Retroviral vector mediated gene trapping in mice

There is a great wealth of sequence information available nowadays, but this is accompanied by a serious lack of functional information. Functional genomics is an area that needs to be developed and one method being utilised is gene trapping. In this project a gene trapping approach was employed to achieve insertional mutagenesis in vitro in embryonic stem (ES) cells. These early embryo derived cell lines can be manipulated in vitro and then returned to the embryo where they participate in the normal development of a chimeric mouse. There are two types of gene trapping retroviral vectors being investigated, one is a shuttle vector which contains plasmid backbone between the long terminal repeats (LTRs) allowing the rescue of any trapped gene. The other is a splice acceptor (SA) vector, which has a SA in front of a promoterless P-geo gene. The provirus integrates into the genome of the ES cells and the trapped gene is tagged with the p-geo reporter gene. This enables trapped clones to be selected with G418 and expression patterns to be visualised by staining for p-galactosidase activity. Generation of a fused RNA transcript between the trapped gene and vector sequences facilitates cloning of the trapped gene. Using the P-geo sequence of the integrated vector, 3' RACE PCR was used to amplify a segment of the trapped gene and subsequently obtain sequence data. Two retroviral vectors of each type mentioned are examined in this project for their insertional mutagenesis ability in vitro in ES cells and subsequent analysis. Neither of the shuttle retroviral vectors gave any reproducible results. A comparison was made between the SA retroviral vectors, one containing an internal ribosome entry site (IRES), the other not. These vectors gave rise to resistant ES cell clones and subsequent 3' RACE PCR sequence data.EThOS - Electronic Theses Online ServiceGBUnited Kingdo

Retroviral vector mediated gene trapping in mice

There is a great wealth of sequence information available nowadays, but this is accompanied by a serious lack of functional information. Functional genomics is an area that needs to be developed and one method being utilised is gene trapping. In this project a gene trapping approach was employed to achieve insertional mutagenesis in vitro in embryonic stem (ES) cells. These early embryo derived cell lines can be manipulated in vitro and then returned to the embryo where they participate in the normal development of a chimeric mouse. There are two types of gene trapping retroviral vectors being investigated, one is a shuttle vector which contains plasmid backbone between the long terminal repeats (LTRs) allowing the rescue of any trapped gene. The other is a splice acceptor (SA) vector, which has a SA in front of a promoterless P-geo gene. The provirus integrates into the genome of the ES cells and the trapped gene is tagged with the p-geo reporter gene. This enables trapped clones to be selected with G418 and expression patterns to be visualised by staining for p-galactosidase activity. Generation of a fused RNA transcript between the trapped gene and vector sequences facilitates cloning of the trapped gene. Using the P-geo sequence of the integrated vector, 3' RACE PCR was used to amplify a segment of the trapped gene and subsequently obtain sequence data. Two retroviral vectors of each type mentioned are examined in this project for their insertional mutagenesis ability in vitro in ES cells and subsequent analysis. Neither of the shuttle retroviral vectors gave any reproducible results. A comparison was made between the SA retroviral vectors, one containing an internal ribosome entry site (IRES), the other not. These vectors gave rise to resistant ES cell clones and subsequent 3' RACE PCR sequence data

Quantifying the UV-continuum slopes of galaxies to z ˜ 10 using deep Hubble+Spitzer/IRAC observations

Measurements of the UV-continuum slopes β provide valuable information on the physical properties of galaxies forming in the early universe, probing the dust reddening, age, metal content, and even the escape fraction. While constraints on these slopes generally become more challenging at higher redshifts as the UV-continuum shifts out of the Hubble Space Telescope bands (particularly at z > 7), such a characterization actually becomes abruptly easier for galaxies in the redshift window z = 9.5-10.5 due to the Spitzer/Infrared Array Camera 3.6 μm-band probing the rest-UV continuum and the long wavelength baseline between this Spitzer band and the Hubble Hf160w band. Higher S/N constraints on β are possible at z ˜ 10 than at z = 8. Here, we take advantage of this opportunity and five recently discovered bright z = 9.5-10.5 galaxies to present the first measurements of the mean β for a multi-object sample of galaxy candidates at z ˜ 10. We find the measured βobs's of these candidates are -2.1 ± 0.3 ± 0.2 (random and systematic), only slightly bluer than the measured β's (βobs ≈ -1.7) at 3.5 < z < 7.5 for galaxies of similar luminosities. Small increases in the stellar ages, metallicities, and dust content of the galaxy population from z ˜ 10 to z ˜ 7 could easily explain the apparent evolution in β

To dine in or not to dine in: A comparison of food selection and preparation behaviours in those with and without food security

© 2020 The Authors. Health Promotion Journal of Australia published by John Wiley & Sons Australia, Ltd on behalf of Australian Health Promotion Association Issue addressed: Vulnerable populations are disproportionately affected by food insecurity, resulting in heightened risk of suboptimal dietary intake. Food insecure people appear to implement several coping strategies and dietary compromises to avoid hunger. Less explored in the literature is how these strategies impact consumption of food inside and outside of the home. Methods: An online survey was completed by adults (n = 1292) residing in one of five Australian states. The questionnaire comprised of the six-item US Household Food Security Survey Module, 12 socio-demographic variables and 32 questions related to elements of food literacy. Results: Food insecure respondents were more likely to frequent fast food vs (P =.002), takeaway (P \u3c .001) and food courts (P \u3c .001) than their food secure counterparts. Food secure respondents reported greater use of raw (P =.043) and fresh, pre-prepared produce (P =.002) when cooking, whereas food insecure respondents were more likely to prepare food using only frozen, pre-packaged products (P \u3c .001). No significant differences were found between food security status and the enjoyment and social bonding derived from cooking. Conclusions: Food insecure respondents appeared to be accessing a poorer quality of food through greater consumption of takeaway and fast food. These dietary compromises are most likely related to perceived financial, time or cooking facility constraints and to a lesser extent food literacy skills. So what?: This study highlights some of the health and social inequities apparent within food insecure populations. Food insecure households should be supported to access healthy fresh food and in-home cooking practices. While a multi strategy approach is required, healthy food environment policy, particularly in disadvantaged areas, should be considered to guarantee that all Australians have dignified access to nutritious food

The role of neighborhood level socioeconomic characteristics in Salmonella infections in Michigan (1997–2007): Assessment using geographic information system

<p>Abstract</p> <p>Background:</p> <p>The majority of U.S. disease surveillance systems contain incomplete information regarding socioeconomic status (SES) indicators like household or family income and educational attainment in case reports, which reduces the usefulness of surveillance data for these parameters. We investigated the association between select SES attributes at the neighborhood level and <it>Salmonella </it>infections in the three most populated counties in Michigan using a geographic information system.</p> <p>Methods:</p> <p>We obtained data on income, education, and race from the 2000 U.S. Census, and the aggregate number of laboratory-confirmed cases of salmonellosis (1997–2006) at the block group level from the Michigan Department of Community Health. We used ArcGIS to visualize the distribution, and Poisson regression analysis to study associations between potential predictor variables and <it>Salmonella </it>infections.</p> <p>Results:</p> <p>Based on data from 3,419 block groups, our final multivariate model revealed that block groups with lower educational attainment were less commonly represented among cases than their counterparts with higher education levels (< high school degree vs. ≥ college degree: rate ratio (RR) = 0.79, 95% confidence interval (CI):0.63, 0.99; ≥ and high school degree, but no college degree vs. ≥ college degree: RR = 0.84, 95% CI: 0.76, 0.92). Levels of education also showed a dose-response relation with the outcome variable, i.e., decreasing years of education was associated with a decrease in <it>Salmonella </it>infections incidence at the block group level.</p> <p>Conclusion:</p> <p>Education plays a significant role in health-seeking behavior at the population level. It is conceivable that a reporting bias may exist due to a greater detection of <it>Salmonella </it>infections among high education block groups compared to low education block groups resulting from differential access to healthcare. In addition, individuals of higher education block groups who also have greater discretionary income may eat outside the home frequently and be more likely to own pets considered reservoirs of <it>Salmonella</it>, which increase the likelihood of contracting <it>Salmonella </it>infections compared to their counterparts with lower levels of education. Public health authorities should focus on improving the level of disease detection and reporting among communities with lower income and education and further evaluate the role of higher educational attainment in the predisposition for salmonellosis.</p

A proteomic evaluation of urinary changes associated with cardiopulmonary bypass

Additional file 4: Table S4. Correlation filtered 2D DDA/IDA and SWATH protein difference values

Case-control study of disease determinants for non-typhoidal Salmonella infections among Michigan children

<p>Abstract</p> <p>Background</p> <p>Infections with <it>Salmonella </it>serotypes continue to be a significant global public health problem. In addition to contaminated foods, several other sources contribute to infections with <it>Salmonella </it>serotypes. We have assessed the role of socioeconomic factors, exposure to food, and environmental sources in the etiology of non-typhoidal <it>Salmonella </it>infections in Michigan children.</p> <p>Findings</p> <p>A case-control study among Michigan children aged ≤ 10 years was conducted. A total of 123 cases of children with laboratory-confirmed <it>Salmonella </it>infections and 139 control children, who had not experienced symptoms of gastrointestinal illness during the month prior to the interviews, were enrolled. The cases and controls were matched on age-category (<1 year, 2-<6 years and 6-10 years). Data on socioeconomic status, food intake, and environmental exposures, were collected on the queried case and control subjects. After adjusting for race and household-income the final regression multivariable model revealed that <it>Salmonella </it>infections were significantly associated with attendance of a daycare center (adjusted matched odds ratio = 5.00, 95% CI: 1.51 - 16.58), contact with cats (MOR = 2.53, 95% CI: 1.14 - 5.88), and contact with reptiles (MOR = 7.90, 95% CI: 1.52 - 41.01), during the 3 days prior to the onset of child's illness.</p> <p>Conclusions</p> <p>Study results suggest that exposure to environmental sources may play an important role in sporadic infections with <it>Salmonella </it>serotypes in children. Additional efforts are needed to educate parents and caretakers about the risk of <it>Salmonella </it>transmission to children from these sources.</p

Special Section The Prevailing Paradigm as a Hindrance to Conservation

ABSTRACT We review the history of population and ecological knowledge of the golden-cheeked warbler (Setophaga chrysoparia). We highlight how incomplete information on distribution and abundance has led to substantial misunderstanding on species status and associated conservation goals. We discuss how once a paradigm is established, subsequent studies unconsciously fortify accepted understanding regardless of the paradigm&apos;s accuracy. For the golden-cheeked warbler, understanding of the species at the time of listing in 1990 was based on either incorrect or untested assumptions of species distribution within available habitats. Adhering to untested assumptions led to development of priorities for research and management that were well-intentioned but largely misguided. Ample information on the distribution of the warbler&apos;s habitats existed, however, which should have encouraged questions into the basis of population conditions when developing management prescriptions. Current knowledge clearly indicates that a new paradigm for the warbler is needed, that being one of a widely distributed species that is preadapted to occur within a variety of environmental conditions. ß 2012 The Wildlife Society

Crop Updates 2007 - Weeds

This session covers thirty two papers from different authors: 1. ACKNOWLEDGEMENTS, Alexandra Douglas CONVENOR – WEEDS DEPARTMENT OF AGRICULTURE AND FOOD WILD RADISH MANAGEMENT 2. Decimate a wild radish seed bank in five years, Peter Newman, Sally Peltzer, Abul Hashem and Aik Cheam, Department of Agriculture and Food 3. High level of seed-set control in wild radish is achievable, Aik Cheam and Siew Lee,Department of Agriculture and Food 4. Wild radish: Best management practice, Aik Cheam and Siew Lee, Department of Agriculture and Food 5. Control of phenoxy resistant wild radish through the combined effects of wheat competition and phenoxy herbicides, Natalie Maguire and Michael Walsh, WAHRI, School of Plant Biology, University of Western Australia 6.Efficacy of florasulam on chlorsulfuron resistant and susceptible wild radish populations in Western Australia, Michael Walsh1 and Dan Cornally2, 1WAHRI, School of Plant Biology, University of Western Australia, 2Dow Agrosciences Australia 7. Does liming to increase soil pH limit the growth and development of wild radish (Raphanus raphanistrum)Matt Willis and Michael Walsh, WAHRI, School of Plant Biology, University of Western Australia IWM TECHNIQUES AND SEEDBANKS 8. Weed trimming – a potential technique to reduce weed seed set, Glen Riethmuller, Abul Hashem and Shahab Pathan, Department of Agriculture and Food 9. Burn narrow windrows in the wind, Peter Newman1and Michael Walsh2, 1Department of Agriculture and Food, 2Research Fellow, WA Herbicide Resistance Initiative 10. Winning the Weed War with the Weed Seed Wizard! Michael Renton, Sally Peltzer and Art Diggle, Department of Agriculture and Food HERBICIDE RESISTANCE AND GENE FLOW 11. Frequency of herbicide resistance in wild oat (Avena fatua) across the Western Australian wheatbelt, Mechelle Owen and Stephen Powles, WA Herbicide Resistance Initiative, School of Plant Biology, University of Western Australia 12. Pollen mediated gene flow of herbicide resistance can occur over long distances doe annual ryegrass (Lolium rigidum): Results of two years with different meteorological conditions, Roberto Busi, Robert Barrett-Lennard and Stephen B. Powles, Western Australian Herbicide Resistance Initiative, School of Plant Biology – University of Western Australia 13. Doublegee has developed resistance to metsulfuron-methyl within WA wheatbelt, Dr Abul Hashem1and Dr Shahab Pathan2, 1Senior Research Officer, and 2Research Officer, Department Agriculture and Food 14. Another case of glyphosate resistance in annual ryegrass confirmes within Western Australia, Dr Abul Hashem1and Dr Shahab Pathan2, 1Senior Research Officer, and 2Research Officer, Department Agriculture and Food 15. Glyphosate resistance in the northern NSW – implications for Western Australian farming systems, Andrew Storrie, Tamworth Agricultural Institute, NSW Department of Primary Industries ALTERNATIVES TO TRIFLURALIN, KNOCKDOWNS, TANK MIXES AND NOVEL USES 16. Alternative pre-emergent herbicides to trifluralin for annual ryegrass control, Mr David Minkey and Dr Abul Hashem, Department of Agriculture and Food, 17. Evaluation of a new pre-emergent herbicide alternative dor the control of trifluralin resistant Lolium rigidum Gaudin (annual ryegrass) in wheat and barley, Craig A. Ruchs, Syngenta Crop Protection Australia Pty Ltd and Dr Peter Boutsalis, University of Adelaide 18. Novel knockdown tank mixes: Results from 12 trials over four years, Shahab Pathan1, Abul Hashem2, Catherine Borger3, Nerys Wilkins and Julie Roche, Department of Agriculture and Food, Western Australia, and 3the University of Western Australia 19. Alternative herbicides for weed control in lupins, Peter Newman and Martin Harries, Department of Agriculture and Food 20. Novel use application of clopyealid in lupins, John Peirce, and Brad Rayner, Department of Agriculture and Food 21. A model to predict grass selective herbicide rates, John Moore, Department of Agriculture and Food CROP AND WEED MANAGEMENT 22. Inter-row weed control in wide row lupin using knockdown-based tank mixes, Dr Abul Hashem1, Ray Fulwood2 and Chris Roberts3, 1Senior Research Officer, Department of Agriculture and Food, 2Farmer, Meckering, WA, 3Technical Officer, Department of Agriculture and Food 23. Timing of weed removal in wide-row lupins, Sally Peltzer, Shahab Pathan and Paul Matson, Department of Agriculture and Food 24. The effect of row spacing and crop density on competitiveness of lupins with wild radish, Bob French and Laurie Maiolo, Department of Agriculture and Food 25. Is delayed sowing a good strategy for weed management in lupins? Bob French, Department of Agriculture and Food 26. Delayed sowing as a strategy to manage annual ryegrass, Department of Agriculture and Food HERBICIDE TOLERANCE 27. The effect of herbicides on nodulation in lupins, Lorne Mills1, Harmohinder Dhammu2 and Beng Tan1, 1Curtin University of Technology, and 2Department of Agriculture and Food 28. Response of new wheat varieties to herbicides, Harmohinder Dhammu, Department of Agriculture and Food 29. Herbicide tolerance of new barley varieties, Harmohinder Dhammu, Vince Lambert and Chris Roberts, Department of Agriculture and Food 30. Herbicide tolerance of new oat varieties, Harmohinder Dhammu, Vince Lambert and Chris Roberts, Department of Agriculture and Food OTHER WEEDY MATTERS 31. Research and extension need for wild radish and other cruciferous weeds, Aik Cheam, Department of Agriculture and Food 32. e-weed – an information resource of seasonal weed management issues, Vanessa Stewartand Julie Roche, Department of Agriculture and Foo