CAMP:Co-Attention Memory Networks for Diagnosis Prediction in Healthcare

Diagnosis prediction, which aims to predict future health information of patients from historical electronic health records (EHRs), is a core research task in personalized healthcare. Although some RNN-based methods have been proposed to model sequential EHR data, these methods have two major issues. First, they cannot capture fine-grained progression patterns of patient health conditions. Second, they do not consider the mutual effect between important context (e.g., patient demographics) and historical diagnosis. To tackle these challenges, we propose a model called Co-Attention Memory networks for diagnosis Prediction (CAMP), which tightly integrates historical records, fine-grained patient conditions, and demographics with a three-way interaction architecture built on co-attention. Our model augments RNNs with a memory network to enrich the representation capacity. The memory network enables analysis of fine-grained patient conditions by explicitly incorporating a taxonomy of diseases into an array of memory slots. We instantiate the READ/WRITE operations of the memory network so that the memory cooperates effectively with the patient demographics through co-attention mechanism. Experiments on real-world datasets demonstrate that CAMP consistently performs better than state-of-the-art methods

SPACE-TA: cost-effective task allocation exploiting intradata and interdata correlations in sparse crowdsensing

Data quality and budget are two primary concerns in urban-scale mobile crowdsensing. Traditional research on mobile crowdsensing mainly takes sensing coverage ratio as the data quality metric rather than the overall sensed data error in the target-sensing area. In this article, we propose to leverage spatiotemporal correlations among the sensed data in the target-sensing area to significantly reduce the number of sensing task assignments. In particular, we exploit both intradata correlations within the same type of sensed data and interdata correlations among different types of sensed data in the sensing task. We propose a novel crowdsensing task allocation framework called SPACE-TA (SPArse Cost-Effective Task Allocation), combining compressive sensing, statistical analysis, active learning, and transfer learning, to dynamically select a small set of subareas for sensing in each timeslot (cycle), while inferring the data of unsensed subareas under a probabilistic data quality guarantee. Evaluations on real-life temperature, humidity, air quality, and traffic monitoring datasets verify the effectiveness of SPACE-TA. In the temperature- monitoring task leveraging intradata correlations, SPACE-TA requires data from only 15.5% of the subareas while keeping the inference error below 0.25°C in 95% of the cycles, reducing the number of sensed subareas by 18.0% to 26.5% compared to baselines. When multiple tasks run simultaneously, for example, for temperature and humidity monitoring, SPACE-TA can further reduce ∼10% of the sensed subareas by exploiting interdata correlations

A Comprehensive Benchmark for COVID-19 Predictive Modeling Using Electronic Health Records in Intensive Care

The COVID-19 pandemic has posed a heavy burden to the healthcare system worldwide and caused huge social disruption and economic loss. Many deep learning models have been proposed to conduct clinical predictive tasks such as mortality prediction for COVID-19 patients in intensive care units using Electronic Health Record (EHR) data. Despite their initial success in certain clinical applications, there is currently a lack of benchmarking results to achieve a fair comparison so that we can select the optimal model for clinical use. Furthermore, there is a discrepancy between the formulation of traditional prediction tasks and real-world clinical practice in intensive care. To fill these gaps, we propose two clinical prediction tasks, Outcome-specific length-of-stay prediction and Early mortality prediction for COVID-19 patients in intensive care units. The two tasks are adapted from the naive length-of-stay and mortality prediction tasks to accommodate the clinical practice for COVID-19 patients. We propose fair, detailed, open-source data-preprocessing pipelines and evaluate 17 state-of-the-art predictive models on two tasks, including 5 machine learning models, 6 basic deep learning models and 6 deep learning predictive models specifically designed for EHR data. We provide benchmarking results using data from two real-world COVID-19 EHR datasets. One dataset is publicly available without needing any inquiry and another dataset can be accessed on request. We provide fair, reproducible benchmarking results for two tasks. We deploy all experiment results and models on an online platform. We also allow clinicians and researchers to upload their data to the platform and get quick prediction results using our trained models. We hope our efforts can further facilitate deep learning and machine learning research for COVID-19 predictive modeling.Comment: Junyi Gao, Yinghao Zhu and Wenqing Wang contributed equall