connecting wind-driven upwelling and offshore stratification to nearshore internal bores and oxygen variability

This study utilizes field observations in southern Monterey Bay, CA, to examine how regional-scale upwelling and changing offshore (shelf) conditions influence nearshore internal bores. We show that the low-frequency wind forcing (e.g., upwelling/relaxation time scales) modifies the offshore stratification and thermocline depth. This in turn alters the strength and structure of observed internal bores in the near-shore. An internal bore strength index is defined using the high-pass filtered potential energy density anomaly in the nearshore. During weak upwelling favorable conditions and wind relaxations, the offshore thermocline deepens. In this case, both the amplitude of the offshore internal tide and the strength of the nearshore internal bores increase. In contrast, during strong upwelling conditions, the offshore thermocline shoals toward the surface, resulting in a decrease in the offshore internal tide amplitude. As a result, cold water accumulates in the nearshore (nearshore pooling), and the internal bore strength index decreases. Empirical orthogonal functions are utilized to support the claim that the bore events contribute to the majority of the variance in cross-shelf exchange and transport in the nearshore. Observed individual bores can drive shock-like drops in dissolved oxygen (DO) with rapid onset times, while extended upwelling periods with reduced bore activity produce longer duration, low DO events

Nearshore internal bores and turbulent mixing in southern Monterey Bay

We observed transient stratification and mixing events associated with nearshore internal bores in southern Monterey Bay using an array of instruments with high spatial and temporal resolution. The arrival of the bores is characterized by surging masses of dense (cold) water that tend to stratify the water column. The bore is followed by a gradual drop in the temperature throughout the water column over several hours (defined here as the bore period) until a sharp warm-front relaxation, followed by high frequency temperature fluctuations, returns the column back to nearly its original state (defined here as the mixing period). Mixing periods revealed increased temperature variance at high frequencies (ω \u3e ), as well as a greater percentage of events where dynamic instabilities may be present (Ri\u3c 0.25), suggesting active mixing of the stratified water column. Turbulent dissipation rates in the stratified interior during the mixing period, estimated using the technique of isopycnal slope spectra, revealed mean values the same order of magnitude as near-bed bottom-generated turbulence. Observations indicate that local shear-produced turbulent kinetic energy by the warm front relaxations dominates mixing in the stratified interior. The non-canonical nature of these bore and relaxation events is also investigated with a numerical model, and the dynamics are shown to depend on the internal Iribarren number. Our results suggest that nearshore internal bores interacting with local bathymetry dramatically alter local dynamics and mixing in the nearshore with important ecological implications

Larval fishes utilize Batesian mimicry as a survival strategy in the plankton

Marine teleost fishes often experience over 99% mortality in the early life stages (eggs and larvae), yet larval survival is essential to population sustainability. Marine fish larvae from a wide range of families display elaborate, delicate features that bear little resemblance to adult forms and hinder their swimming escape ability by increasing drag. Here, we systematically examine the criteria needed for Batesian mimicry to evolve as a survival strategy and present new evidence from in situ imaging technology and simulation modelling to support the hypothesis that many larval morphological features (particularly long, delicate fin rays) and behaviors evolved at least in part through Batesian mimicry of less palatable or noxious gelatinous zooplankton. Many of these organisms (e.g. hydromedusae, ctenophores, and siphonophores) are much more abundant than previously recognized. The high predation mortality during the larval phase provides strong potential for selection in favor of maintaining complex and metabolically costly features that mimic gelatinous zooplankton, provided that larger fishes, as selective visual predators, can occasionally be fooled. We conclude that recent advances in our understanding of mimicry combined with information obtained from plankton imaging supports the hypothesis that Batesian mimicry is a widespread survival strategy for larval fishes, which could have broad implications for fish population dynamics. However, further research is needed in the areas of predator cognition and larval fish behavior in the presence of different predators and models to elucidate the circumstances in which the larval fish mimicry hypothesis may apply.This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by Inter-Research. The published article can be found at: http://www.int-res.com/journals/meps/meps-home/Keywords: Survival, Plankton, Larval fish, Batesian mimicry, Recruitment, Gelatinous zooplankto

Observations of nonlinear internal waves at a persistent coastal upwelling front

We collected high-resolution observations of nonlinear internal waves (NLIWs) at a persistent upwelling front in the shallow coastal environment (~20 m) of northern Monterey Bay, CA. The coastal upwelling front forms between recently upwelled waters and warmer stratified waters that are trapped in the bay (upwelling shadow). The front propagates up and down the coast in the along-shore direction as a buoyant plume front due to modulation by strong diurnal wind forcing. The evolution of the coastal upwelling front, and the subsequent modulation of background environmental conditions, is examined using both individual events and composite day averages. We demonstrate that regional-scale upwelling and local diurnal wind forcing are key components controlling local stratification and the formation of internal wave guides that allow for high-frequency internal wave activity. Finally, we discuss the ability of theoretical models to describe particularly large-amplitude internal waves that exist in the presence of a strong background shear and test a fully nonlinear model (i.e., the Dubreil–Jacotin–Long equation)

Barotropic to baroclinic energy conversion using a time-varying background density

Internal wave generation is fundamentally the conversion of barotropic to baroclinic energy that often occurs due to vertical acceleration of stratified flows over topographic features. Acceleration results in a phase lag between density (pressure) perturbations and the barotropic velocity. To estimate the conversion of barotropic to baroclinic energy, the density perturbation is often calculated using a time-invariant background density. Other phenomena, however, can also alter the phasing of density perturbations and vertical velocities, such as barotropic tidal heaving and internal wave interactions. Consequently, accurately accounting for these dynamics in energy budgets is important. Tidal averaging or modal decomposition are often used to isolate topographic energy conversion in the presence of these other phenomena. However, while effective, these methods do not provide insights into the dynamics of conversion either through time or over depth. Here, we present a new analytical approach to calculating barotropic to baroclinic conversion using a time-varying background density. Our method results in an additional term in the baroclinic energy budget that directly accounts for barotropic tidal heaving and internal wave interactions, depending on the formulation of the background density. The tidally averaged, domain-integrated conversion rate is consistent across methods. Isolation of topographic conversion demonstrates that conversion due to interactions between internal wave beams and barotropic tidal heaving lead to relatively small differences in the overall conversion. However, using a time-varying background density allows for full decomposition of barotropic to baroclinic conversion through time and the identification of regions where negative conversion related to mixing actually occurs

A novel coupled fluid-behavior model for simulating dynamic huddle formation.

A coupled numerical model is developed to examine aggregative behavior in instances where the behavior not only responds to the environment, but the environment responds to the behavior such as fish schooling and penguin huddling. In the coupled model, the full Navier-Stokes equations are solved for the wind field using a finite difference method (FDM), and coupled to a smoothed particle hydrodynamics (SPH) model adapted to simulate animal behavior (penguins are individual particles in the SPH). We use the model to examine the dynamics of penguin huddling as a purely individual fitness maximizing behavior. SPH is a mesh-free Lagrangian method driven by local interactions between neighboring fluid particles and their environment allowing particles to act as free ranging 'animals' unconstrained by a computational grid that implicitly interact with one another (a critical element of aggregative behavior). The coupled model is recomputed simultaneously as the huddle evolves over time to update individual particle positions, redefine the properties of the developing huddle (i.e., shape and density), and adjust the wind field flowing through and around the dynamic huddle. This study shows the ability of a coupled model to predict the dynamic properties of penguin huddling, to quantify biometrics of individual particle "penguins", and to confirm communal penguin huddling behavior as an individualistic behavior

Larval Fishes Utilize Batesian Mimicry as a Survival Strategy in the Plankton

Marine teleost fishes often experience over 99% mortality in the early life stages (eggs and larvae), yet larval survival is essential to population sustainability. Marine fish larvae from a wide range of families display elaborate, delicate features that bear little resemblance to adult forms and hinder their swimming escape ability by increasing drag. Here, we systematically examine the criteria needed for Batesian mimicry to evolve as a survival strategy and present new evidence from in situ imaging technology and simulation modelling to support the hypothesis that many larval morphological features (particularly long, delicate fin rays) and behaviors evolved at least in part through Batesian mimicry of less palatable or noxious gelatinous zooplankton. Many of these organisms (e.g. hydromedusae, ctenophores, and siphonophores) are much more abundant than previously recognized. The high predation mortality during the larval phase provides strong potential for selection in favor of maintaining complex and metabolically costly features that mimic gelatinous zooplankton, provided that larger fishes, as selective visual predators, can occasionally be fooled. We conclude that recent advances in our understanding of mimicry combined with information obtained from plankton imaging supports the hypothesis that Batesian mimicry is a widespread survival strategy for larval fishes, which could have broad implications for fish population dynamics. However, further research is needed in the areas of predator cognition and larval fish behavior in the presence of different predators and models to elucidate the circumstances in which the larval fish mimicry hypothesis may apply

Wave Modulation of Flows on Open and Closed Reefs

AbstractUsing observations, numerical models, and theory, we explore a framework to classify reefs as open or closed based on their dynamics. While the concepts of open and closed reefs are used widely in studies of coral reef hydrodynamics and are generally based on geometry, there is no consensus on what qualifies as open and closed. With observations from Ofu, American Samoa, we show that the reef flat exhibits two different dynamical regimes depending on tidal and wave forcing. Flow over this reef flat resembles a classic one‐dimensional barrier reef flow during low tide, where wave setup creates a cross‐reef pressure gradient which forces flow on the flat. On high tide, however, flow on the flat is oblique to the crest, and at times directed offshore. We reproduce this behavior in an idealized numerical model of a fringing reef. We classify open reefs as a condition where an onshore, wave‐generated pressure gradient is balanced by friction, and closed reefs as a condition where an onshore radiation stress gradient is opposed by an offshore pressure gradient. Results from the fringing reef model show that the system transitions between open and closed behavior over a tidal cycle. Results from an additional barrier reef numerical model exhibits almost exclusively open reef behavior, for which we derive a simple theoretical model. We argue that classifying reefs as open or closed based on their dynamics, rather than geometry, is a more meaningful approach to comparing reefs and predicting their dynamical response to wave and tidal forcing.</jats:p