Rheology at the micro-scale: new tools for bio-analysis

We present a simple and non-invasive experimental procedure to measure the linear viscoelastic properties of cells by passive particle tracking microrheology. In order to do this, a generalised Langevin equation is adopted to relate the timedependent thermal fluctuations of a probe sensor, immobilised to the cell’s membrane, to the frequency-dependent viscoelastic moduli of the cell. The method has been validated by measuring the linear viscoelastic response of a soft solid and then applied to cell physiology studies. It is shown that the viscoelastic moduli are related to the cell’s cytoskeletal structure, which in this work is modulated either by inhibiting the actin/myosin-II interactions by means of blebbistatin or by varying the solution osmolarity from iso- to hypo-osmotic conditions. The insights gained from this form of rheological analysis promises to be a valuable addition to physiological studies; e.g. cell physiology during pathology and pharmacological response

Running anti-de Sitter radius from QCD-like strings

We consider renormalization effects for a bosonic QCD-like string, whose partons have $1/p^{2}$ propagators instead of Gaussian. Classically this model resembles (the bosonic part of) the projective light-cone (zero-radius) limit of a string on an AdS${}_5$ background, where Schwinger parameters give rise to the fifth dimension. Quantum effects generate dynamics for this dimension, producing an AdS${}_5$ background with a running radius. The projective light-cone is the high-energy limit: Holography is enforced dynamically.Comment: 12 page

Macrostructural analysis : unravelling polyphase glacitectonic histories

Many Pleistocene glacial profiles look extremely simple, comprising till, or glacitectonite, overlying older sediments or bedrock (Figure 4.1). In more complex sequences the till may itself be overlain by younger sediments laid down as the ice retreated or during a completely separate, later phase of advance. Macroscopically, subglacial traction tills (Evans et al., 2007) are typically massive, unstructured deposits suggesting that it should be relatively straightforward to unravel the glacitectonic deformation history recorded by the sequence. Many reconstructions do indeed look very simple, slabs of sediment have been tilted and stacked and then overridden by the glacier to cap the structure with till. Added to this is the use of vertical exaggeration which makes the whole structure look like alpine tectonics (for an example see fig. 5 in van Gijssel, 1987). Dropping the exaggeration led to the recognition that actually we were looking at much more horizontal structures, i.e. overriding nappes and not imbricated slabs (van der Wateren, 1987). Traditionally (van der Meer, 1987) glaciotectonics was thought to relate to large structures like big push moraines and not to smaller structures like drag structures underneath tills (Figure 4.2), let alone to the tills themselves. With the notion that deforming bed tills are tectonically and not sedimentologically structured and could be regarded as tectomicts (Menzies et al., 2006), comes the realisation that glacitectonics happens across a wide range of scales, from the microscopic to tens of kilometres. Only by realising the full range of glaciotectonic scales can we hope to understand the processes

Scaling issues in ensemble implementations of the Deutsch-Jozsa algorithm

We discuss the ensemble version of the Deutsch-Jozsa (DJ) algorithm which attempts to provide a "scalable" implementation on an expectation-value NMR quantum computer. We show that this ensemble implementation of the DJ algorithm is at best as efficient as the classical random algorithm. As soon as any attempt is made to classify all possible functions with certainty, the implementation requires an exponentially large number of molecules. The discrepancies arise out of the interpretation of mixed state density matrices.Comment: Minor changes, reference added, replaced with publised versio

VSP Traveltime Inversion: Near-Surface Issues

P-wave velocity information obtained from vertical seismic profiles (VSPs) can be useful in imaging subsurface structure, either by directly detecting changes in the subsurface or as an aid to the interpretation of seismic reflection data. In the shallow subsurface, P-wave velocity can change by nearly an order of magnitude over a short distance, so curved rays are needed to accurately model VSP traveltimes. We used a curved-ray inversion to estimate the velocity profile and the discrepancy principle to estimate the data noise level and to choose the optimum regularization parameter. The curved-ray routine performed better than a straight-ray inversion for synthetic models containing high-velocity contrasts. The application of the inversion to field data produced a velocity model that agreed well with prior information. These results show that curved-ray inversion should be used to obtain velocity information from VSPs in the shallow subsurface

Appetite, energy intake, and PYY3-36 responses to energy-matched continuous exercise and submaximal high-intensity exercise.

High-intensity intermittent exercise induces physiological adaptations similar to energy-matched continuous exercise, but the comparative appetite and energy balance responses are unknown. Twelve healthy males (mean ± SD: age, 22 ± 3 years; body mass index, 23.7 ± 3.0 kg·m(-2); maximum oxygen uptake, 52.4 ± 7.1 mL·kg(-1)·min(-1)) completed three 8 h trials (control, steady-state exercise (SSE), high-intensity intermittent exercise (HIIE)) separated by 1 week. Trials commenced upon completion of a standardized breakfast. Exercise was performed from hour 2 to hour 3. In SSE, 60 min of cycling at 59.5% ± 1.6% of maximum oxygen uptake was performed. In HIIE, ten 4-min cycling intervals were completed at 85.8% ± 4.0% of maximum oxygen uptake, with a 2-min rest between each interval. A standardized lunch and an ad libitum afternoon meal were provided at hours 3.75 and 7, respectively. Appetite ratings and peptide YY3-36 concentrations were measured throughout each trial. Appetite was acutely suppressed during exercise, but more so during HIIE (p < 0.05). Peptide YY3-36 concentrations increased significantly upon cessation of exercise in SSE (p = 0.002), but were highest in the hours after exercise in HIIE (p = 0.05). Exercise energy expenditure was not different between HIIE and SSE (p = 0.649), but perceived exertion was higher in HIIE (p < 0.0005). Ad libitum energy intake did not differ between trials (p = 0.833). Therefore, relative energy intake (energy intake minus the net energy expenditure of exercise) was lower in the SSE and HIIE trials than in the control trial (control, 4759 ± 1268 kJ; SSE, 2362 ± 1224 kJ; HIIE, 2523 ± 1402 kJ; p < 0.0005). An acute bout of energy-matched continuous exercise and HIIE were equally effective at inducing an energy deficit without stimulating compensatory increases in appetite

Sedimentation-consolidation of a double porosity material

This paper studies the sedimentation-consolidation of a double porosity material, such as lumpy clay. Large displacements and finite strains are accounted for in a multidimensional setting. Fundamental equations are derived using a phenomenological approach and non-equilibrium thermodynamics, as set out by Coussy [Coussy, Poromechanics, Wiley, Chichester, 2004]. These equations particularise to three non-linear partial differential equations in one dimensional context. Numerical implementation in a finite element code is currently being undertaken

Automatic Abstraction for Congruences

One approach to verifying bit-twiddling algorithms is to derive invariants between the bits that constitute the variables of a program. Such invariants can often be described with systems of congruences where in each equation $\vec{c} \cdot \vec{x} = d \mod m$, (unknown variable m)$is a power of two,$\vec{c}$is a vector of integer coefficients, and$\vec{x}$ is a vector of propositional variables (bits). Because of the low-level nature of these invariants and the large number of bits that are involved, it is important that the transfer functions can be derived automatically. We address this problem, showing how an analysis for bit-level congruence relationships can be decoupled into two parts: (1) a SAT-based abstraction (compilation) step which can be automated, and (2) an interpretation step that requires no SAT-solving. We exploit triangular matrix forms to derive transfer functions efficiently, even in the presence of large numbers of bits. Finally we propose program transformations that improve the analysis results

Forest specialist species in the urban landscape: Do different levels of urbanization affect the movements of Forest Red-tailed Black Cockatoos (Calyptorhynchus banksii naso)?

Anthropogenic landscape modification which leads to the displacement of species, is arguably one of the most profound impacts on animal movement globally. In urban landscapes, animal movement is generally impacted by varying levels of increased urbanization. However, this is species dependent and is mostly guided by the surrounding habitat. Fragmentation and habitat patch isolation must be considered at scales appropriate to the study species. Using telemetry, we test these assumptions investigating movement patterns of flocks of Forest Red-tailed Black Cockatoos (Calyptorhynchus banksii naso; RTBC) between three regions: urban, peri-urban, and forest using GPS and satellite PTT. This species occurs at varying levels of urbanization, however, how this might affect its movements is largely unknown. We did not find evidence that RTBC movement was impaired in the urban region compared with peri-urban or forest regions. It found, however, a significant within-region variation in movement extent among flocks and across regions depending on foraging resource availability and location. Differences in daily movement distance (Av. 4.96 - 16.41 km) and home range size (6.02 - 52.57 km2) between urban flocks appeared to be associated with the proximity of green spaces as roosts and foraging sites, with roadside vegetation providing important foraging resources and movement corridors. Key urban habitats were predominantly located in public nature reserves and private properties, with roadside vegetation connecting these sites for RTBC. The findings of this study highlight that conservation management for this and many other threatened species should regard the urban landscape as a critical habitat for urban adapted species. This would include management of its green spaces with connectivity and offsets from roads in mind. Furthermore, future research should focus on identifying additional key habitat sites (resource selection) and species distribution modeling, which will facilitate an active and adaptive approach towards this species' conservation management