Mycobacterium tuberculosis lineage 4 comprises globally distributed and geographically restricted sublineages

Generalist and specialist species differ in the breadth of their ecological niches. Little is known about the niche width of obligate human pathogens. Here we analyzed a global collection of Mycobacterium tuberculosis lineage 4 clinical isolates, the most geographically widespread cause of human tuberculosis. We show that lineage 4 comprises globally distributed and geographically restricted sublineages, suggesting a distinction between generalists and specialists. Population genomic analyses showed that, whereas the majority of human T cell epitopes were conserved in all sublineages, the proportion of variable epitopes was higher in generalists. Our data further support a European origin for the most common generalist sublineage. Hence, the global success of lineage 4 reflects distinct strategies adopted by different sublineages and the influence of human migration.We thank S. Lecher, S. Li and J. Zallet for technical support. Calculations were performed at the sciCORE scientific computing core facility at the University of Basel. This work was supported by the Swiss National Science Foundation (grants 310030_166687 (S.G.) and 320030_153442 (M.E.) and Swiss HIV Cohort Study grant 740 to L.F.), the European Research Council (309540-EVODRTB to S.G.), TB-PAN-NET (FP7-223681 to S.N.), PathoNgenTrace projects (FP7-278864-2 to S.N.), SystemsX.ch (S.G.), the German Center for Infection Research (DZIF; S.N.), the Novartis Foundation (S.G.), the Natural Science Foundation of China (91631301 to Q.G.), and the National Institute of Allergy and Infectious Diseases (5U01-AI069924-05) of the US National Institutes of Health (M.E.)

Dried Culture Spots for Xpert MTB/RIF External Quality Assessment: Results of a Phase 1 Pilot Study in South Africa ▿

Implementation of Xpert MTB/RIF requires quality assessment. A pilot program using dried culture spots (DCSs) of inactivated Mycobacterium tuberculosis is described. Of 274 DCS results received, 2.19% generated errors; the remainder yielded 100% correct Mycobacterium tuberculosis detection. The probe A cycle threshold (CT) variability of three DCS batches was ≤3.47. The study of longer-term DCS stability is ongoing

Systematics of the neotropical fish subfamily Glandulocaudinae (Teleostei: Characiformes: Characidae)

The systematics of the Glandulocaudinae is reviewed in detail and justification for the recognition of the group as a subfamily is discussed. The subfamily Glandulocaudinae consists of three genera: Lophiobrycon with one species plesiomorphic in some anatomical features but some others exclusively derived relative to the species in the other genera; Glandulocauda with two species intermediate in phylogenetic derivation; and Mimagoniates with seven species (one new), all more phylogenetically derived concerning their pheromone producing caudal-fin organs and with other anatomical characters presumably more derived than in the species of the other genera. Glandulocauda melanogenys Eigenmann, 1911, is considered a junior synonym of Hyphessobrycon melanopleurus Ellis, 1911. A replacement name, Glandulocauda caerulea Menezes & Weitzman, is proposed for G. melanopleura Eigenmann, 1911. Gland cells found in the caudal-fin organs of all species are histologically indistinguishable from club cells and probably secrete a pheromone during courtship. The club cells are associated with somewhat modified to highly derived caudal scales forming a pheromone pumping organ in the more derived genera and species. This subfamily is distributed in freshwaters of eastern and southern Brazil, Paraguay, and northeastern Uruguay.A sistemática de Glandulocaudinae é revista e a justificativa para o reconhecimento do grupo como subfamília discutida. A subfamília Glandulocaudinae consiste de três gêneros: Lophiobrycon, com uma espécie plesiomórfica com relação a alguns caracteres anatômicos, mas outros derivados e exclusivos em relação às espécies dos outros dois gêneros; Glandulocauda, com duas espécies intermediárias quanto à condição dos caracteres derivados; e Mimagoniates, com sete espécies (uma nova), todas filogeneticamente mais avançadas quanto às características dos órgãos da nadadeira caudal produtores de feromônio e outras características anatômicas presumivelmente mais derivadas do que nas espécies dos outros gêneros. Glandulocauda melanogenys Eigenmann, 1911, é considerado sinônimo junior de Hyphessobrycon melanopleurus Ellis, 1911. O nome Glandulocauda caerulea Menezes & Weitzman, é proposto em substiutição para G. melanopleura Eigenmann, 1911. Células glandulares encontradas nos órgãos da caudal são histologicamente indistinguíveis de "células club" e provavelmente secretam algum tipo de feromônio durante a corte. As "células club" são associadas a escamas da caudal pouco ou inteiramente modificadas e fazendo parte dos órgãos bombeadores de feromônio nas espécies e gêneros mais derivados. Esta subfamília distribui-se em ambientes de água doce do leste e sul do Brasil, no Paraguai e nordeste do Uruguai.Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Smithsonian Institution - Division of Fishes, National Museum of Natural Histor