46 research outputs found

    Anisotropic displacement parameters for H atoms using an ONIOM approach

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    Mechanistic Studies of the Dehydrocoupling and Dehydropolymerization of Amine-Boranes Using a [Rh(Xantphos)](+) Catalyst

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    A detailed catalytic, stoichiometric, and mechanistic study on the dehydrocoupling of H3B·NMe2H and dehydropolymerization of H3B·NMeH2 using the [Rh(Xantphos)](+) fragment is reported. At 0.2 mol % catalyst loadings, dehydrocoupling produces dimeric [H2B-NMe2]2 and poly(methylaminoborane) (M(n) = 22,700 g mol(-1), PDI = 2.1), respectively. The stoichiometric and catalytic kinetic data obtained suggest that similar mechanisms operate for both substrates, in which a key feature is an induction period that generates the active catalyst, proposed to be a Rh-amido-borane, that reversibly binds additional amine-borane so that saturation kinetics (Michaelis-Menten type steady-state approximation) operate during catalysis. B-N bond formation (with H3B·NMeH2) or elimination of amino-borane (with H3B·NMe2H) follows, in which N-H activation is proposed to be turnover limiting (KIE = 2.1 ± 0.2), with suggested mechanisms that only differ in that B-N bond formation (and the resulting propagation of a polymer chain) is favored for H3B·NMeH2 but not H3B·NMe2H. Importantly, for the dehydropolymerization of H3B·NMeH2, polymer formation follows a chain growth process from the metal (relatively high degrees of polymerization at low conversions, increased catalyst loadings lead to lower-molecular-weight polymer), which is not living, and control of polymer molecular weight can be also achieved by using H2 (M(n) = 2,800 g mol(-1), PDI = 1.8) or THF solvent (M(n) = 52,200 g mol(-1), PDI = 1.4). Hydrogen is suggested to act as a chain transfer agent in a similar way to the polymerization of ethene, leading to low-molecular-weight polymer, while THF acts to attenuate chain transfer and accordingly longer polymer chains are formed. In situ studies on the likely active species present data that support a Rh-amido-borane intermediate as the active catalyst. An alternative Rh(III) hydrido-boryl complex, which has been independently synthesized and structurally characterized, is discounted as an intermediate by kinetic studies. A mechanism for dehydropolymerization is suggested in which the putative amido-borane species dehydrogenates an additional H3B·NMeH2 to form the "real monomer" amino-borane H2B═NMeH that undergoes insertion into the Rh-amido bond to propagate the growing polymer chain from the metal. Such a process is directly analogous to the chain growth mechanism for single-site olefin polymerization

    Why Don't We Ask? A Complementary Method for Assessing the Status of Great Apes

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    Species conservation is difficult. Threats to species are typically high and immediate. Effective solutions for counteracting these threats, however, require synthesis of high quality evidence, appropriately targeted activities, typically costly implementation, and rapid re-evaluation and adaptation. Conservation management can be ineffective if there is insufficient understanding of the complex ecological, political, socio-cultural, and economic factors that underlie conservation threats. When information about these factors is incomplete, conservation managers may be unaware of the most urgent threats or unable to envision all consequences of potential management strategies. Conservation research aims to address the gap between what is known and what knowledge is needed for effective conservation. Such research, however, generally addresses a subset of the factors that underlie conservation threats, producing a limited, simplistic, and often biased view of complex, real world situations. A combination of approaches is required to provide the complete picture necessary to engage in effective conservation. Orangutan conservation (Pongo spp.) offers an example: standard conservation assessments employ survey methods that focus on ecological variables, but do not usually address the socio-cultural factors that underlie threats. Here, we evaluate a complementary survey method based on interviews of nearly 7,000 people in 687 villages in Kalimantan, Indonesia. We address areas of potential methodological weakness in such surveys, including sampling and questionnaire design, respondent biases, statistical analyses, and sensitivity of resultant inferences. We show that interview-based surveys can provide cost-effective and statistically robust methods to better understand poorly known populations of species that are relatively easily identified by local people. Such surveys provide reasonably reliable estimates of relative presence and relative encounter rates of such species, as well as quantifying the main factors that threaten them. We recommend more extensive use of carefully designed and implemented interview surveys, in conjunction with more traditional field methods

    TRY plant trait database – enhanced coverage and open access

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    Plant traits - the morphological, anatomical, physiological, biochemical and phenological characteristics of plants - determine how plants respond to environmental factors, affect other trophic levels, and influence ecosystem properties and their benefits and detriments to people. Plant trait data thus represent the basis for a vast area of research spanning from evolutionary biology, community and functional ecology, to biodiversity conservation, ecosystem and landscape management, restoration, biogeography and earth system modelling. Since its foundation in 2007, the TRY database of plant traits has grown continuously. It now provides unprecedented data coverage under an open access data policy and is the main plant trait database used by the research community worldwide. Increasingly, the TRY database also supports new frontiers of trait‐based plant research, including the identification of data gaps and the subsequent mobilization or measurement of new data. To support this development, in this article we evaluate the extent of the trait data compiled in TRY and analyse emerging patterns of data coverage and representativeness. Best species coverage is achieved for categorical traits - almost complete coverage for ‘plant growth form’. However, most traits relevant for ecology and vegetation modelling are characterized by continuous intraspecific variation and trait–environmental relationships. These traits have to be measured on individual plants in their respective environment. Despite unprecedented data coverage, we observe a humbling lack of completeness and representativeness of these continuous traits in many aspects. We, therefore, conclude that reducing data gaps and biases in the TRY database remains a key challenge and requires a coordinated approach to data mobilization and trait measurements. This can only be achieved in collaboration with other initiatives

    The insect, Galleria mellonella, is a compatible model for evaluating the toxicology of okadaic acid

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    The polyether toxin, okadaic acid, causes diarrhetic shellfish poisoning in humans. Despite extensive research into its cellular targets using rodent models, we know little about its putative effect(s) on innate immunity. We inoculated larvae of the greater waxmoth, Galleria mellonella, with physiologically relevant doses of okadaic acid by direct injection into the haemocoel (body cavity) and/or gavage (force-feeding). We monitored larval survival and employed a range of cellular and biochemical assays to assess the potential harmful effects of okadaic acid. Okadaic acid at concentrations >75 ng/larva (>242 µg/kg) led to significant reductions in larval survival (>65%) and circulating haemocyte (blood cell) numbers (>50%) within 24 h post-inoculation. In the haemolymph, okadaic acid reduced haemocyte viability and increased phenoloxidase activities. In the midgut, okadaic acid induced oxidative damage as determined by increases in superoxide dismutase activity and levels of malondialdehyde (i.e., lipid peroxidation). Our observations of insect larvae correspond broadly to data published using rodent models of shellfish poisoning toxidrome, including complementary LD50 values; 206–242 μg/kg in mice, ~239 μg/kg in G. mellonella. These data support the use of this insect as a surrogate model for the investigation of marine toxins, which offers distinct ethical and financial incentives

    Down from the treetops: Red langur (Presbytis rubicunda) terrestrial behaviour

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    Using direct observations and camera traps at eight sites across Indonesian Borneo we show how red langurs (Presbytis rubicunda) are more terrestrial than previously believed, regularly coming to the ground. This unusual behavior has been found at six of the eight sites surveyed. We find that red langurs come to the ground more frequently in disturbed forests, specifically ones which have been impacted by logging, fire, and hunting, though more data are needed to confirm this as a direct correlation. We also found a trend towards decreased ground use with increased elevation of the habitat. When on the ground, red langurs are predominantly engaged in feeding (50% direct observations, 61% camera traps) and traveling (29% direct observations, 13% camera traps). Red langurs are found on the ground throughout the day, at similar times to activity periods of the apex predator, the Sunda clouded leopard (Neofelis diardi). We suggest that ground use by red langurs could be an adaptation to disturbed forest to exploit additional food sources and to facilitate travel

    An Exploration of Theoretical and Experimental Electron Density Distributions and SiO Bonded Interactions for the Silica Polymorph Coesite

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    A multipole representation of the experimental electron density distribution for the high-pressure silicapolymorph coesite, using Hirshfeld-type radial functions, has been generated with single-crystal X-raydiffraction data recorded to a sin θmax/λ value of 1.21 Å⁻¹ at 100 K. Unlike an earlier modeling of thedistribution, where a more limited data set was analyzed, deformation electron density maps display bananashapedisosurfaces in the lone-pair regions of each of the oxide anions involved in the bent SiOSi angles aswell as teardrop-shaped ones along each of the SiO bond vectors. They also display a ring torus isosurfaceabout O1, the oxide anion involved in the straight angle. Laplacian -▽²p maps display belt-shaped isosurfaces,centered near the apexes of the bent angles, that wrap about halfway around the oxide anions, with a ringtorus-shaped isosurface surrounding O1. An analysis of -▽²p revealed that the (3,-3) critical point associatedwith the anions involved in the bent angles are associated in general with larger maxima than that associatedwith the straight angle, evidence that the electron density is more locally concentrated on the oxide anionsinvolved in the bent angles. As such, these anions are asserted to be more susceptible to electrophilic attackby hydrogen, a feature that provides an experimental basis for why hydrogen in H- and Al-bearing coesiteavoids O1 and is observed to dock in the vicinity of the oxide anions involved in the bent angles. The bondcritical point properties of the experimental multipole representation of the electron density distribution forcoesite together with those for the very high-pressure silica polymorph, stishovite, conform with those calculatedfor the SiO bonded interactions for a relatively large number of silicate crystals. Not only are they similar invalue with the theoretical properties, but together they correlate with the observed SiO bond lengths as predictedby the calculations. The observed SiO bonds display a relatively wide range of ▽²p(r[c]) values between ~10e Å⁻⁵ for stishovite and ~20 e ��⁻⁵ for coesite. The larger ▽²p(r[c]) values recorded for coesite, consideredtypical of first row closed-shell ionically bonded atoms, may not be typical for a closed-shell bonded interactioninvolving second row atoms such as the four-coordinate Si in coesite. The maxima along the bond vectorsand in the lone-pair regions displayed by the experimental △p and -▽²p maps are indicative of shared covalentbonded interactions. The evidence suggests that the value of the electron density at the bond critical point fora given bonded interaction is a reliable measure of bond type: the larger the value p(r[c]), the greater theshared covalent interaction

    Effect of red blood cell shape changes on haemoglobin interactions and dynamics : A neutron scattering study: Hb Interactions and Dynamics in RBCs

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    By using a combination of experimental neutron scattering techniques, it is possible to obtain a statistical perspective on red blood cell (RBC) shape in suspensions, and the inter-relationship with protein interactions and dynamics inside the confinement of the cell membrane. In this study, we examined the ultrastructure of RBC and protein-protein interactions of haemoglobin (Hb) in them using ultra-small-angle neutron scattering and small-angle neutron scattering (SANS). In addition, we used the neutron backscattering method to access Hb motion on the ns time scale and Å length scale. Quasi-elastic neutron scattering (QENS) experiments were performed to measure diffusive motion of Hb in RBCs and in an RBC lysate. By using QENS, we probed both internal Hb dynamics and global protein diffusion, on the accessible time scale and length scale by QENS. Shape changes of RBCs and variation of intracellular Hb concentration were induced by addition of the Na + -selective ionophore monensin and the K + -selective one, valinomycin. The experimental SANS and QENS results are discussed within the framework of crowded protein solutions, where free motion of Hb is obstructed by mutual interactions
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