Replication of plasmids derived from Shiga toxinconverting bacteriophages in starved Escherichia coli

The pathogenicity of Shiga toxin-producing Escherichia coli (STEC) depends on the expression of stx genes that are located on lambdoid prophages. Effective toxin production occurs only after prophage induction, and one may presume that replication of the phage genome is important for an increase in the dosage of stx genes, positively influencing their expression. We investigated the replication of plasmids derived from Shiga toxin (Stx)-converting bacteriophages in starved E. coli cells, as starvation conditions may be common in the intestine of infected humans. We found that, unlike plasmids derived from bacteriophage lambda, the Shiga toxin phage-derived replicons did not replicate in amino acid-starved relA+ and relA” cells (showing the stringent and relaxed responses to starvation, respectively). The presence of the stable fraction of the replication initiator O protein was detected in all tested replicons. However, while ppGpp, the stringent response effector, inhibited the activities of the l PR promoter and its homologues from Shiga toxin-converting bacteriophages, these promoters, except for lambda PR, were only weakly stimulated by the DksA protein. We suggest that this less efficient (relative to lambda) positive regulation of transcription responsible for transcriptional activation of the origin contributes to the inhibition of DNA replication initiation of Shiga toxin-converting bacteriophages in starved host cells, even in the absence of ppGpp (as in starved relA” hosts). Possible clinical implications of these results are discussed

The universal Banach space with a KK-suppression unconditional basis

Using the technique of Fra\"iss\'e theory, for every constant $K\ge 1$ we consruct a universal object in the class of Banach spaces with normalized $K$-suppression unconditional Schauder bases.Comment: 12 pages. arXiv admin note: substantial text overlap with arXiv:1801.1006

Disassembly of the Coliphage λ Replication Complex Due to Heat Shock Induction of thegroEOperon

AbstractWe have found previously that, in contrast to the free O initiator protein of λ phage or plasmid rapidly degraded by theEscherichia coliClpP/ClpX protease, the λO present in the replication complex (RC) is protected from proteolysis. In amino acid-starvedE. coli relAcells, a temperature shift from 30 to 43° did not affect RC integrity, as judged from the unchanged level of stable λO observed; however, the same temperature shift in a complete medium resulted in the decay of this λO fraction, which suggested disassembly of the RC. Examination of this phenomenon revealed that for λ RC disassembly, heat shock induction of thegroEoperon, coding for molecular chaperones of the Hsp60 class, is indispensable. Heat shock induction of thegroEoperon present on a multicopy plasmid inhibited the growth of infecting phage

Removal of Phenol from Wastewater Using Fenton-Like Reaction over Iron Oxide–Modified Silicates

Iron-containing active phase was deposited on natural layered silicate (vermiculite) using several techniques such as ion exchange, precipitation, and forced hydrolysis during hydrothermal digestion. Tuning of the synthesis conditions resulted in preparation of the catalysts with different loading of active phase and physicochemical properties. The composite materials were characterized with respect to their structure (X-ray diffraction), agglomeration state of Fe (diffuse reflectance UV-vis spectroscopy), and chemical composition. Catalytic tests were performed in semi-batch reactor under atmospheric pressure. Aqueous solution of phenol was used as a model industrial effluent, and hydrogen peroxide was added as an oxidant. Spectral techniques were used for identification of intermediate oxidation products. Spent catalysts were also characterized, and structural and chemical changes were determined, e.g., leaching degree of active phase

Mass balance at partial run of quartzite carbothermal reduction

Mass balance for the process of incomplete carbothermal reduction of SiO2 to SiC thermogravimetric studies was presented. Tests were performed for the molar ratio of C/SiO2 = 3 at a temperature of 1 500 °C under an argon flow in the range from 0,1 to 3,4 dm3/min. Mass balance includes the loss due to escape of SiO and the mass of reactants C and SiO2 due to stopping the reaction. The weight gain of Al2O3 crucible was found and also the formation of crust layer on the surface of the samples. The crucible weight gain and the weight of crust layer created were taken into account in mass balance

The influence of intensity of argon flow on the rate of mass loss in carbothermal reduction of quartzite to silicon carbide

The effect of argon flow intensity on mass loss rate in the carbothermic reduction of SiO2 to SiC was examined. The graphite and natural quartzite in a molar ratio of C/SiO2=3 were used. Samples were reduced for 6 hours at 1 500 °C. In the range of argon flow intensity from 0,1 to 3,4 dcm3/min, the high level of rate of mass loss of the sample and the 70 – 80 % of SiC formed in the residue of the sample were obtained

A novel method for screening the glutathione transferase inhibitors

<p>Abstract</p> <p>Background</p> <p>Glutathione transferases (GSTs) belong to the family of Phase II detoxification enzymes. GSTs catalyze the conjugation of glutathione to different endogenous and exogenous electrophilic compounds. Over-expression of GSTs was demonstrated in a number of different human cancer cells. It has been found that the resistance to many anticancer chemotherapeutics is directly correlated with the over-expression of GSTs. Therefore, it appears to be important to find new GST inhibitors to prevent the resistance of cells to anticancer drugs. In order to search for glutathione transferase (GST) inhibitors, a novel method was designed.</p> <p>Results</p> <p>Our results showed that two fragments of GST, named F1 peptide (G<b>YW</b>KIKG<b>L</b>V) and F2 peptide (KW<b>R</b>NK<b>K</b>FELGLEFP<b>N</b>L), can significantly inhibit the GST activity. When these two fragments were compared with several known potent GST inhibitors, the order of inhibition efficiency (measured in reactions with 2,4-dinitrochlorobenzene (CDNB) and glutathione as substrates) was determined as follows: tannic acid > cibacron blue > F2 peptide > hematin > F1 peptide > ethacrynic acid. Moreover, the F1 peptide appeared to be a noncompetitive inhibitor of the GST-catalyzed reaction, while the F2 peptide was determined as a competitive inhibitor of this reaction.</p> <p>Conclusion</p> <p>It appears that the F2 peptide can be used as a new potent specific GST inhibitor. It is proposed that the novel method, described in this report, might be useful for screening the inhibitors of not only GST but also other enzymes.</p

Small and Smaller—sRNAs and MicroRNAs in the Regulation of Toxin Gene Expression in Prokaryotic Cells: A Mini-Review

Non-coding small RNAs (sRNAs) have been identified in the wide range of bacteria (also pathogenic species) and found to play an important role in the regulation of many processes, including toxin gene expression. The best characterized prokaryotic sRNAs regulate gene expression by base pairing with mRNA targets and fall into two broad classes: cis-encoded sRNAs (also called antisense RNA) and trans-acting sRNAs. Molecules from the second class are frequently considered as the most related to eukaryotic microRNAs. Interestingly, typical microRNA-size RNA molecules have also been reported in prokaryotic cells, although they have received little attention up to now. In this work we have collected information about all three types of small prokaryotic RNAs in the context of the regulation of toxin gene expression

On the equivalence of different definitions of R-operation

Three well-known definitions of R-operation in the BPHZ formalism are presented. The equivalence between the Zimmermann’s forest formula and the factorized version of R-operation is proved