Comparison of Algorithms and Parameterisations for Infiltration into Organic-Covered Permafrost Soils

Infiltration into frozen and unfrozen soils is critical in hydrology, controlling active layer soil water dynamics and influencing runoff. Few Land Surface Models (LSMs) and Hydrological Models (HMs) have been developed, adapted or tested for frozen conditions and permafrost soils. Considering the vast geographical area influenced by freeze/thaw processes and permafrost, and the rapid environmental change observed worldwide in these regions, a need exists to improve models to better represent their hydrology. In this study, various infiltration algorithms and parameterisation methods, which are commonly employed in current LSMs and HMs were tested against detailed measurements at three sites in Canada’s discontinuous permafrost region with organic soil depths ranging from 0.02 to 3 m. Field data from two consecutive years were used to calibrate and evaluate the infiltration algorithms and parameterisations. Important conclusions include: (1) the single most important factor that controls the infiltration at permafrost sites is ground thaw depth, (2) differences among the simulated infiltration by different algorithms and parameterisations were only found when the ground was frozen or during the initial fast thawing stages, but not after ground thaw reaches a critical depth of 15 to 30 cm, (3) despite similarities in simulated total infiltration after ground thaw reaches the critical depth, the choice of algorithm influenced the distribution of water among the soil layers, and (4) the ice impedance factor for hydraulic conductivity, which is commonly used in LSMs and HMs, may not be necessary once the water potential driven frozen soil parameterisation is employed. Results from this work provide guidelines that can be directly implemented in LSMs and HMs to improve their application in organic covered permafrost soils

Habitat Characteristics of Black Crappie Nest Sites in an Illinois Impoundment

Ten nest colonies of black crappie Pomoxis nigromaculatus were visually located and verified by angling in Campus Lake, a small urban impoundment in southern Illinois. Habitat characteristics were measured at these nest sites and compared to habitat measurements obtained from 45 unused sites. Seven habitat characteristics (substrate firmness, temperature, dissolved oxygen, distance to deep water [3.8-m depth contour], substrate type, vegetation height, and vegetation density) were significantly different between nest sites and unused sites. Although temperature and dissolved oxygen were significantly different between nest sites and unused sites, all values were within the suitable range for black crappie spawning to occur. Black crappies selected nest sites close to deep water with firm substrates and low vegetation height and density. Our results present insight on habitat characteristics of black crappie spawning locations in a small urban impoundment. Interestingly, we located several black crappie nesting colonies with more than 10 individual nests in close proximity to one another; colonial nesting by black crappies has not previously been reported in the literature. Furthermore, we suggest that degree of shoreline modification and other anthropogenic influences in and adjacent to Campus Lake did not affect black crappie nest site selection. Black crappie nest sites in Campus Lake were always located near deep water (3.8 m), in low-density, short vegetation, and on firm clay or sand substrate; because nest site selection can influence earlylife survival and recruitment of black crappie, the availability of these habitat characteristics may regulate black crappie population demographics in Campus Lake. Efforts to limit sediment inputs will be important for maintaining suitable black crappie spawning habitat in Campus Lake and other small impoundments

Insulin-like peptide 3 (INSL3) in congenital hypogonadotrophic hypogonadism (CHH) in boys with delayed puberty and adult men

Background: Delayed puberty in males is almost invariably associated with constitutional delay of growth and puberty (CDGP) or congenital hypogonadotrophic hypogonadism (CHH). Establishing the cause at presentation is challenging, with “red flag” features of CHH commonly overlooked. Thus, several markers have been evaluated in both the basal state or after stimulation e.g. with gonadotrophin releasing hormone agonist (GnRHa). Insulin-like peptide 3 (INSL3) is a constitutive secretory product of Leydig cells and thus a possible candidate marker, but there have been limited data examining its role in distinguishing CDGP from CHH. In this manuscript, we assess INSL3 and inhibin B (INB) in two cohorts: 1. Adolescent boys with delayed puberty due to CDGP or CHH and 2. Adult men, both eugonadal and having CHH. Materials and methods: Retrospective cohort studies of 60 boys with CDGP or CHH, as well as 44 adult men who were either eugonadal or had CHH, in whom INSL3, INB, testosterone and gonadotrophins were measured. Cohort 1: Boys with delayed puberty aged 13-17 years (51 with CDGP and 9 with CHH) who had GnRHa stimulation (subcutaneous triptorelin 100mcg), previously reported with respect to INB. Cohort 2: Adult cohort of 44 men (22 eugonadal men and 22 men with CHH), previously reported with respect to gonadotrophin responses to kisspeptin-54. Results: Median INSL3 was higher in boys with CDGP than CHH (0.35 vs 0.15 ng/ml; p=0.0002). Similarly, in adult men, median INSL3 was higher in eugonadal men than CHH (1.08 vs 0.05 ng/ml; p<0.0001). However, INSL3 more accurately differentiated CHH in adult men than in boys with delayed puberty (auROC with 95% CI in adult men: 100%, 100-100%; boys with delayed puberty: 86.7%, 77.7-95.7%). Median INB was higher in boys with CDGP than CHH (182 vs 59 pg/ml; p<0.0001). Likewise, in adult men, median INB was higher in eugonadal men than CHH (170 vs 36.5 pg/ml; p<0.0001). INB performed better than INSL3 in differentiating CHH in boys with delayed puberty (auROC 98.5%, 95.9-100%), than in adult men (auROC 93.9%, 87.2-100%). Conclusion: INSL3 better identifies CHH in adult men, whereas INB better identifies CHH in boys with delayed puberty

The Structure of Spatial Localization

Material objects, such as tables and chairs, have an intimate relationship with space. They have to be somewhere. They must possess an address at which they are found. Under this aspect, they are in good company. Events, too, such as Caesar’s death and John’s buttering of the toast, and more elusive entities, such as the surface of the table, have an address, difficult as it may be to specify. A stronger notion presents itself, though. Some entities may not only be located at an address; they may also own (as it were) the place at which they are located, so as to exclude other entities from being located at the same address. Thus, for certain kinds of entities, no two tokens of the same kind can be located at the same place at the same time. This is typically the case with material objects. Likewise, no two particularized properties of the same level or degree of determinacy can be located at the same place at the same time (although particularized properties of different degree, such as the red of this table and the color of this table, can). Other entities seem to evade the restriction. Two events can be perfectly co-located without competing for their address. Or, to use a different terminology, events do not occupy the spatial region at which they are located, and can therefore share it with other events. The rotation of the Earth and the cooling down of the Earth take place at exactly the same regio

Molecular analysis using DHPLC of cystic fibrosis: increase of the mutation detection rate among the affected population in Central Italy

BACKGROUND: Cystic fibrosis (CF) is a multisystem disorder characterised by mutations of the CFTR gene, which encodes for an important component in the coordination of electrolyte movement across of epithelial cell membranes. Symptoms are pulmonary disease, pancreatic exocrine insufficiency, male infertility and elevated sweat concentrations. The CFTR gene has numerous mutations (>1000) and functionally important polymorphisms (>200). Early identification is important to provide appropriate therapeutic interventions, prognostic and genetic counselling and to ensure access to specialised medical services. However, molecular diagnosis by direct mutation screening has proved difficult in certain ethnic groups due to allelic heterogeneity and variable frequency of causative mutations. METHODS: We applied a gene scanning approach using DHPLC system for analysing specifically all CFTR exons and characterise sequence variations in a subgroup of CF Italian patients from the Lazio region (Central Italy) characterised by an extensive allelic heterogeneity. RESULTS: We have identified a total of 36 different mutations representing 88% of the CF chromosomes. Among these are two novel CFTR mutations, including one missense (H199R) and one microdeletion (4167delCTAAGCC). CONCLUSION: Using this approach, we were able to increase our standard power rate of mutation detection of about 11% (77% vs. 88%)

A synthesis of three decades of hydrological research at Scotty Creek, NWT, Canada

Scotty Creek, Northwest Territories (NWT), Canada, has been the focus of hydrological research for nearly three decades. Over this period, field and modelling studies have generated new insights into the thermal and physical mechanisms governing the flux and storage of water in the wetland-dominated regions of discontinuous permafrost that characterises much of the Canadian and circumpolar subarctic. Research at Scotty Creek has coincided with a period of unprecedented climate warming, permafrost thaw, and resulting land cover transformations including the expansion of wetland areas and loss of forests. This paper (1) synthesises field and modelling studies at Scotty Creek, (2) highlights the key insights of these studies on the major water flux and storage processes operating within and between the major land cover types, and (3) provides insights into the rate and pattern of the permafrost-thaw-induced land cover change and how such changes will affect the hydrology and water resources of the study region.</p