The nature of the crust under Cayman Trough from gravity

This paper is not subject to U.S. copyright. The definitive version was published in Marine and Petroleum Geology 19 (2002): 971-987, doi:10.1016/S0264-8172(02)00132-0.Considerable crustal thickness variations are inferred along Cayman Trough, a slow-spreading ocean basin in the Caribbean Sea, from modeling of the gravity field. The crust to a distance of 50 km from the spreading center is only 2–3 km thick in agreement with dredge and dive results. Crustal thickness increases to ∼5.5 km at distances between 100 and 430 km west of the spreading center and to 3.5–6 km at distances between 60 and 370 km east of the spreading center. The increase in thickness is interpreted to represent serpentinization of the uppermost mantle lithosphere, rather than a true increase in the volume of accreted ocean crust. Serpentinized peridotite rocks have indeed been dredged from the base of escarpments of oceanic crust rocks in Cayman Trough. Laboratory-measured density and P-wave speed of peridotite with 40–50% serpentine are similar to the observed speed in published refraction results and to the inferred density from the model. Crustal thickness gradually increases to 7–8 km at the far ends of the trough partially in areas where sea floor magnetic anomalies were identified. Basement depth becomes gradually shallower starting 250 km west of the rise and 340 km east of the rise, in contrast to the predicted trend of increasing depth to basement from cooling models of the oceanic lithosphere. The gradual increase in apparent crustal thickness and the shallowing trend of basement depth are interpreted to indicate that the deep distal parts of Cayman Trough are underlain by highly attenuated crust, not by a continuously accreted oceanic crust.DFC was partly supported by NSF grant EAR-92-19796

The HSV-1 Latency-Associated Transcript Functions to Repress Latent Phase Lytic Gene Expression and Suppress Virus Reactivation from Latently Infected Neurons

open access articleHerpes simplex virus 1 (HSV-1) establishes life-long latent infection within sensory neurons, during which viral lytic gene expression is silenced. The only highly expressed viral gene product during latent infection is the latency-associated transcript (LAT), a non-protein coding RNA that has been strongly implicated in the epigenetic regulation of HSV-1 gene expression. We have investigated LAT-mediated control of latent gene expression using chromatin immunoprecipitation analyses and LAT-negative viruses engineered to express firefly luciferase or β-galactosidase from a heterologous lytic promoter. Whilst we were unable to determine a significant effect of LAT expression upon heterochromatin enrichment on latent HSV-1 genomes, we show that reporter gene expression from latent HSV-1 genomes occurs at a greater frequency in the absence of LAT. Furthermore, using luciferase reporter viruses we have observed that HSV-1 gene expression decreases during long-term latent infection, with a most marked effect during LAT-negative virus infection. Finally, using a fluorescent mouse model of infection to isolate and culture single latently infected neurons, we also show that reactivation occurs at a greater frequency from cultures harbouring LAT-negative HSV-1. Together, our data suggest that the HSV-1 LAT RNA represses HSV-1 gene expression in small populations of neurons within the mouse TG, a phenomenon that directly impacts upon the frequency of reactivation and the maintenance of the transcriptionally active latent reservoir

Direct and Indirect Effects -- An Information Theoretic Perspective

Information theoretic (IT) approaches to quantifying causal influences have experienced some popularity in the literature, in both theoretical and applied (e.g. neuroscience and climate science) domains. While these causal measures are desirable in that they are model agnostic and can capture non-linear interactions, they are fundamentally different from common statistical notions of causal influence in that they (1) compare distributions over the effect rather than values of the effect and (2) are defined with respect to random variables representing a cause rather than specific values of a cause. We here present IT measures of direct, indirect, and total causal effects. The proposed measures are unlike existing IT techniques in that they enable measuring causal effects that are defined with respect to specific values of a cause while still offering the flexibility and general applicability of IT techniques. We provide an identifiability result and demonstrate application of the proposed measures in estimating the causal effect of the El Ni\~no-Southern Oscillation on temperature anomalies in the North American Pacific Northwest

Sugarcane transgenics expressing MYB transcription factors show improved glucose release

Additional file 1: Figure S1. Nucleotide and amino acid alignments of MYB31 and MYB42. Alignments of published (Fornalé et al. 2006) and cloned nucleotide and amino acid sequences (ORF and UTR) for ZmMYB31 (NM_001112479) and ZmMYB42 (NM_001112539). Alignments were made using the Kyoto University Bioinformatics Center website ( http://www.genome.jp/tools-bin/clustalw ) and amino acid translations were made using the ORF region of each MYB nucleotide sequences and Vector NTI software. The start and stop codons are underlined in nucleotide sequence alignments with the 5′ and 3′ UTR regions being upstream and downstream of the start and stop codons respectively. The R2 and R3 motifs in each sequence are underlined with light gray and dark grey shading respectively

Extreme Mass-Ratio Inspirals in the Effective-One-Body Approach: Quasi-Circular, Equatorial Orbits around a Spinning Black Hole

We construct effective-one-body waveform models suitable for data analysis with LISA for extreme-mass ratio inspirals in quasi-circular, equatorial orbits about a spinning supermassive black hole. The accuracy of our model is established through comparisons against frequency-domain, Teukolsky-based waveforms in the radiative approximation. The calibration of eight high-order post-Newtonian parameters in the energy flux suffices to obtain a phase and fractional amplitude agreement of better than 1 radian and 1 % respectively over a period between 2 and 6 months depending on the system considered. This agreement translates into matches higher than 97 % over a period between 4 and 9 months, depending on the system. Better agreements can be obtained if a larger number of calibration parameters are included. Higher-order mass ratio terms in the effective-one-body Hamiltonian and radiation-reaction introduce phase corrections of at most 30 radians in a one year evolution. These corrections are usually one order of magnitude larger than those introduced by the spin of the small object in a one year evolution. These results suggest that the effective-one-body approach for extreme mass ratio inspirals is a good compromise between accuracy and computational price for LISA data analysis purposes.Comment: 21 pages, 8 figures, submitted to Phys. Rev.

Gauge Invariant Variational Approach with Fermions: the Schwinger Model

We extend the gauge invariant variational approach of Phys. Rev. D52 (1995) 3719, hep-th/9408081, to theories with fermions. As the simplest example we consider the massless Schwinger model in 1+1 dimensions. We show that in this solvable model the simple variational calculation gives exact results.Comment: 14 pages, 1 figur

Shear-Induced Brittle Failure along Grain Boundaries in Boron Carbide

The role that grain boundaries (GBs) can play on mechanical properties has been studied extensively for metals and alloys. However, for covalent solids such as boron carbide (B_4C), the role of GB on the inelastic response to applied stresses is not well established. We consider here the unusual ceramic, boron carbide (B_4C), which is very hard and lightweight but exhibits brittle impact behavior. We used quantum mechanics (QM) simulations to examine the mechanical response in atomistic structures that model GBs in B_4C under pure shear and also with biaxial shear deformation that mimics indentation stress conditions. We carried out these studies for two simple GB models including also the effect of adding Fe atoms (possible sintering aid and/or impurity) to the GB. We found that the critical shear stresses of these GB models are much lower than that for crystalline and twinned B4C. The two GB models lead to different interfacial energies. The higher interfacial energy at the GB only slightly decreases the critical shear stress but dramatically increases the critical failure strain. Doping the GB with Fe decreases the critical shear stress of at the boundary by 14% under pure shear deformation. In all GBs studied here, failure arises from deconstructing the icosahedra within the GB region under shear deformation. We find that Fe dopant interacts with icosahedra at the GB to facilitate this deconstruction of icosahedra. These results provide significant insight into designing polycrystalline B4C with improved strength and ductility

Shear-Induced Brittle Failure along Grain Boundaries in Boron Carbide

The role that grain boundaries (GBs) can play on mechanical properties has been studied extensively for metals and alloys. However, for covalent solids such as boron carbide (B_4C), the role of GB on the inelastic response to applied stresses is not well established. We consider here the unusual ceramic, boron carbide (B_4C), which is very hard and lightweight but exhibits brittle impact behavior. We used quantum mechanics (QM) simulations to examine the mechanical response in atomistic structures that model GBs in B_4C under pure shear and also with biaxial shear deformation that mimics indentation stress conditions. We carried out these studies for two simple GB models including also the effect of adding Fe atoms (possible sintering aid and/or impurity) to the GB. We found that the critical shear stresses of these GB models are much lower than that for crystalline and twinned B4C. The two GB models lead to different interfacial energies. The higher interfacial energy at the GB only slightly decreases the critical shear stress but dramatically increases the critical failure strain. Doping the GB with Fe decreases the critical shear stress of at the boundary by 14% under pure shear deformation. In all GBs studied here, failure arises from deconstructing the icosahedra within the GB region under shear deformation. We find that Fe dopant interacts with icosahedra at the GB to facilitate this deconstruction of icosahedra. These results provide significant insight into designing polycrystalline B4C with improved strength and ductility

Newtonian Hydrodynamics of the Coalescence of Black Holes with Neutron Stars I: Tidally locked binaries with a stiff equation of state

We present a detailed study of the hydrodynamical interactions in a Newtonian black hole-neutron star binary during the last stages of inspiral. We consider close binaries which are tidally locked, use a stiff equation of state (with an adiabatic index Gamma=3) throughout, and explore the effect of different initial mass ratios on the evolution of the system. We calculate the gravitational radiation signal in the quadrupole approximation. Our calculations are carried out using a Smooth Particle Hydrodynamics (SPH) code.Comment: Replaces previous version which had figures separate from the text of the paper. Now 47 pages long with 19 embedded figures (the figures are the same, they were renumbered) Uses aaspp4.st