Root water compensation sustains transpiration rates in an Australian woodland

© 2014 Elsevier Ltd. We apply a model of root-water uptake to a woodland in Australia to examine the regulation of transpiration by root water compensation (i.e., the ability of roots to regulate root water uptake from different parts of the soil profile depending on local moisture availability). We model soil water movement using the Richards equation and water flow in the xylem with Darcy's equation. These two equations are coupled by a term that governs the exchange of water between soil and root xylem as a function of the difference in water potential between the two. The model is able to reproduce measured diurnal patterns of sap flux and results in leaf water potentials that are consistent with field observations. The model shows that root water compensation is a key process to allow for sustained rates of transpiration across several months. Scenarios with different root depths showed the importance of having a root system deeper than about 2. m to achieve the measured transpiration rates without reducing the leaf water potential to levels inconsistent with field measurements. The model suggests that the presence of more than 5% of the root system below 0.6. m allows trees to maintain sustained transpiration rates keeping leaf water potential levels within the range observed in the field. According to the model, a large contribution to transpiration in dry periods was provided by the roots below 0.3. m, even though the percentage of roots at these depths was less than 40% in all scenarios

Prevalence of HPV in Oesophageal Biopsies and its Correlation with Expression Of P16INK4A

Background: The association of Human papillomavirus (HPV ) and p16INK4a is well established with cervical malignancies and has been studied in oral mucosa also. Koilocytosis, that is considered to be a hallmark of HPV infection is also seen in oesophageal mucosa. Aims: This study was designed to determine the prevalence of HPV in biopsies from inflammatory and neoplastic lesions of oesophagus and correlate it with expression of p16INK4a. Materials and Methods: The study included 102 oesophageal biopsies. Haematoxylin & Eosin stained sections were examined for morphological details including koilocytosis. Immunohistochemistry for HPV and p16INK4a were done on 50 biopsies. HPV positivity was graded and scoring for p16INK4a was done. Results: Various grades of koilocytosis was noted in 68.75%, 94.73% and 72.91% controls, inflammatory and neoplastic lesions respectively. IHC for HPV was positive in 80% control, 75% inflammatory and 100% cases of neoplastic lesion. Complete score for p16INK4a was 0.60, 0.59 and 3.63 in control, inflammatory and neoplastic lesion. The difference in expression of p16INK4a between neoplastic and inflammatory lesion was statistically significant. Conclusion: Expression of p16INK4a protein showed good correlation with HPV infection in inflammatory and neoplastic lesions. Thus IHC for p16INK4a which is easily available can be used as an indirect evidence of HPV infection in neoplastic lesion where expensive molecular technique for HPV DNA measurement is not feasibl

Can reindeer husbandry management slow down the shrubification of the Arctic?

Rapid climate change is threatening the stability and functioning of Arctic ecosystems. As the Arctic warms, shrubs have been widely observed to expand, which has potentially serious consequences for global climate regulation and for the ecological processes characterising these ecosystems. However, it is currently unclear why this shrubification has been spatially uneven across the Arctic, with herbivory being suggested as a key regulating factor. By taking advantage of freely available satellite imagery spanning three decades, we mapped changes in shrub cover in the Yamal Peninsula and related these to changes in summer temperature and reindeer population size. We found no evidence that shrubs had expanded in the study site, despite increasing summer temperatures. At the same time, herbivore pressure increased significantly, with the local reindeer population size growing by about 75%. Altogether, our results thus point towards increases in large herbivore pressure having compensated for the warming of the Peninsula, halting the shrubification of the area. This suggests that strategic semi-domesticated reindeer husbandry, which is a common practice across the Eurasian Arctic, could represent an efficient environmental management strategy for maintaining open tundra landscapes in the face of rapid climate change

The COVID-19 Psychological Distress Scale (CPDS-16): development and initial validation

The outbreak of COVID-19 has caused psychological distress among the Indian population. There are several scales that assess fear and distress related to COVID-19 among individuals. However, these scales are context-specific and lack multi-cultural environment applicability in countries such as India. Therefore, the present study developed a psychometric instrument to assess psychological responses to COVID-19 among the Indian population. A total of 420 participants (60.5% females, Mage=25.89 years) were recruited online using a convenience sampling technique. The 16-item COVID-19 Psychological Distress Scale (CPDS-16) was developed based on the extensive review of the existing scales on psychological constructs related to COVID-19 (yielding four scales with a total of 37 items) and independent review by two external experts. Internal consistency and reliability of the scale was established by using corrected item-total correlations, Cronbach's alpha, and McDonald's omega. Factor structure of the scale was determined by using exploratory factor analysis (EFA). Convergent validity of the scale was established by correlating CPDS-16 scores with the three subscales of the Depression, Anxiety, and Stress Scale (DASS-21). Corrected item-total correlations (range = 0.43 to 0.70), Cronbach's alpha (α = 0.90), and McDonald's omega (ω = 0.89) provided evidence for very good internal consistency and reliability of the scale. EFA of the CPDS-16 demonstrated a two-factor structure identified as 'individual level distress' (10 items) and 'community level distress' (6 items). Convergent validity of the scale was established using the DASS-21 with statistically significant and positive correlations between CPDS-16 and the three DASS-21 subscales (i.e., depression, anxiety, and stress). The CPDS-16 is a reliable and valid instrument in assessing psychological distress caused due to COVID-19 with robust psychometric properties. The scale can be administered rapidly and is useful in screening psychological distress caused due to COVID-19

AA--Dependence of ΛΛ\Lambda\Lambda Bond Energies in Double---Λ\Lambda Hypernuclei

The $A$-dependence of the bond energy $\Delta B_{\Lambda\Lambda}$ of the ${\Lambda\Lambda}$ hypernuclear ground states is calculated in a three-body ${\Lambda + \Lambda + {^{A}Z}}$ model and in the Skyrme-Hartree-Fock approach. Various ${\Lambda\Lambda}$ and $\Lambda$-nucleus or ${\Lambda N}$ potentials are used and the sensitivity of $\Delta B_{\Lambda\Lambda}$ to the interactions is discussed. It is shown that in medium and heavy ${\Lambda\Lambda}$ hypernuclei, $\Delta B_{\Lambda\Lambda}$ is a linear function of $r_{\Lambda}^{-3}$, where $r_\Lambda$ is rms radius of the hyperon orbital. It looks unlikely that it will be possible to extract ${\Lambda\Lambda}$ interaction from the double-$\Lambda$ hypernuclear energies only, the additional information about the $\Lambda$-core interaction, in particular, on $r_{\Lambda}$ is needed.Comment: 11 pages, LaTex, 3 figure

Single Molecule Analysis of Replicated DNA Reveals the Usage of Multiple KSHV Genome Regions for Latent Replication

Kaposi's sarcoma associated herpesvirus (KSHV), an etiologic agent of Kaposi's sarcoma, Body Cavity Based Lymphoma and Multicentric Castleman's Disease, establishes lifelong latency in infected cells. The KSHV genome tethers to the host chromosome with the help of a latency associated nuclear antigen (LANA). Additionally, LANA supports replication of the latent origins within the terminal repeats by recruiting cellular factors. Our previous studies identified and characterized another latent origin, which supported the replication of plasmids ex-vivo without LANA expression in trans. Therefore identification of an additional origin site prompted us to analyze the entire KSHV genome for replication initiation sites using single molecule analysis of replicated DNA (SMARD). Our results showed that replication of DNA can initiate throughout the KSHV genome and the usage of these regions is not conserved in two different KSHV strains investigated. SMARD also showed that the utilization of multiple replication initiation sites occurs across large regions of the genome rather than a specified sequence. The replication origin of the terminal repeats showed only a slight preference for their usage indicating that LANA dependent origin at the terminal repeats (TR) plays only a limited role in genome duplication. Furthermore, we performed chromatin immunoprecipitation for ORC2 and MCM3, which are part of the pre-replication initiation complex to determine the genomic sites where these proteins accumulate, to provide further characterization of potential replication initiation sites on the KSHV genome. The ChIP data confirmed accumulation of these pre-RC proteins at multiple genomic sites in a cell cycle dependent manner. Our data also show that both the frequency and the sites of replication initiation vary within the two KSHV genomes studied here, suggesting that initiation of replication is likely to be affected by the genomic context rather than the DNA sequences

Discriminative Localized Sparse Representations for Breast Cancer Screening

Breast cancer is the most common cancer among women both in developed and developing countries. Early detection and diagnosis of breast cancer may reduce its mortality and improve the quality of life. Computer-aided detection (CADx) and computer-aided diagnosis (CAD) techniques have shown promise for reducing the burden of human expert reading and improve the accuracy and reproducibility of results. Sparse analysis techniques have produced relevant results for representing and recognizing imaging patterns. In this work we propose a method for Label Consistent Spatially Localized Ensemble Sparse Analysis (LC-SLESA). In this work we apply dictionary learning to our block based sparse analysis method to classify breast lesions as benign or malignant. The performance of our method in conjunction with LC-KSVD dictionary learning is evaluated using 10-, 20-, and 30-fold cross validation on the MIAS dataset. Our results indicate that the proposed sparse analyses may be a useful component for breast cancer screening applications

Subanesthetic ketamine treatment promotes abnormal interactions between neural subsystems and alters the properties of functional brain networks

Acute treatment with subanesthetic ketamine, a non-competitive N-methyl-D-aspartic acid (NMDA) receptor antagonist, is widely utilized as a translational model for schizophrenia. However, how acute NMDA receptor blockade impacts on brain functioning at a systems level, to elicit translationally relevant symptomatology and behavioral deficits, has not yet been determined. Here, for the first time, we apply established and recently validated topological measures from network science to brain imaging data gained from ketamine-treated mice to elucidate how acute NMDA receptor blockade impacts on the properties of functional brain networks. We show that the effects of acute ketamine treatment on the global properties of these networks are divergent from those widely reported in schizophrenia. Where acute NMDA receptor blockade promotes hyperconnectivity in functional brain networks, pronounced dysconnectivity is found in schizophrenia. We also show that acute ketamine treatment increases the connectivity and importance of prefrontal and thalamic brain regions in brain networks, a finding also divergent to alterations seen in schizophrenia. In addition, we characterize how ketamine impacts on bipartite functional interactions between neural subsystems. A key feature includes the enhancement of prefrontal cortex (PFC)-neuromodulatory subsystem connectivity in ketamine-treated animals, a finding consistent with the known effects of ketamine on PFC neurotransmitter levels. Overall, our data suggest that, at a systems level, acute ketamine-induced alterations in brain network connectivity do not parallel those seen in chronic schizophrenia. Hence, the mechanisms through which acute ketamine treatment induces translationally relevant symptomatology may differ from those in chronic schizophrenia. Future effort should therefore be dedicated to resolve the conflicting observations between this putative translational model and schizophrenia

Efficacy of different treatment regimes against setariosis (Setaria tundra, Nematoda: Filarioidea) and associated peritonitis in reindeer

<p>Abstract</p> <p>Background</p> <p>When a severe peritonitis outbreak in semi-domesticated reindeer was noticed in 2003 in Finland, the concerned industry urged immediate preventive actions in order to avoid detrimental effects of <it>S. tundra </it>and further economical losses. A research programme was swiftly initiated to study <it>S. tundra </it>and its impact on the health and wellbeing of reindeer.</p> <p>Methods</p> <p>The ultimate aim of this study was to test the efficacy of different treatment regimes against <it>S. tundra </it>and associated peritonitis in reindeer. The timing of the trials was planned to be compatible with the annual rhythm of the reindeer management; (1) the treatment of calves in midsummer, during routine calf ear marking, with ivermectin injection prophylaxis and deltamethrin pour-on solution as a repellent against insect vectors, (2) the treatment of infected calves in early autumn with ivermectin injection, and (3) ivermectin treatment of breeding reindeer in winter. The results were assessed using the post mortem inspection data and <it>S. tundra </it>detection. Finally, to evaluate on the population level the influence of the annual (late autumn-winter) ivermectin treatment of breeding reindeer on the transmission dynamics of <it>S. tundra</it>, a questionnaire survey was conducted.</p> <p>Results</p> <p>In autumn, ivermectin treatment was efficient against peritonitis and in midsummer had a slight negative impact on the degree of peritonitis and positive on the fat layer, but deltamethrin had none. Ivermectin was efficient against adult <it>S. tundra </it>and its smf. All the reindeer herding cooperatives answered the questionnaire and it appeared that antiparasitic treatment of reindeer population was intense during the study period, when 64–90% of the animals were treated. In the southern part of the Finnish reindeer husbandry area, oral administration of ivermectin was commonly used.</p> <p>Conclusion</p> <p>Autumn, and to a lesser degree summer, treatment of reindeer calves with injectable ivermectin resulted in decreased severity of peritonitis and perihepatitis in reindeer calves due to setariosis. In the case of necessity for animal welfare reasons, treatment during early autumn round ups should be considered. On the population level, massive and routinely applied antiparasitic treatments can improve the health of breeding reindeer and decrease the mortality and the number of carriers but during the outbreak could not prevent its movement and expansion to the North.</p