Temperature Effects on the Unsaturated Permeability of the Densely Compacted GMZ01 Bentonite under Confined Conditions

International audienceIn this study, temperature controlled soil-water retention tests and unsaturated hydraulic conductivity tests for densely compacted Gaomiaozi bentonite - GMZ01 (dry density of 1.70 Mg/m3) were performed under confined conditions. Relevant soil-water retention curves (SWRCs) and unsaturated hydraulic conductivities of GMZ01 at temperatures of 40°C and 60°C were obtained. Based on these results as well as the previously obtained results at 20°C, the influence of temperature on water-retention properties and unsaturated hydraulic conductivity of the densely compacted Gaomiaozi bentonite were investigated. It was observed that: (i) water retention capacity decreases as temperature increases, and the influence of temperature depends on suction; (ii) for all the temperatures tested, the unsaturated hydraulic conductivity decreases slightly in the initial stage of hydration; the value of the hydraulic conductivity becomes constant as hydration progresses and finally, the permeability increases rapidly with suction decreases as saturation is approached; (iii) under confined conditions, the hydraulic conductivity increases as temperature increases, at a decreasing rate with temperature rise. It was also observed that the influence of temperature on the hydraulic conductivity is quite suction-dependent. At high suctions (s > 60 MPa), the temperature effect is mainly due to its influence on water viscosity; by contrast, in the range of low suctions (s < 60 MPa), the temperature effect is related to both the water viscosity and the macro-pores closing phenomenon that is supposed to be temperature dependent

iTAR: A Web Server for Identifying Target Genes of Transcription Factors using ChIP-Seq or ChIP-Chip Data

Chromatin immunoprecipitation followed by massively parallel DNA sequencing (ChIP-seq) or microarray hybridization (ChIP-chip) has been widely used to determine the genomic occupation of transcription factors (TFs). We have previously developed a probabilistic method, called TIP (Target Identification from Profiles), to identify TF target genes using ChIP-seq/ChIP-chip data. To achieve high specificity, TIP applies a conservative method to estimate significance of target genes, with the trade-off being a relatively low sensitivity of target gene identification compared to other methods. Additionally, TIP’s output does not render binding-peak locations or intensity, information highly useful for visualization and general experimental biological use, while the variability of ChIP-seq/ChIP-chip file formats has made input into TIP more difficult than desired. To improve upon these facets, here we present are fined TIP with key extensions. First, it implements a Gaussian mixture model for p-value estimation, increasing target gene identification sensitivity and more accurately capturing the shape of TF binding profile distributions. Second, it enables the incorporation of TF binding-peak data by identifying their locations in significant target gene promoter regions and quantifies their strengths. Finally, for full ease of implementation we have incorporated it into a web server (http://syslab3.nchu.edu.tw/iTAR/) that enables flexibility of input file format, can be used across multiple species and genome assembly versions, and is freely available for public use. The web server additionally performs GO enrichment analysis for the identified target genes to reveal the potential function of the corresponding TF

Interactions between Amyloid-β and Hemoglobin: Implications for Amyloid Plaque Formation in Alzheimer's Disease

Accumulation of amyloid-β (Aβ) peptides in the brain is one of the central pathogenic events in Alzheimer's disease (AD). However, why and how Aβ aggregates within the brain of AD patients remains elusive. Previously, we demonstrated hemoglobin (Hb) binds to Aβ and co-localizes with the plaque and vascular amyloid deposits in post-mortem AD brains. In this study, we further characterize the interactions between Hb and Aβ in vitro and in vivo and report the following observations: 1) the binding of Hb to Aβ required iron-containing heme; 2) other heme-containing proteins, such as myoglobin and cytochrome C, also bound to Aβ; 3) hemin-induced cytotoxicity was reduced in neuroblastoma cells by low levels of Aβ; 4) Hb was detected in neurons and glial cells of post-mortem AD brains and was up-regulated in aging and APP/PS1 transgenic mice; 5) microinjection of human Hb into the dorsal hippocampi of the APP/PS1 transgenic mice induced the formation of an envelope-like structure composed of Aβ surrounding the Hb droplets. Our results reveal an enhanced endogenous expression of Hb in aging brain cells, probably serving as a compensatory mechanism against hypoxia. In addition, Aβ binds to Hb and other hemoproteins via the iron-containing heme moiety, thereby reducing Hb/heme/iron-induced cytotoxicity. As some of the brain Hb could be derived from the peripheral circulation due to a compromised blood-brain barrier frequently observed in aged and AD brains, our work also suggests the genesis of some plaques may be a consequence of sustained amyloid accretion at sites of vascular injury

12β,14-Dihy­droxy-3-oxo-5β,20(22)-cardenolide monohydrate

The title compound, digoxigenone, C23H30O5·H2O, was biotransformed from digoxigenin. In the crystal, inter­molecular O—H⋯O hydrogen bonds contribute to the formation of a three-dimensional supra­molecular structure. The title compound has three fused six-membered rings (A,B,C) and two non-fused five-membered rings (D,E). As in other structures, compound nucleus has a cis-trans-cis conformation for the A-B,B-C,C-D ring junctions with rings A, B and C exhibiting chair conformations

Reducing toxicity and increasing efficiency: aconitine with liquiritin and glycyrrhetinic acid regulate calcium regulatory proteins in rat myocardial cell

Background: Compatibility of Radix Aconiti Carmichaeli and Liquorice is known to treat heart diseases such as heart failure and cardiac arrhythmias. This work answers the question that whether the active components (Aconitine, Liquiritin and Glycyrrhetinic Acid) of Radix Aconiti Carmichaeli and Liquorice could result in regulating intracellular calcium homeostasis and calcium cycling, and thereby verifies the therapeutic material basis.Materials and Methods: The myocardial cells were divided into twelve groups randomly as control group, Aconitine group, nine different dose groups that orthogonal combined with Aconitine, Liquiritin and Glycyrrhetinic Acid, and Verapamil group. The myocardial cellular survival rate and morphology were assessed. The expression of calcium regulation protein(RyR2、NCX1、DHPR-a1) in the myocardial cell by Western-blotting.Results: The results exhibited that Aconitine (120 uM) significantly damaged on myocardial cell, decreased the survival rate and expression of Na+/Ca2+ exchangers (NCX1) and dihydropteridine reducta-α1 (DHPR-a1), and increased the expression of ryanodine receptor type2 (RyR2) obviously. The compatibility groups (Aconitine, Liquiritin and Glycyrrhetinic Acid) all could against the damage on the myocardial cell by Aconitine at different levels.Conclusion: Aconitine with Liquiritin and Glycyrrhetinic Acid may regulate the expression of calcium-regulated proteins to protect myocardial cells from damage.Keywords: Aconitine, Liquiritin, Glycyrrhetinic Acid, myocardial cell, calcium regulator

ActionPrompt: Action-Guided 3D Human Pose Estimation With Text and Pose Prompting

Recent 2D-to-3D human pose estimation (HPE) utilizes temporal consistency across sequences to alleviate the depth ambiguity problem but ignore the action related prior knowledge hidden in the pose sequence. In this paper, we propose a plug-and-play module named Action Prompt Module (APM) that effectively mines different kinds of action clues for 3D HPE. The highlight is that, the mining scheme of APM can be widely adapted to different frameworks and bring consistent benefits. Specifically, we first present a novel Action-related Text Prompt module (ATP) that directly embeds action labels and transfers the rich language information in the label to the pose sequence. Besides, we further introduce Action-specific Pose Prompt module (APP) to mine the position-aware pose pattern of each action, and exploit the correlation between the mined patterns and input pose sequence for further pose refinement. Experiments show that APM can improve the performance of most video-based 2D-to-3D HPE frameworks by a large margin.Comment: 6 pages, 4 figures, 2023ICM

Two-sample density-based empirical likelihood ratio tests based on paired data, with application to a treatment study of Attention- Deficit/Hyperactivity Disorder and Severe Mood Dysregulation

Abstract It is a common practice to conduct medical trials in order to compare a new therapy with a standard-ofcare based on paired data consisted of pre-and post-treatment measurements. In such cases, a great interest often lies in identifying treatment effects within each therapy group as well as detecting a between-group difference. In this article, we propose exact nonparametric tests for composite hypotheses related to treatment effects to provide efficient tools that compare study groups utilizing paired data. When correctly specified, parametric likelihood ratios can be applied, in an optimal manner, to detect a difference in distributions of two samples based on paired data. The recent statistical literature introduces density-based empirical likelihood methods to derive efficient nonparametric tests that approximate most powerful Neyman-Pearson decision rules. We adapt and extend these methods to deal with various testing scenarios involved in the two-sample comparisons based on paired data. We show the proposed procedures outperform classical approaches. An extensive Monte Carlo study confirms that the proposed approach is powerful and can be easily applied to a variety of testing problems in practice. The proposed technique is applied for comparing two therapy strategies to treat children&apos;s attention deficit/hyperactivity disorder and severe mood dysregulation

Effect of rs1344706 in the ZNF804A gene on the brain network.

ZNF804A rs1344706 (A/C) was the first SNP that reached genome-wide significance for schizophrenia. Recent studies have linked rs1344706 to functional connectivity among specific brain regions. However, no study thus far has examined the role of this SNP in the entire functional connectome. In this study, we used degree centrality to test the role of rs1344706 in the whole-brain voxel-wise functional connectome during the resting state. 52 schizophrenia patients and 128 healthy controls were included in the final analysis. In our whole-brain analysis, we found a significant interaction effect of genotype&nbsp;×&nbsp;diagnosis at the precuneus (PCU) (cluster size&nbsp;=&nbsp;52 voxels, peak voxel MNI coordinates: x&nbsp;=&nbsp;9, y&nbsp;=&nbsp;-&nbsp;69, z&nbsp;=&nbsp;63, F&nbsp;=&nbsp;32.57, FWE corrected P&nbsp;&lt;&nbsp;0.001). When we subdivided the degree centrality network according to anatomical distance, the whole-brain analysis also found a significant interaction effect of genotype&nbsp;×&nbsp;diagnosis at the PCU with the same peak in the short-range degree centrality network (cluster size&nbsp;=&nbsp;72 voxels, F&nbsp;=&nbsp;37.29, FWE corrected P&nbsp;&lt;&nbsp;0.001). No significant result was found in the long-range degree centrality network. Our results elucidated the contribution of rs1344706 to functional connectivity within the brain network, and may have important implications for our understanding of this risk gene's role in functional dysconnectivity in schizophrenia