Genome sequence of foot-and-mouth disease virus serotype O lineage ind-2001d collected in vietnam in 2015

© 2017 Arzt et al. In 2015, foot-and-mouth disease (FMD) virus lineage Ind-2001 was detected for the first time in Southeast Asia. This report contains the first nearcomplete genome sequence of a viral isolate from this lineage collected from an outbreak in Vietnam. This novel incursion has substantial implications for regional FMD control measures

Anthropogenic impacts on the water chemistry of a transboundary river system in Southeast Asia

The Red River originating from Yunnan province, China is the second largest river in Vietnam in terms of length and discharge. Combination of water chemistry monitoring data of 4 years (2018–2022) from different sub-basins of the Red River (the Da, Lo, Thao, Tra Ly, and Day) with historical datasets indicates a decline in pH from 8.1 in 2000 to 7.7 in 2021, greater CO2 concentrations and a shift from waters naturally dominated by carbonate weathering to waters dominated by evaporite weathering. Such changes were most apparent in the delta area where heavy human activities have increased influxes of most dissolved chemicals, except SiO2. Evaporite weathering is particularly enhanced by mining and deforestation occurring in upstream regions of both China and Vietnam. Pyrite oxidation, alongside silicate weathering, is enhanced along the Red River Fault Zone but reduced in tributaries with a higher proportion of hydropower reservoirs. Longer water residence times in these large reservoirs (total volume > 2.7x1010 m3) located in the Da and Lo sub-basins have also increased primary productivity, leading to higher evasion/uptake of CO2 and SiO2, lower total dissolved solids (TDS), and higher pH. The total physical and chemical denudation rates of upstream mountain tributaries ranged between 0.107 \ub1 0.108 and 0.139 \ub1 0.137 mm yr−1, mainly due to reservoir implementation and instream aquatic biogeochemistry changes. Our findings demonstrate that anthropogenic activities are profound factors impacting the water chemistry of the Red River system

Phylodynamics of foot-and-mouth disease virus O/PanAsia in Vietnam 2010-2014

© 2017 The Author(s). Foot-and-mouth disease virus (FMDV) is endemic in Vietnam, a country that plays an important role in livestock trade within Southeast Asia. The large populations of FMDV-susceptible species in Vietnam are important components of food production and of the national livelihood. In this study, we investigated the phylogeny of FMDV O/PanAsia in Vietnam, reconstructing the virus' ancestral host species (pig, cattle or buffalo), clinical stage (subclinical carrier or clinically affected) and geographical location. Phylogenetic divergence time estimation and character state reconstruction analyses suggest that movement of viruses between species differ. While inferred transmissions from cattle to buffalo and pigs and from pigs to cattle are well supported, transmission from buffalo to other species, and from pigs to buffalo may be less frequent. Geographical movements of FMDV O/PanAsia virus appears to occur in all directions within the country, with the South Central Coast and the Northeast regions playing a more important role in FMDV O/PanAsia spread. Genetic selection of variants with changes at specific sites within FMDV VP1 coding region was different depending on host groups analyzed. The overall ratio of non-synonymous to synonymous nucleotide changes was greater in pigs compared to cattle and buffalo, whereas a higher number of individual amino acid sites under positive selection were detected in persistently infected, subclinical animals compared to viruses collected from clinically diseased animals. These results provide novel insights to understand FMDV evolution and its association with viral spread within endemic countries. These findings may support animal health organizations in their endeavor to design animal disease control strategies in response to outbreaks

Genome sequences of seven foot-andmouth disease virus isolates collected from serial samples from one persistently infected carrier cow in Vietnam

Several foot-and-mouth disease virus (FMDV) carrier cattle were identified in Vietnam by the recovery of infectious virus from oropharyngeal fluid. This report contains the first near-complete genome sequences of seven viruses from sequential samples from one carrier animal collected over the course of 1 year. The characterization of within-host viral evolution has implications for FMDV control strategies

Site-specific substitution (Q172R) in the VP1 protein of FMDV isolates collected from asymptomatic carrier ruminants in Vietnam

The epidemiological significance of asymptomatic persistent foot-and-mouth disease virus (FMDV) infection in carrier animals, specifically its ability to seed new clinical outbreaks, is undetermined, and consistent viral determinants of FMDV persistence have not been identified. We analyzed 114 FMDV O/ME-SA/PanAsia VP1 sequences from naturally infected animals in Vietnam, of which 31 were obtained from persistently infected carrier animals. A site-specific substitution was identified at VP1 residue 172 where arginine was present in all 31 of the carrier-associated viruses, whereas outbreak viruses typically contained glutamine. Additionally, we characterized multiple viruses from a single persistently infected animal that were collected over the course of eight months and at multiple distinct anatomic sites (larynx, dorsal soft palate and dorsal nasopharynx). This work sheds new light on naturally occurring viral mutations within the host and provides a basis for understanding the viral evolution and persistence mechanisms of FMDV