Genomic Expansion of Magnetotactic Bacteria Reveals an Early Common Origin of Magnetotaxis with Lineage-specific Evolution

The origin and evolution of magnetoreception, which in diverse prokaryotes and protozoa is known as magnetotaxis and enables these microorganisms to detect Earth’s magnetic field for orientation and navigation, is not well understood in evolutionary biology. The only known prokaryotes capable of sensing the geomagnetic field are magnetotactic bacteria (MTB), motile microorganisms that biomineralize intracellular, membrane-bounded magnetic single-domain crystals of either magnetite (Fe3O4) or greigite (Fe3S4) called magnetosomes. Magnetosomes are responsible for magnetotaxis in MTB. Here we report the first large-scale metagenomic survey of MTB from both northern and southern hemispheres combined with 28 genomes from uncultivated MTB. These genomes expand greatly the coverage of MTB in the Proteobacteria, Nitrospirae, and Omnitrophica phyla, and provide the first genomic evidence of MTB belonging to the Zetaproteobacteria and “Candidatus Lambdaproteobacteria” classes. The gene content and organization of magnetosome gene clusters, which are physically grouped genes that encode proteins for magnetosome biosynthesis and organization, are more conserved within phylogenetically similar groups than between different taxonomic lineages. Moreover, the phylogenies of core magnetosome proteins form monophyletic clades. Together, these results suggest a common ancient origin of iron-based (Fe3O4 and Fe3S4) magnetotaxis in the domain Bacteria that underwent lineage-specific evolution, shedding new light on the origin and evolution of biomineralization and magnetotaxis, and expanding significantly the phylogenomic representation of MTB

Advanced Experimental Techniques for RF and DC Breakdown Research

Advanced experimental techniques are being developed to analyze RF and DC breakdown events. First measurements with a specially built spectrometer have been made with a DC spark setup [1] at CERN and will soon be installed in the CLIC 30GHz accelerating structure test stand to allow comparison between DC and RF breakdown phenomena. This spectrometer is able to measure the light intensity development during a breakdown in narrow wavelength bands in the visible and near infrared range. This will give information about the important aspects of the breakdown including chemical elements, temperature, plasma parameters and possibly precursors of a breakdown

Self diffusion in a system of interacting Langevin particles

The behavior of the self diffusion constant of Langevin particles interacting via a pairwise interaction is considered. The diffusion constant is calculated approximately within a perturbation theory in the potential strength about the bare diffusion constant. It is shown how this expansion leads to a systematic double expansion in the inverse temperature $\beta$ and the particle density $\rho$. The one-loop diagrams in this expansion can be summed exactly and we show that this result is exact in the limit of small $\beta$ and $\rho\beta$ constant. The one-loop result can also be re-summed using a semi-phenomenological renormalization group method which has proved useful in the study of diffusion in random media. In certain cases the renormalization group calculation predicts the existence of a diverging relaxation time signalled by the vanishing of the diffusion constant -- possible forms of divergence coming from this approximation are discussed. Finally, at a more quantitative level, the results are compared with numerical simulations, in two-dimensions, of particles interacting via a soft potential recently used to model the interaction between coiled polymers.Comment: 12 pages, 8 figures .ep

"Das Ende der Naturgeschichte" neu verhandelt : Historisch genealogische oder epigenetische Neukonzeption der Natur?

According to the topos “Ende der Naturgeschichte” (Foucault, Lepenies) a veritable historical understanding of Nature came into being around 1800. The contribution re-considers this thesis and discusses in particular the historical speculations in deistic cosmologies as well as in the context of the idea of a “Great Chain of Beings.” Finally attention is drawn to the implications of the fact that the then new physiological understanding of development (ontogenesis) as an epigenetic process became a naturalistic model of historical development in general just in this period

Grain size limits derived from 3.6 {\mu}m and 4.5 {\mu}m coreshine

Recently discovered scattered light from molecular cloud cores in the wavelength range 3-5 {\mu}m (called "coreshine") seems to indicate the presence of grains with sizes above 0.5 {\mu}m. We aim to analyze 3.6 and 4.5 {\mu}m coreshine from molecular cloud cores to probe the largest grains in the size distribution. We analyzed dedicated deep Cycle 9 Spitzer IRAC observations in the 3.6 and 4.5 {\mu}m bands for a sample of 10 low-mass cores. We used a new modeling approach based on a combination of ratios of the two background- and foreground-subtracted surface brightnesses and observed limits of the optical depth. The dust grains were modeled as ice-coated silicate and carbonaceous spheres. We discuss the impact of local radiation fields with a spectral slope differing from what is seen in the DIRBE allsky maps. For the cores L260, ecc806, L1262, L1517A, L1512, and L1544, the model reproduces the data with maximum grain sizes around 0.9, 0.5, 0.65, 1.5, 0.6, and > 1.5 {\mu}m, respectively. The maximum coreshine intensities of L1506C, L1439, and L1498 in the individual bands require smaller maximum grain sizes than derived from the observed distribution of band ratios. Additional isotropic local radiation fields with a spectral shape differing from the DIRBE map shape do not remove this discrepancy. In the case of Rho Oph 9, we were unable to reliably disentangle the coreshine emission from background variations and the strong local PAH emission. Considering surface brightness ratios in the 3.6 and 4.5 {\mu}m bands across a molecular cloud core is an effective method of disentangling the complex interplay of structure and opacities when used in combination with observed limits of the optical depth.Comment: 23 pages, 18 figures, accepted for publication in A&

Crossover from stationary to aging regime in glassy dynamics

We study the non-equilibrium dynamics of the spherical p-spin models in the scaling regime near the plateau and derive the corresponding scaling functions for the correlators. Our main result is that the matching between different time regimes fixes the aging function in the aging regime to $h(t)=\exp(t^{1-\mu})$. The exponent $\mu$ is related to the one giving the length of the plateau. Interestingly $1-\mu$ is quickly very small when one goes away from the dynamic transition temperature in the glassy phase. This gives new light on the interpretation of experiments and simulations where simple aging was found to be a reasonable but not perfect approximation, which could be attributed to the existence of a small but non-zero stretching exponent.Comment: 7 pages+2 figure

Perturbation theory for the effective diffusion constant in a medium of random scatterer

We develop perturbation theory and physically motivated resummations of the perturbation theory for the problem of a tracer particle diffusing in a random media. The random media contains point scatterers of density $\rho$ uniformly distributed through out the material. The tracer is a Langevin particle subjected to the quenched random force generated by the scatterers. Via our perturbative analysis we determine when the random potential can be approximated by a Gaussian random potential. We also develop a self-similar renormalisation group approach based on thinning out the scatterers, this scheme is similar to that used with success for diffusion in Gaussian random potentials and agrees with known exact results. To assess the accuracy of this approximation scheme its predictions are confronted with results obtained by numerical simulation.Comment: 22 pages, 6 figures, IOP (J. Phys. A. style