Transcription and the Pitch Angle of DNA

The question of the value of the pitch angle of DNA is visited from the perspective of a geometrical analysis of transcription. It is suggested that for transcription to be possible, the pitch angle of B-DNA must be smaller than the angle of zero-twist. At the zero-twist angle the double helix is maximally rotated and its strain-twist coupling vanishes. A numerical estimate of the pitch angle for B-DNA based on differential geometry is compared with numbers obtained from existing empirical data. The crystallographic studies shows that the pitch angle is approximately 38 deg., less than the corresponding zero-twist angle of 41.8 deg., which is consistent with the suggested principle for transcription.Comment: 7 pages, 3 figures; v2: minor modifications; v3: major modifications compared to v2. Added discussion about transcription, and reference

Complementarity and Scientific Rationality

Bohr's interpretation of quantum mechanics has been criticized as incoherent and opportunistic, and based on doubtful philosophical premises. If so Bohr's influence, in the pre-war period of 1927-1939, is the harder to explain, and the acceptance of his approach to quantum mechanics over de Broglie's had no reasonable foundation. But Bohr's interpretation changed little from the time of its first appearance, and stood independent of any philosophical presuppositions. The principle of complementarity is itself best read as a conjecture of unusually wide scope, on the nature and future course of explanations in the sciences (and not only the physical sciences). If it must be judged a failure today, it is not because of any internal inconsistency.Comment: 29 page

Transient effects on electron spin observation

In an earlier publication we addressed the problem of splitting an electron beam in the Stern-Gerlach experiment. In contrast to arguments put forward in the early days of quantum theory, we concluded that there are no issues of principle preventing the observation of electron spin during free flight. In that paper, however, we considered only a sudden switch off of the separating magnetic field. In this work we consider the possible effects of finite switching times at the beginning and the end of the interaction period. We consider a model where the coupling between the electron and the field is time dependent. As a result of the time dependence, the field also acquires an electric component, but this seems to cause no significant change of our conclusions. On the other hand, the smooth change of the interaction enforces the same longitudinal velocity on the electron both at the beginning and end of the interaction period because of conservation laws; this effect was missing in our earlier calculations. As the electrons are supposed to travel as a beam, this feature helps by restoring the beam quality after the interaction

A simple description of the states 0+0^+ and 2+2^+ in 168Er^{168}Er

A sixth-order quadrupole boson Hamiltonian is used to describe 26 states $0^+$ and 67 states $2^+$ which have been recently identified in $^{168}Er$. Two closed expressions are alternatively used for energy levels. One corresponds to a semi-classical approach while the other one represents the exact eigenvalue of the model Hamiltonian. The semi-classical expression involves four parameters, while the exact eigenvalue is determined by five parameters. In each of the two descriptions a least square fit procedure is adopted. Both expressions provide a surprisingly good agreement with the experimental data.Comment: 9 pages, 5 figure

Objective properties from subjective quantum states: Environment as a witness

We study the emergence of objective properties in open quantum systems. In our analysis, the environment is promoted from a passive role of reservoir selectively destroying quantum coherence, to an active role of amplifier selectively proliferating information about the system. We show that only preferred pointer states of the system can leave a redundant and therefore easily detectable imprint on the environment. Observers who--as it is almost always the case--discover the state of the system indirectly (by probing a fraction of its environment) will find out only about the corresponding pointer observable. Many observers can act in this fashion independently and without perturbing the system: they will agree about the state of the system. In this operational sense, preferred pointer states exist objectively.Comment: 5 pages, 1 figure, extensive changes, presentation improve

From finite nuclei to the nuclear liquid drop: leptodermous expansion based on the self-consistent mean-field theory

The parameters of the nuclear liquid drop model, such as the volume, surface, symmetry, and curvature constants, as well as bulk radii, are extracted from the non-relativistic and relativistic energy density functionals used in microscopic calculations for finite nuclei. The microscopic liquid drop energy, obtained self-consistently for a large sample of finite, spherical nuclei, has been expanded in terms of powers of A^{-1/3} (or inverse nuclear radius) and the isospin excess (or neutron-to-proton asymmetry). In order to perform a reliable extrapolation in the inverse radius, the calculations have been carried out for nuclei with huge numbers of nucleons, of the order of 10^6. The Coulomb interaction has been ignored to be able to approach nuclei of arbitrary sizes and to avoid radial instabilities characteristic of systems with very large atomic numbers. The main contribution to the fluctuating part of the binding energy has been removed using the Green's function method to calculate the shell correction. The limitations of applying the leptodermous expansion to actual nuclei are discussed. While the leading terms in the macroscopic energy expansion can be extracted very precisely, the higher-order, isospin-dependent terms are prone to large uncertainties due to finite-size effects.Comment: 13 pages revtex4, 7 eps figures, submitted to Phys. Rev.

Reply to Comment by Galapon on 'Almost-periodic time observables for bound quantum systems'

In a recent paper [1] (also at http://lanl.arxiv.org/abs/0803.3721), I made several critical remarks on a 'Hermitian time operator' proposed by Galapon [2] (also at http://lanl.arxiv.org/abs/quant-ph/0111061). Galapon has correctly pointed out that remarks pertaining to 'denseness' of the commutator domain are wrong [3]. However, the other remarks still apply, and it is further noted that a given quantum system can be a member of this domain only at a set of times of total measure zero.Comment: 3 page

A new puzzle for random interaction

We continue a series of numerical experiments on many-body systems with random two-body interactions, by examining correlations in ratios in excitation energies of yrast $J$ = 0, 2, 4, 6, 8 states. Previous studies, limited only to $J$ = 0,2,4 states, had shown strong correlations in boson systems but not fermion systems. By including $J \ge 6$ states and considering different scatter plots, strong and realistic correlations appear in both boson and fermion systems. Such correlations are a challenge to explanations of random interactions.Comment: 4 pages, 4 figure

Glauber-model analysis of total reaction cross sections for Ne, Mg, Si, and S isotopes with Skyrme-Hartree-Fock densities

A systematic analysis is made on the total reaction cross sections for Ne, Mg, Si, and S isotopes. The high-energy nucleus-nucleus collision is described based on the Glauber model. Using the Skyrme-Hartree-Fock method in the three-dimensional grid-space representation, we determine the nuclear density distribution for a wide range of nuclei self-consistently without assuming any spatial symmetry. The calculated total reaction cross sections consistently agree with the recent cross section data on Ne$+^{12}$C collision at 240$A$\,MeV, which makes it possible to discuss the radius and deformation of the isotopes. The total reaction cross sections for Mg$+^{12}$C, Si$+^{12}$C and S$+^{12}$C cases are predicted for future measurements. We also find that the high-energy cross section data for O, Ne, and Mg isotopes on a $^{12}$C target at around 1000\,$A$MeV can not be reproduced consistently with the corresponding data at 240\,$A$MeV.Comment: 10 pages, 14 figure