Natural history of Plasmodium odocoilei malaria infection in farmed white-tailed deer

ABSTRACT White-tailed deer (Odocoileus virginianus), an ecologically and economically important species, are the most widely distributed large animals in North America. A recent study indicated that up to 25% of all white-tailed deer may be infected with Plasmodium odocoilei, a malaria parasite belonging to the distinct clade of ungulate-infecting Plasmodium spp. Because the clinical impact of P. odocoilei on deer health and survival is unknown, we undertook a retrospective longitudinal study of farmed Floridian O. virginianus fawns. We found that a substantial proportion (21%) of fawns acquire malaria infection during the first 8 months of life. Some animals naturally clear P. odocoilei infection, while other animals remain persistently positive. Importantly, we found that animals that acquire malaria parasites very early in life have poor survival compared to animals that remain uninfected. Our report thus provides the first evidence of a clinically significant impact of malaria infection in young deer. IMPORTANCE Malaria parasites of the genus Plasmodium are known to infect a variety of vertebrate hosts, including ungulates (hoofed mammals). A recent study found that up to a quarter of white-tailed deer (Odocoileus virginianus) in North America are infected with the parasite Plasmodium odocoilei. In addition to occupying an important ecological niche, white-tailed deer are popular game animals and deer farming represents a rapidly growing industry. However, the effect of P. odocoilei infection in this ecologically and economically important ungulate species is unknown. Our work is significant because (i) we identified a high prevalence of P. odocoilei in farmed deer and (ii) we found evidence for both cleared and persistent infection, as well as an association with decreased survival of young fawns

Highly polymorphic microsatellites in the North American snakeweed grasshopper, Hesperotettix viridis

Microsatellite markers are preferred for fine-scale population genetic studies requiring high resolution. The grasshopper Hesperotettix viridis (Thomas) is an oligophagous species that feeds on composites and often exhibits locally restricted diets. Divergence in host plant use in some localities is seen where co-occurring subpopulations select alternate plant species, as expected with the evolution of host shifts and associated lineage divergence. To characterize the host-associated divergence patterns among populations of H. viridis, we developed markers from two microsatellite-enriched genomic libraries. Here we report the characterization and optimization of seven polymorphic di- and tri-nucleotide microsatellite loci for this species. One hundred and six individuals from 5 populations were tested for polymorphism. The number of alleles varied from 4 to 38 in all the populations. Ho ranged from 0.339 to 0.790. Homozygote excess was observed across loci, perhaps due to inbreeding. This is the first report of microsatellite markers for the subfamily Melanoplinae

Effects of wind energy development on survival of female greater prairie-chickens

The potential effects of wind energy development on wildlife have received increased attention over the past decade. In Kansas, optimal sites for wind energy development often overlap with preferred habitats of greater prairie-chickens Tympanuchus cupido. Our goal was to determine whether wind energy development affected survival of female prairie-chickens in a grassland ecosystem, assessing one potential impact of wind on an upland gamebird of conservation concern. We focused primarily on the response of female prairie-chickens to wind energy development because population dynamics of prairie-chickens are primarily determined by female demography. We monitored prairie-chickens at a wind facility in Kansas during a 2-year pre-construction (2007–2008) and a 3-year post-construction period (2009–2011). We used data from 220 radio-marked females to calculate weekly survival and hazard rates. We used cause of death for 81 mortality events to test for changes in the proportion of mortalities attributed to mammalian predators, avian predators and collisions. We observed an unexpected increase in annual survival during the post-construction period (0·57) compared with the pre-construction period (0·32). Distance from home range centroid to the nearest wind turbine site had no effect on weekly survival of females. Collision mortality events were rare, and most were associated with fences or transmission lines and not turbine blades. Most female mortality was due to predation (c. 90%). Differences in annual survival were driven by a higher risk of mortality during lekking activity in March and April during the pre-construction period (weekly hazard rate = 0·050–0·062) compared with the post-construction period (hazard rate = 0·012–0·021). We observed no change in the proportion of mortalities attributed to different causes between the two treatment periods. Synthesis and applications. Development of a wind energy facility had no negative effect on survival of female prairie-chickens. The results of our field study indicate that greater prairie-chickens are less sensitive to wind energy development than lesser prairie-chickens Tympanuchus pallidicinctus and greater sage-grouse Centrocercus urophasianus are to oil and gas development. We have strong evidence that survival increased after wind energy development, and hypothesize that energy development affected the local predator community, resulting in an indirect effect of decreased predation risk during the post-construction period

Land-use diversity within an agricultural landscape promotes termite nutrient cycling services in a southern African savanna

CITATION: LeClare, S. K. et al. 2020. Land-use diversity within an agricultural landscape promotes termite nutrient cycling services in a southern African savanna. Global Ecology and Conservation, 21. doi:10.1016/j.gecco.2019.e00885The original publication is available at https://www.sciencedirect.com/journal/global-ecology-and-conservationSoil macrofauna provide key supporting ecosystem services by transporting nutrients against physical and chemical gradients. In the semi-arid savannas of southern Africa, termites are the dominant macrofauna whose foraging activities increase nutrient availability, soil aeration and water infiltration. With increasing land-use conversion, savanna landscapes are becoming surrounded by a matrix of agricultural landscapes. We tested how compositional and configurational landscape heterogeneity influenced the presence of soil sheetings, a termite foraging activity, within savanna habitat patches embedded in a heterogeneous agricultural landscape in north-east Eswatini. We found that landscape heterogeneity most strongly influenced termite foraging activity at smaller spatial scales (1- to 2-km surrounding the savanna patch). Within this spatial scale, high compositional heterogeneity, which was indicative of diverse habitat patches, promoted termite foraging activity, yet high configurational heterogeneity, indicative of a fragmented landscape, reduced termite foraging activity. At larger landscape scales (5-km), the heterogeneity of the landscape no longer influenced termite foraging activity, yet low to moderate proportions of sugarcane surrounding savanna patches promoted termite foraging activity within those patches. Our results provide novel insights in how the structure of the landscape affects termite foraging activity, demonstrating that diverse, intact landscapes are a critical buffer in maintaining positive nutrient cycling services within an agricultural landscape.https://www.sciencedirect.com/science/article/pii/S2351989419304408Publishers versio

Wildlife Management Practices Associated with Pathogen Exposure in Non-NativeWild Pigs in Florida, U.S.

Land use influences disease emergence by changing the ecological dynamics of humans, wildlife, domestic animals, and pathogens. This is a central tenet of One Health, and one that is gaining momentum in wildlife management decision-making in the United States. Using almost 2000 serological samples collected from non-native wild pigs (Sus scrofa) throughout Florida (U.S.), we compared the prevalence and exposure risk of two directly transmitted pathogens, pseudorabies virus (PrV) and Brucella spp., to test the hypothesis that disease emergence would be positively correlated with one of the most basic wildlife management operations: Hunting. The seroprevalence of PrV-Brucella spp. coinfection or PrV alone was higher for wild pigs in land management areas that allowed hunting with dogs than in areas that culled animals using other harvest methods. This pattern did not hold for Brucella alone. The likelihood of exposure to PrV, but not Brucella spp., was also significantly higher among wild pigs at hunted sites than at sites where animals were culled. By failing to consider the impact of dog hunting on the emergence of non-native pathogens, current animal management practices have the potential to affect public health, the commercial livestock industry, and wildlife conservation

Wildlife Management Practices Associated with Pathogen Exposure in Non-NativeWild Pigs in Florida, U.S.

Land use influences disease emergence by changing the ecological dynamics of humans, wildlife, domestic animals, and pathogens. This is a central tenet of One Health, and one that is gaining momentum in wildlife management decision-making in the United States. Using almost 2000 serological samples collected from non-native wild pigs (Sus scrofa) throughout Florida (U.S.), we compared the prevalence and exposure risk of two directly transmitted pathogens, pseudorabies virus (PrV) and Brucella spp., to test the hypothesis that disease emergence would be positively correlated with one of the most basic wildlife management operations: Hunting. The seroprevalence of PrV-Brucella spp. coinfection or PrV alone was higher for wild pigs in land management areas that allowed hunting with dogs than in areas that culled animals using other harvest methods. This pattern did not hold for Brucella alone. The likelihood of exposure to PrV, but not Brucella spp., was also significantly higher among wild pigs at hunted sites than at sites where animals were culled. By failing to consider the impact of dog hunting on the emergence of non-native pathogens, current animal management practices have the potential to affect public health, the commercial livestock industry, and wildlife conservation

An Unidentified Filarial Species and its Impact on Fitness in Wild Populations of the Black-Footed Ferret (\u3ci\u3eMustela nigripes\u3c/i\u3e)

Disease can threaten the restoration of endangered species directly by substantially decreasing host survival or indirectly via incremental decreases in survival and reproduction. During a biomedical survey of reintroduced populations of the highly endangered black-footed ferret from 2002 to 2005, microfilariae discovered in the blood were putatively identified as Dirofilaria immitis, and widespread screening was initiated using a commercially available antigen-based ELISA test. A subset of animals (n = 16) was screened for D. immitis using a highly sensitive PCR-based assay. Microfilariae were also molecularly and morphologically characterized. Of 198 animals at six reintroduction sites, 12% had positive results using the ELISA test. No antigen-positive animals which were screened via PCR (n = 11) had positive PCR results, and all antigen-positive animals (n=24) were asymptomatic. No significant differences were found in body mass of antigen-positive (male: 1223±82 g [mean±SD], female: 726±75 g) vs. antigen-negative (male: 1,198±119 g, female: 710±53 g) individuals (P=0.4). Antigen prevalence was lower in juveniles (3%) than adults (12%; P=0.03), and higher in in situ, captive-reared individuals (33%) than wild-born individuals (10%; P=0.005). Morphologic, analysis of microfilariae revealed they were neither D. immitis nor any other previously characterized North American species. PCR amplification of the 5S spacer region of rDNA revealed that the filarial sequence shared only 76% identity with D. immitis. This previously unidentified filarial sequence was present in all antigen positive animals (11 of 11 tested). It appears that black-footed ferrets were infected with a previously undescribed species of filaria whose antigen cross-reacted with the ELISA assay, although further analysis is needed to make a conclusive statement. Nonetheless, this previously undescribed filaria does not appear to threaten recovery for this highly endangered mammal

Dispersal and Land Cover Contribute to Pseudorabies Virus Exposure in Invasive Wild Pigs

We investigated the landscape epidemiology of a globally distributed mammal, the wild pig (Sus scrofa), in Florida (U.S.), where it is considered an invasive species and reservoir to pathogens that impact the health of people, domestic animals, and wildlife. Specifically, we tested the hypothesis that two commonly cited factors in disease transmission, connectivity among populations and abundant resources, would increase the likelihood of exposure to both pseudorabies virus (PrV) and Brucella spp. (bacterial agent of brucellosis) in wild pigs across the Kissimmee Valley of Florida. Using DNA from 348 wild pigs and sera from 320 individuals at 24 sites, we employed population genetic techniques to infer individual dispersal, and an Akaike information criterion framework to compare candidate logistic regression models that incorporated both dispersal and land cover composition. Our findings suggested that recent dispersal conferred higher odds of exposure to PrV, but not Brucella spp., among wild pigs throughout the Kissimmee Valley region. Odds of exposure also increased in association with agriculture and open canopy pine, prairie, and scrub habitats, likely because of highly localized resources within those land cover types. Because the effect of open canopy on PrV exposure reversed when agricultural cover was available, we suggest that small-scale resource distribution may be more important than overall resource abundance. Our results underscore the importance of studying and managing disease dynamics through multiple processes and spatial scales, particularly for non-native pathogens that threaten wildlife conservation, economy, and public health

Assessing the utility of metabarcoding for diet analyses of the omnivorous wild pig (\u3ci\u3eSus scrofa\u3c/i\u3e)

Wild pigs (Sus scrofa) are an invasive species descended from both domestic swine and Eurasian wild boar that was introduced to North America during the early 1500s. Wild pigs have since become the most abundant free-ranging exotic ungulate in the United States. Large and ever-increasing populations of wild pigs negatively impact agriculture, sport hunting, and native ecosystems with costs estimated to exceed $1.5 billion/ year within the United States. Wild pigs are recognized as generalist feeders, able to exploit a broad array of locally available food resources, yet their feeding behaviors remain poorly understood as partially digested material is often unidentifiable through traditional stomach content analyses. To overcome the limitation of stomach content analyses, we developed a DNA sequencing-based protocol to describe the plant and animal diet composition of wild pigs. Additionally, we developed and evaluated blocking primers to reduce the amplification and sequencing of host DNA, thus providing greater returns of sequences from diet items. We demonstrate that the use of blocking primers produces significantly more sequencing reads per sample from diet items, which increases the robustness of ascertaining animal diet composition with molecular tools. Further, we show that the overall plant and animal diet composition is significantly different between the three areas sampled, demonstrating this approach is suitable for describing differences in diet composition among the locations

Invasion ecology of wild pigs (Sus scrofa) in Florida, USA: the role of humans in the expansion and colonization of an invasive wild ungulate

Wild pigs (Sus scrofa) are the most widely distributed invasive wild ungulate in the United States, yet the factors that influence wild pig dispersal and colonization at the regional level are poorly understood. Our objective was to use a population genetic approach to describe patterns of dispersal and colonization among populations to gain a greater understanding of the invasion process contributing to the expansion of this species. We used 52 microsatellite loci to produce individual genotypes for 482 swine sampled at 39 locations between 2014 and 2016. Our data revealed the existence of genetically distinct subpopulations (FST = 0.1170, p\0.05). We found evidence of both fine-scale subdivision among the sampling locations, as well as evidence of long term genetic isolation. Several locations exhibited significant admixture (interbreeding) suggesting frequent mixing of individuals among locations; up to 14% of animals were immigrants from other populations. This pattern of admixture suggested successive rounds of human-assisted translocation and subsequent expansion across Florida. We also found evidence of genetically distinct populations that were isolated from nearby populations, suggesting recent introduction by humans. In addition, proximity to wild pig holding facilities was associated with higher migration rates and admixture, likely due to the escape or release of animals. Taken together, these results suggest that human-assisted movement plays a major role in the ecology and rapid population growth of wild pigs in Florida