15 research outputs found
Tell me Daisy: from Blossom time, a musical play in three acts
- Publication venue
- Digital Commons IC
- Publication date
- 01/01/1921
- Field of study
https://digitalcommons.ithaca.edu/sheetmusic/1173/thumbnail.jp
American Gut: an Open Platform for Citizen Science Microbiome Research
- Author
- Adam Robbins-Pianka
- Alan Jarmusch
- Alexander A. Aksenov
- Alexander Butyaev
- Alexey V. Melnik
- Alison Vrbanac
- Allison E. Mann
- Amnon Amir
- Angel Frazier
- Antonio Gonzalez
- Anupriya Tripathi
- Arthur Cole Heale
- Ashkaan K. Fahimipour
- Austin D. Swafford
- Bahar Behsaz
- Beau Gunderson
- Caitriona Brennan
- Cameron Martino
- Carlito Lebrilla
- Catherine Lozupone
- Cecil M. Lewis
- Charles Raison
- Chi Zhang
- Chris Callewaert
- Chris Drogaris
- Christian L. Lauber
- Christina Warinner
- Christopher A. Lowry
- Cinnamon Bloss
- Clarisse Marotz
- Curtis Huttenhower
- Dan Knights
- Dana Willner
- Daniel McDonald
- Daniela Domingos Galzerani
- David A. Mills
- David J. Gonzalez
- Deepak Chopra
- Dilip V. Jeste
- Dirk Gevers
- Dmitry Meleshko
- Dominic Nguyen
- Donna Berg-Lyons
- Dorothy D. Sears
- Doug Wendel
- Elaine Wolfe
- Elena Nazarova
- Elijah Lovelace
- Embriette Hyde
- Emily Pierce
- Emily TerAvest
- Emmanuel Montassier
- Evan Bolyen
- Evguenia Kopylova
- Frederic D. Bushman
- Gail Ackermann
- Gary D. Wu
- George M. Church
- Gholamali Rahnavard
- Gordon Saxe
- Grant Gogul
- Greg Humphrey
- Hanna D. Holscher
- Hosein Mohimani
- Ivo Ugrina
- J. Bruce German
- J. Gregory Caporaso
- Jack A. Gilbert
- Jacob M. Wozniak
- Jacqueline Kerr
- Jacques Ravel
- James D. Lewis
- James Gaffney
- James T. Morton
- Jan S. Suchodolski
- Janet K. Jansson
- Jarrad T. Hampton-Marcell
- Jason Bobe
- Jeff Leach
- Jeroen Raes
- Jessica L. Green
- Jessica L. Metcalf
- John H. Chase
- Jonathan A. Eisen
- Jonathan Monk
- Jose C. Clemente
- Jose Navas-Molina
- Joseph Petrosino
- Joshua Ladau
- Joshua Shorenstein
- Julia Gauglitz
- Julia Goodrich
- Julian Jacobs
- Justin Geier
- Justine W. Debelius
- Jérôme Waldispühl
- Karenina Sanders
- Karsten Zengler
- Katherine S. Pollard
- Kelly S. Swanson
- Kim Lewis
- Kris Mayer
- Kyle Bittinger
- Larry Smarr
- Lindsay DeRight Goldasich
- Lindsay Dillon
- Lingjing Jiang
- Livia S. Zaramela
- Luke R. Thompson
- Lynn M. Schriml
- Madeleine Ball
- Maria G. Dominguez-Bello
- Marta M. Jankowska
- Martin Blaser
- Matthew A. Jackson
- Max Abramson
- Meg Pirrung
- Michael Minson
- Mike Kurisu
- Nadim Ajami
- Naseer Sangwan
- Neil R. Gottel
- Nicholas Chia
- Nicolai Reeve
- Noah Fierer
- null null
- Owen White
- Patrice D. Cani
- Paul Wischmeyer
- Pavel Pevzner
- Pawel Gajer
- Philip Hugenholtz
- Philip Strandwitz
- Pieter C. Dorrestein
- Purna Kashyap
- Qiyun Zhu
- Rachel Dutton
- Rachel S. Park
- Ramnik J. Xavier
- Ricardo Silva
- Rob Knight
- Robert H. Mills
- Robert R. Dunn
- Rodolfo Antonio Salido Benitez
- Rosa Krajmalnik-Brown
- Ruth Ley
- Sarah M. Owens
- Scott Klemmer
- Scott T. Kelley
- Se Jin Song
- Shyamal Peddada
- Siavash Mirarab
- Stefan Janssen
- Stephanie Moorman
- Susan Holmes
- Sébastien Matamoros
- Tanya T. Nguyen
- Tara Schwartz
- Tifani W. Eshoo-Anton
- Tim Vigers
- Timothy Spector
- Tomasz Kosciolek
- Varykina G. Thackray
- Vineet Pandey
- Will Van Treuren
- Xin Fang
- Yingfeng Chen
- Yoshiki Vázquez-Baeza
- Zhenjiang Zech Xu
- Publication venue
- 'American Society for Microbiology'
- Publication date
- 01/01/2018
- Field of study
McDonald D, Hyde E, Debelius JW, et al. American Gut: an Open Platform for Citizen Science Microbiome Research. mSystems. 2018;3(3):e00031-18
Defining the Historic American Heroine: Changing Characteristics of Heroic Women in Nineteenth-Century Media
- Author
- A.A.L.
- Arthur T.S.
- B.Y.
- Brooks N.C.
- Browne
- Cantrell
- Carlyle Thomas
- Coffin Tristram Potter
- Degh Linda
- Deming Caren J.
- Denhallow S.E.
- Downing Mildred
- Drucker Susan
- Ellet E.P.
- Ellet E.P.
- Fenton Fannie
- Fisher E. Burke
- Fishwick Marshall W.
- Forrest Virginia
- Forsyth Pauline
- Gratton T.C.
- Hale Sarah
- Hentz Caroline Lee
- Hull Wood
- Irving Helen
- List Karen K.
- Miles Miss M.
- Miles Miss M.
- Mott Frank Luther
- Neal Alice B.
- Neal Alice B.
- Okker Patricia
- Porter A.E.
- Sargeant Anna Maria
- Schnier Miriam
- Schwartz Barry
- Smith Seba
- Stauffer F.R.
- Toqueville Alexis
- Townsend Virginia B.
- Townsend Virginia B.
- Victor Meta Victoria
- Walker John
- Walsh Andrea
- Webster Noah
- Webster William
- Wecter Dixon
- Williston Clara P.
- Willner Dorothy
- Worcester
- Publication venue
- 'Wiley'
- Publication date
- Field of study
Max Gluckman and the making of Israeli anthropology
- Author
- Abarbanel Jay S
- Aronoff Myron J
- Aronoff Myron J
- Baldwin Elaine
- Bulmer Martin
- Burawoy Michael
- Cohen Abner
- Cohen Percy S
- Deshen Shlomo
- Deshen Shlomo
- Deshen Shlomo
- Deshen Shlomo
- Dominguez Virginia
- Eisenstadt Shmuel N
- Eisenstadt Shmuel N
- Epstein AL
- Evens Terence MS
- Garber-Talmon Yonina
- Gluckman Max
- Gluckman Max
- Gluckman Max
- Goldberg Harvey
- Handelman Don
- Handelman Don
- Kuper Adam
- Lerner Daniel
- Long Norman
- Mars Leonard
- Mars Leonard
- Marx Emanuel
- Marx Emanuel
- Marx Emanuel
- Middleton John
- Mitchell JClyde
- Ram Uri
- Shabtay Malka
- Shepher Israel
- Shokeid Moshe
- Shokeid Moshe
- Shokeid Moshe
- Shokeid Moshe
- Spiro Melvin
- Tiryakian EA
- Turner VW
- Van Teeffelen T
- Van Velsen Jaap
- Weil Shalva
- Weingrod Alex
- Weintraub Dov
- Willner Dorothy
- Wittrock Björn
- Publication venue
- 'Informa UK Limited'
- Publication date
- Field of study
State Building, State Autonomy and the Identity of Society: The Case of the Israeli State
- Author
- Aharoni Yair
- Alford Robert A.
- Aran Gideon
- Arian Asher
- Avineri Shlomo
- Azarya Victor
- BARUCH KIMMERLING
- Bellah Robert
- Ben-Yehuda Nachman
- Birnbaum Pierre
- Caspi Dan
- Dominguez R. Virginia
- Eisenstadt Shmuel N.
- Eisenstadt Shmuel N.
- Eisenstadt Shmuel N.
- Evans Peter B. Dietrich Rueschmeyer
- Friedman Menachem
- Friedman Menachem
- Galnoor Yizhak
- Giddens Anthony
- Gonen Amiram
- Gorny Yosef
- Gramsci Antonio
- Greenberg Stanley
- Grinberg Lev Luis
- Gross Nachum T.
- Gross Nachum T.
- Handelman Don
- Harkabi Yehoshafat
- Harshev Benjamin
- Hegel Georg
- Horowitz Dan
- Horowitz Dan
- Horowitz David
- Keane John
- Kimmerling Baruch
- Kimmerling Baruch
- Kimmerling Baruch
- Kimmerling Baruch
- Kimmerling Baruch
- Kimmerling Baruch
- Kimmerling Baruch
- Krasner Stephan D
- Laqueur Walter
- Liebman Charles S.
- Liebman Charles S.
- Lustick Ian
- Lustick Ian
- Lustick Ian
- Lustick Ian
- Mann Michael
- Matras Judah
- Medding Peter
- Metzer Jacob
- Migdal Joel S.
- Miller Ylana N.
- Mintz Alex
- Nordlinger Eric
- Peri Yoram
- Peri Yoram
- Porath Yehoshua
- Porath Yehoshua
- Reuveny Jacob
- Rosenfeld Henry
- Semyonov Moshe
- Shafir Gershon
- Shalev Michael
- Shalev Michael
- Shapiro Yonathan
- Shapiro Yonathan
- Sharkanski Ira
- Sivan Emanuel
- Smooha Sammy
- Sprinzak Ehud
- Swirski Shlomo
- Taylor Charles
- Vital David
- Weber Max
- Willner Dorothy
- Zilberfarb Ben-Zion
- Zloczover Abraham
- Publication venue
- 'Wiley'
- Publication date
- Field of study
movie_s2.mp4
- Author
- Adam Robbins-Pianka (2016013)
- Alan Jarmusch (4900324)
- Alexander A. Aksenov (584220)
- Alexey V. Melnik (3341477)
- Alison Vrbanac (4900219)
- Allison E. Mann (4900213)
- Amnon Amir (45764)
- Angel Frazier (4900234)
- Antonio Gonzalez (2150521)
- Anupriya Tripathi (4228504)
- Arthur Cole Heale (4900390)
- Ashkaan K. Fahimipour (4900240)
- Austin Swafford (4900381)
- Bahar Behsaz (762520)
- Brennan Caitriona (4900387)
- Caitriona Brennen (4900216)
- Cameron Martino (4900222)
- Carlito Lebrilla (2083105)
- Catherine Lozupone (21305)
- Cecil M. Lewis Jr. (269417)
- Charles Raison (4900237)
- Chi Zhang (9857)
- Chris Callewaert (444348)
- Christian L. Lauber (191243)
- Christina Warinner (513402)
- Christopher A. Lowry (592172)
- Cinnamon Bloss (619703)
- Clarisse Marotz (4890046)
- Curtis Huttenhower (21159)
- Dan Knights (103804)
- Dana Willner (171081)
- Daniel McDonald (47302)
- Daniel McDonald (4899922)
- Daniela Domingos Galzerani (4900225)
- David A. Mills (128485)
- David J. Gonzalez (4449451)
- Deepak Chopra (328612)
- Dilip V. Jeste (811193)
- Dirk Gevers (50883)
- Dmitry Meleshko (4900336)
- Dominic Nguyen (4900330)
- Donna Berg-Lyons (191238)
- Dorothy D. Sears (359780)
- Doug Wendel (4900231)
- Elaine Wolfe (4900243)
- Elijah Lovelace (4900228)
- Embriette R. Hyde (478209)
- Emily Pierce (4900255)
- Emily TerAvest (4900252)
- Emmanuel Montassier (2181862)
- Evan Bolyen (3571697)
- Evguenia Kopylova (4900294)
- Frederic D. Bushman (22634)
- Gail Ackermann (618902)
- Gary D. Wu (142852)
- George M. Church (102039)
- Gholamali Rahnavard (4805520)
- Gordon Saxe (4900258)
- Grant Gogul (4900270)
- Gregory Humphrey (4900273)
- Hannah D. Holscher (786621)
- Hosein Mohimani (1327503)
- Ivo Ugrina (4384318)
- J. Bruce German (223525)
- J. Gregory Caporaso (229094)
- Jack Gilbert (139767)
- Jacob M. Wozniak (4900267)
- Jacqueline Kerr (785884)
- Jacques Ravel (5502)
- James D. Lewis (142856)
- James Gaffney (4900264)
- James T. Morton (4455616)
- Jan S. Suchodolski (107343)
- Janet K. Jansson (117759)
- Jarrad T. Hampton-Marcell (4045862)
- Jason Bobe (4900261)
- Jeff Leach (4900249)
- Jeroen Raes (6041)
- Jessica L. Green (109204)
- Jessica L. Metcalf (3253854)
- John H. Chase (276379)
- Jonathan A. Eisen (93505)
- Jonathan Monk (3548066)
- Jose A. Navas-Molina (4900303)
- Jose C. Clemente (280826)
- Joseph Petrosino (39790)
- Joshua Ladau (232530)
- Joshua Shorenstein (4900300)
- Julia Gauglitz (4900288)
- Julia Goodrich (3454907)
- Julian Jacobs (4900366)
- Justin Geier (4900327)
- Justine W. Debelius (618901)
- Karenina Sanders (4900369)
- Karsten Zengler (247723)
- Katherine S. Pollard (14217)
- Kelly S. Swanson (210272)
- Kim Lewis (20864)
- Kris Mayer (4900312)
- Kyle Bittinger (137003)
- Larry Smarr (379158)
- Lindsay DeRight Goldasich (4900375)
- Lindsay Dillon (4634245)
- Lingjing Jiang (4900372)
- Livia S. Zaramela (631780)
- Luke R. Thompson (265546)
- Lynn M. Schriml (579376)
- Maria G. Dominguez-Bello (4900348)
- Marta M. Jankowska (4900393)
- Martin Blaser (2167843)
- Matthew A. Jackson (4900291)
- Max Abramson (4900342)
- Meg Pirrung (4900318)
- Michael Minson (2140813)
- Mike Kurisu (4900345)
- Nadim Ajami (3526169)
- Naseer Sangwan (130913)
- Neil R. Gottel (3266802)
- Nicholas Chia (233775)
- Nicolai Reeve (4900354)
- Noah Fierer (121024)
- Owen White (189)
- Patrice D. Cani (152762)
- Paul Wischmeyer (4900285)
- Pavel Pevzner (29423)
- Pawel Gajer (178443)
- Philip Strandwitz (4708879)
- Phillip Hugenholtz (222811)
- Pieter C Dorrestein (4900363)
- Purna Kashyap (3460319)
- Qiyun Zhu (694450)
- Rachel Dutton (4900378)
- Rachel S. Park (4900339)
- Ramnik J. Xavier (153776)
- Ricardo Silva (4739820)
- Rob Knight (11635)
- Robert H. Mills (4900333)
- Robert R. Dunn (121034)
- Rodolfo Antonio Salido Benitez (4900321)
- Rosa Krajmalnik-Brown (430268)
- Ruth Ley (3454904)
- Sarah M. Owens (512539)
- Scott Klemmer (4900357)
- Scott T. Kelley (158464)
- Se Jin Song (3243147)
- Shyamal Peddada (3457745)
- Siavash Mirarab (3259020)
- Stefan Janssen (44445)
- Stephanie Moorman (4900306)
- Susan Holmes (243177)
- Sébastien Matamoros (4900315)
- Tanya Nguyen (4900309)
- Tanya T. Nguyen (4900351)
- Tara Schwartz (508198)
- Tifani W. Eshoo-Anton (4900297)
- Tim Vigers (4900360)
- Timothy Spector (348486)
- Tomasz Kosciolek (538142)
- Varykina G. Thackray (665721)
- Vineet Pandey (4900384)
- Will Van Treuren (745942)
- Xin Fang (134979)
- Yingfeng Chen (2457415)
- Yoshiki Vázquez-Baeza (542947)
- Zhenjiang Zech Xu (754869)
- Publication venue
- Publication date
- Field of study
Placing changes in the microbiome in the context of the American Gut. We accumulated samples over sequencing runs to demonstrate the structural consistency in the data. We demonstrate that while the ICU dataset (https://www.ncbi.nlm.nih.gov/pubmed/27602409) falls within the American Gut samples, they do not fall close to most samples at any of the body sites. We then highlight samples from the United Kingdom, Australia, the United States and other countries to show that nationality does not overcome the variation in body site. We then highlight the utility of the American Gut in meta-analysis by reproducing results from (https://www.ncbi.nlm.nih.gov/pubmed/20668239) and (https://www.ncbi.nlm.nih.gov/pubmed/23861384), using the AGP dataset as the context for dynamic microbiome changes instead of the HMP dataset. We show rapid, complete recovery of C. diff patients following fecal material transplantation and also contextualized the change in an infant gut over time until it settles into an adult state. This demonstrates the power of the American Gut dataset, both as a cohesive study and as a context for other investigations
ag_tree.tre
- Author
- Adam Robbins-Pianka (2016013)
- Alan Jarmusch (4900324)
- Alexander A. Aksenov (584220)
- Alexey V. Melnik (3341477)
- Alison Vrbanac (4900219)
- Allison E. Mann (4900213)
- Amnon Amir (45764)
- Angel Frazier (4900234)
- Antonio Gonzalez (2150521)
- Anupriya Tripathi (4228504)
- Arthur Cole Heale (4900390)
- Ashkaan K. Fahimipour (4900240)
- Austin Swafford (4900381)
- Bahar Behsaz (762520)
- Brennan Caitriona (4900387)
- Caitriona Brennen (4900216)
- Cameron Martino (4900222)
- Carlito Lebrilla (2083105)
- Catherine Lozupone (21305)
- Cecil M. Lewis Jr. (269417)
- Charles Raison (4900237)
- Chi Zhang (9857)
- Chris Callewaert (444348)
- Christian L. Lauber (191243)
- Christina Warinner (513402)
- Christopher A. Lowry (592172)
- Cinnamon Bloss (619703)
- Clarisse Marotz (4890046)
- Curtis Huttenhower (21159)
- Dan Knights (103804)
- Dana Willner (171081)
- Daniel McDonald (47302)
- Daniel McDonald (4899922)
- Daniela Domingos Galzerani (4900225)
- David A. Mills (128485)
- David J. Gonzalez (4449451)
- Deepak Chopra (328612)
- Dilip V. Jeste (811193)
- Dirk Gevers (50883)
- Dmitry Meleshko (4900336)
- Dominic Nguyen (4900330)
- Donna Berg-Lyons (191238)
- Dorothy D. Sears (359780)
- Doug Wendel (4900231)
- Elaine Wolfe (4900243)
- Elijah Lovelace (4900228)
- Embriette R. Hyde (478209)
- Emily Pierce (4900255)
- Emily TerAvest (4900252)
- Emmanuel Montassier (2181862)
- Evan Bolyen (3571697)
- Evguenia Kopylova (4900294)
- Frederic D. Bushman (22634)
- Gail Ackermann (618902)
- Gary D. Wu (142852)
- George M. Church (102039)
- Gholamali Rahnavard (4805520)
- Gordon Saxe (4900258)
- Grant Gogul (4900270)
- Gregory Humphrey (4900273)
- Hannah D. Holscher (786621)
- Hosein Mohimani (1327503)
- Ivo Ugrina (4384318)
- J. Bruce German (223525)
- J. Gregory Caporaso (229094)
- Jack Gilbert (139767)
- Jacob M. Wozniak (4900267)
- Jacqueline Kerr (785884)
- Jacques Ravel (5502)
- James D. Lewis (142856)
- James Gaffney (4900264)
- James T. Morton (4455616)
- Jan S. Suchodolski (107343)
- Janet K. Jansson (117759)
- Jarrad T. Hampton-Marcell (4045862)
- Jason Bobe (4900261)
- Jeff Leach (4900249)
- Jeroen Raes (6041)
- Jessica L. Green (109204)
- Jessica L. Metcalf (3253854)
- John H. Chase (276379)
- Jonathan A. Eisen (93505)
- Jonathan Monk (3548066)
- Jose A. Navas-Molina (4900303)
- Jose C. Clemente (280826)
- Joseph Petrosino (39790)
- Joshua Ladau (232530)
- Joshua Shorenstein (4900300)
- Julia Gauglitz (4900288)
- Julia Goodrich (3454907)
- Julian Jacobs (4900366)
- Justin Geier (4900327)
- Justine W. Debelius (618901)
- Karenina Sanders (4900369)
- Karsten Zengler (247723)
- Katherine S. Pollard (14217)
- Kelly S. Swanson (210272)
- Kim Lewis (20864)
- Kris Mayer (4900312)
- Kyle Bittinger (137003)
- Larry Smarr (379158)
- Lindsay DeRight Goldasich (4900375)
- Lindsay Dillon (4634245)
- Lingjing Jiang (4900372)
- Livia S. Zaramela (631780)
- Luke R. Thompson (265546)
- Lynn M. Schriml (579376)
- Maria G. Dominguez-Bello (4900348)
- Marta M. Jankowska (4900393)
- Martin Blaser (2167843)
- Matthew A. Jackson (4900291)
- Max Abramson (4900342)
- Meg Pirrung (4900318)
- Michael Minson (2140813)
- Mike Kurisu (4900345)
- Nadim Ajami (3526169)
- Naseer Sangwan (130913)
- Neil R. Gottel (3266802)
- Nicholas Chia (233775)
- Nicolai Reeve (4900354)
- Noah Fierer (121024)
- Owen White (189)
- Patrice D. Cani (152762)
- Paul Wischmeyer (4900285)
- Pavel Pevzner (29423)
- Pawel Gajer (178443)
- Philip Strandwitz (4708879)
- Phillip Hugenholtz (222811)
- Pieter C Dorrestein (4900363)
- Purna Kashyap (3460319)
- Qiyun Zhu (694450)
- Rachel Dutton (4900378)
- Rachel S. Park (4900339)
- Ramnik J. Xavier (153776)
- Ricardo Silva (4739820)
- Rob Knight (11635)
- Robert H. Mills (4900333)
- Robert R. Dunn (121034)
- Rodolfo Antonio Salido Benitez (4900321)
- Rosa Krajmalnik-Brown (430268)
- Ruth Ley (3454904)
- Sarah M. Owens (512539)
- Scott Klemmer (4900357)
- Scott T. Kelley (158464)
- Se Jin Song (3243147)
- Shyamal Peddada (3457745)
- Siavash Mirarab (3259020)
- Stefan Janssen (44445)
- Stephanie Moorman (4900306)
- Susan Holmes (243177)
- Sébastien Matamoros (4900315)
- Tanya Nguyen (4900309)
- Tanya T. Nguyen (4900351)
- Tara Schwartz (508198)
- Tifani W. Eshoo-Anton (4900297)
- Tim Vigers (4900360)
- Timothy Spector (348486)
- Tomasz Kosciolek (538142)
- Varykina G. Thackray (665721)
- Vineet Pandey (4900384)
- Will Van Treuren (745942)
- Xin Fang (134979)
- Yingfeng Chen (2457415)
- Yoshiki Vázquez-Baeza (542947)
- Zhenjiang Zech Xu (754869)
- Publication venue
- Publication date
- Field of study
The SEPP (Mirarab et al Pac Symp Biocomput 2012) fragment insertion tree used for phylogenetic analyses
American Gut Project fecal sOTU counts table
- Author
- Adam Robbins-Pianka (2016013)
- Alan Jarmusch (4900324)
- Alexander A. Aksenov (584220)
- Alexey V. Melnik (3341477)
- Alison Vrbanac (4900219)
- Allison E. Mann (4900213)
- Amnon Amir (45764)
- Angel Frazier (4900234)
- Antonio Gonzalez (2150521)
- Anupriya Tripathi (4228504)
- Arthur Cole Heale (4900390)
- Ashkaan K. Fahimipour (4900240)
- Austin Swafford (4900381)
- Bahar Behsaz (762520)
- Brennan Caitriona (4900387)
- Caitriona Brennen (4900216)
- Cameron Martino (4900222)
- Carlito Lebrilla (2083105)
- Catherine Lozupone (21305)
- Cecil M. Lewis Jr. (269417)
- Charles Raison (4900237)
- Chi Zhang (9857)
- Chris Callewaert (444348)
- Christian L. Lauber (191243)
- Christina Warinner (513402)
- Christopher A. Lowry (592172)
- Cinnamon Bloss (619703)
- Clarisse Marotz (4890046)
- Curtis Huttenhower (21159)
- Dan Knights (103804)
- Dana Willner (171081)
- Daniel McDonald (47302)
- Daniel McDonald (4899922)
- Daniela Domingos Galzerani (4900225)
- David A. Mills (128485)
- David J. Gonzalez (4449451)
- Deepak Chopra (328612)
- Dilip V. Jeste (811193)
- Dirk Gevers (50883)
- Dmitry Meleshko (4900336)
- Dominic Nguyen (4900330)
- Donna Berg-Lyons (191238)
- Dorothy D. Sears (359780)
- Doug Wendel (4900231)
- Elaine Wolfe (4900243)
- Elijah Lovelace (4900228)
- Embriette R. Hyde (478209)
- Emily Pierce (4900255)
- Emily TerAvest (4900252)
- Emmanuel Montassier (2181862)
- Evan Bolyen (3571697)
- Evguenia Kopylova (4900294)
- Frederic D. Bushman (22634)
- Gail Ackermann (618902)
- Gary D. Wu (142852)
- George M. Church (102039)
- Gholamali Rahnavard (4805520)
- Gordon Saxe (4900258)
- Grant Gogul (4900270)
- Gregory Humphrey (4900273)
- Hannah D. Holscher (786621)
- Hosein Mohimani (1327503)
- Ivo Ugrina (4384318)
- J. Bruce German (223525)
- J. Gregory Caporaso (229094)
- Jack Gilbert (139767)
- Jacob M. Wozniak (4900267)
- Jacqueline Kerr (785884)
- Jacques Ravel (5502)
- James D. Lewis (142856)
- James Gaffney (4900264)
- James T. Morton (4455616)
- Jan S. Suchodolski (107343)
- Janet K. Jansson (117759)
- Jarrad T. Hampton-Marcell (4045862)
- Jason Bobe (4900261)
- Jeff Leach (4900249)
- Jeroen Raes (6041)
- Jessica L. Green (109204)
- Jessica L. Metcalf (3253854)
- John H. Chase (276379)
- Jonathan A. Eisen (93505)
- Jonathan Monk (3548066)
- Jose A. Navas-Molina (4900303)
- Jose C. Clemente (280826)
- Joseph Petrosino (39790)
- Joshua Ladau (232530)
- Joshua Shorenstein (4900300)
- Julia Gauglitz (4900288)
- Julia Goodrich (3454907)
- Julian Jacobs (4900366)
- Justin Geier (4900327)
- Justine W. Debelius (618901)
- Karenina Sanders (4900369)
- Karsten Zengler (247723)
- Katherine S. Pollard (14217)
- Kelly S. Swanson (210272)
- Kim Lewis (20864)
- Kris Mayer (4900312)
- Kyle Bittinger (137003)
- Larry Smarr (379158)
- Lindsay DeRight Goldasich (4900375)
- Lindsay Dillon (4634245)
- Lingjing Jiang (4900372)
- Livia S. Zaramela (631780)
- Luke R. Thompson (265546)
- Lynn M. Schriml (579376)
- Maria G. Dominguez-Bello (4900348)
- Marta M. Jankowska (4900393)
- Martin Blaser (2167843)
- Matthew A. Jackson (4900291)
- Max Abramson (4900342)
- Meg Pirrung (4900318)
- Michael Minson (2140813)
- Mike Kurisu (4900345)
- Nadim Ajami (3526169)
- Naseer Sangwan (130913)
- Neil R. Gottel (3266802)
- Nicholas Chia (233775)
- Nicolai Reeve (4900354)
- Noah Fierer (121024)
- Owen White (189)
- Patrice D. Cani (152762)
- Paul Wischmeyer (4900285)
- Pavel Pevzner (29423)
- Pawel Gajer (178443)
- Philip Strandwitz (4708879)
- Phillip Hugenholtz (222811)
- Pieter C Dorrestein (4900363)
- Purna Kashyap (3460319)
- Qiyun Zhu (694450)
- Rachel Dutton (4900378)
- Rachel S. Park (4900339)
- Ramnik J. Xavier (153776)
- Ricardo Silva (4739820)
- Rob Knight (11635)
- Robert H. Mills (4900333)
- Robert R. Dunn (121034)
- Rodolfo Antonio Salido Benitez (4900321)
- Rosa Krajmalnik-Brown (430268)
- Ruth Ley (3454904)
- Sarah M. Owens (512539)
- Scott Klemmer (4900357)
- Scott T. Kelley (158464)
- Se Jin Song (3243147)
- Shyamal Peddada (3457745)
- Siavash Mirarab (3259020)
- Stefan Janssen (44445)
- Stephanie Moorman (4900306)
- Susan Holmes (243177)
- Sébastien Matamoros (4900315)
- Tanya Nguyen (4900309)
- Tanya T. Nguyen (4900351)
- Tara Schwartz (508198)
- Tifani W. Eshoo-Anton (4900297)
- Tim Vigers (4900360)
- Timothy Spector (348486)
- Tomasz Kosciolek (538142)
- Varykina G. Thackray (665721)
- Vineet Pandey (4900384)
- Will Van Treuren (745942)
- Xin Fang (134979)
- Yingfeng Chen (2457415)
- Yoshiki Vázquez-Baeza (542947)
- Zhenjiang Zech Xu (754869)
- Publication venue
- Publication date
- Field of study
The Deblur sOTU counts table for the fecal samples used in the American Gut Project manuscript. The samples were trimmed to a common read length of 125nt, and processed by Deblur (Amir et al mSystems 2017). Blooms were removed (Amir et al mSystems 2017) and any sample with fewer than 1250 sequences was omitted. This table is not rarefied,
Unweighted UniFrac distances
- Author
- Adam Robbins-Pianka (2016013)
- Alan Jarmusch (4900324)
- Alexander A. Aksenov (584220)
- Alexey V. Melnik (3341477)
- Alison Vrbanac (4900219)
- Allison E. Mann (4900213)
- Amnon Amir (45764)
- Angel Frazier (4900234)
- Antonio Gonzalez (2150521)
- Anupriya Tripathi (4228504)
- Arthur Cole Heale (4900390)
- Ashkaan K. Fahimipour (4900240)
- Austin Swafford (4900381)
- Bahar Behsaz (762520)
- Brennan Caitriona (4900387)
- Caitriona Brennen (4900216)
- Cameron Martino (4900222)
- Carlito Lebrilla (2083105)
- Catherine Lozupone (21305)
- Cecil M. Lewis Jr. (269417)
- Charles Raison (4900237)
- Chi Zhang (9857)
- Chris Callewaert (444348)
- Christian L. Lauber (191243)
- Christina Warinner (513402)
- Christopher A. Lowry (592172)
- Cinnamon Bloss (619703)
- Clarisse Marotz (4890046)
- Curtis Huttenhower (21159)
- Dan Knights (103804)
- Dana Willner (171081)
- Daniel McDonald (47302)
- Daniel McDonald (4899922)
- Daniela Domingos Galzerani (4900225)
- David A. Mills (128485)
- David J. Gonzalez (4449451)
- Deepak Chopra (328612)
- Dilip V. Jeste (811193)
- Dirk Gevers (50883)
- Dmitry Meleshko (4900336)
- Dominic Nguyen (4900330)
- Donna Berg-Lyons (191238)
- Dorothy D. Sears (359780)
- Doug Wendel (4900231)
- Elaine Wolfe (4900243)
- Elijah Lovelace (4900228)
- Embriette R. Hyde (478209)
- Emily Pierce (4900255)
- Emily TerAvest (4900252)
- Emmanuel Montassier (2181862)
- Evan Bolyen (3571697)
- Evguenia Kopylova (4900294)
- Frederic D. Bushman (22634)
- Gail Ackermann (618902)
- Gary D. Wu (142852)
- George M. Church (102039)
- Gholamali Rahnavard (4805520)
- Gordon Saxe (4900258)
- Grant Gogul (4900270)
- Gregory Humphrey (4900273)
- Hannah D. Holscher (786621)
- Hosein Mohimani (1327503)
- Ivo Ugrina (4384318)
- J. Bruce German (223525)
- J. Gregory Caporaso (229094)
- Jack Gilbert (139767)
- Jacob M. Wozniak (4900267)
- Jacqueline Kerr (785884)
- Jacques Ravel (5502)
- James D. Lewis (142856)
- James Gaffney (4900264)
- James T. Morton (4455616)
- Jan S. Suchodolski (107343)
- Janet K. Jansson (117759)
- Jarrad T. Hampton-Marcell (4045862)
- Jason Bobe (4900261)
- Jeff Leach (4900249)
- Jeroen Raes (6041)
- Jessica L. Green (109204)
- Jessica L. Metcalf (3253854)
- John H. Chase (276379)
- Jonathan A. Eisen (93505)
- Jonathan Monk (3548066)
- Jose A. Navas-Molina (4900303)
- Jose C. Clemente (280826)
- Joseph Petrosino (39790)
- Joshua Ladau (232530)
- Joshua Shorenstein (4900300)
- Julia Gauglitz (4900288)
- Julia Goodrich (3454907)
- Julian Jacobs (4900366)
- Justin Geier (4900327)
- Justine W. Debelius (618901)
- Karenina Sanders (4900369)
- Karsten Zengler (247723)
- Katherine S. Pollard (14217)
- Kelly S. Swanson (210272)
- Kim Lewis (20864)
- Kris Mayer (4900312)
- Kyle Bittinger (137003)
- Larry Smarr (379158)
- Lindsay DeRight Goldasich (4900375)
- Lindsay Dillon (4634245)
- Lingjing Jiang (4900372)
- Livia S. Zaramela (631780)
- Luke R. Thompson (265546)
- Lynn M. Schriml (579376)
- Maria G. Dominguez-Bello (4900348)
- Marta M. Jankowska (4900393)
- Martin Blaser (2167843)
- Matthew A. Jackson (4900291)
- Max Abramson (4900342)
- Meg Pirrung (4900318)
- Michael Minson (2140813)
- Mike Kurisu (4900345)
- Nadim Ajami (3526169)
- Naseer Sangwan (130913)
- Neil R. Gottel (3266802)
- Nicholas Chia (233775)
- Nicolai Reeve (4900354)
- Noah Fierer (121024)
- Owen White (189)
- Patrice D. Cani (152762)
- Paul Wischmeyer (4900285)
- Pavel Pevzner (29423)
- Pawel Gajer (178443)
- Philip Strandwitz (4708879)
- Phillip Hugenholtz (222811)
- Pieter C Dorrestein (4900363)
- Purna Kashyap (3460319)
- Qiyun Zhu (694450)
- Rachel Dutton (4900378)
- Rachel S. Park (4900339)
- Ramnik J. Xavier (153776)
- Ricardo Silva (4739820)
- Rob Knight (11635)
- Robert H. Mills (4900333)
- Robert R. Dunn (121034)
- Rodolfo Antonio Salido Benitez (4900321)
- Rosa Krajmalnik-Brown (430268)
- Ruth Ley (3454904)
- Sarah M. Owens (512539)
- Scott Klemmer (4900357)
- Scott T. Kelley (158464)
- Se Jin Song (3243147)
- Shyamal Peddada (3457745)
- Siavash Mirarab (3259020)
- Stefan Janssen (44445)
- Stephanie Moorman (4900306)
- Susan Holmes (243177)
- Sébastien Matamoros (4900315)
- Tanya Nguyen (4900309)
- Tanya T. Nguyen (4900351)
- Tara Schwartz (508198)
- Tifani W. Eshoo-Anton (4900297)
- Tim Vigers (4900360)
- Timothy Spector (348486)
- Tomasz Kosciolek (538142)
- Varykina G. Thackray (665721)
- Vineet Pandey (4900384)
- Will Van Treuren (745942)
- Xin Fang (134979)
- Yingfeng Chen (2457415)
- Yoshiki Vázquez-Baeza (542947)
- Zhenjiang Zech Xu (754869)
- Publication venue
- Publication date
- Field of study
The unweighted UniFrac distance (Lozupone and Knight AEM 2005) matrix of the 9511 fecal samples used in the American Gut paper. UniFrac was computed using Striped UniFrac (https://github.com/biocore/unifrac). Prior to execution of UniFrac, Deblur (Amir et al mSystems 2017) was run on the samples, all bloom sOTUs were removed (Amir et al mSystems 2017), and samples were rarefied to a depth of 1250 reads (Weiss et al Microbiome 2017). For the phylogeny, fragments were inserted using SEPP (Mirarab et al Pac Symp Biocomput 2012) into the Greengenes 13_5 99% OTU tree (McDonald et al ISME 2012)