Fermions in non-relativistic AdS/CFT correspondence

We extend the non-relativistic AdS/CFT correspondence to the fermionic fields. In particular we study the two point function of a fermionic operator in non-relativistic CFTs by making use of a massive fermion propagating in geometries with Schrodinger group isometry. Although the boundary of the geometries with Schrodinger group isometry differ from that in AdS geometries where the dictionary of AdS/CFT is established, using the general procedure of AdS/CFT correspondence, we see that the resultant two point function has the expected form for fermionic operators in non-relativistic CFTs, though a non-trivial regularization may be needed.Comment: 12 pages,Latex file; V2: typos corrected, refs adde

Early cretaceous plume–ridge interaction recorded in the band-e-zeyarat ophiolite (North Makran, Iran): New constraints from petrological, mineral chemistry, and geochronological data

The North Makran domain (southeast Iran) is part of the Makran accretionary wedge and consists of an imbricate stack of continental and Neo-Tethyan oceanic tectonic units. Among these, the Band-e-Zeyarat ophiolite consists of (from bottom to top): ultramafic cumulates, layered gabbros, isotropic gabbros, a sheeted dyke complex, and a volcanic sequence. Sheeted dykes and volcanic rocks are mainly represented by basalts and minor andesites and rhyolites showing either normal-type (N) or enriched-type (E) mid-ocean ridge basalt affinities (MORB). These conclusions are also supported by mineral chemistry data. In addition, E-MORBs can be subdivided in distinct subtypes based on slightly different but significant light rare earth elements, Th, Nb, TiO2, and Ta contents. These chemical differences point out for different partial melting conditions of their mantle sources, in terms of source composition, partial melting degrees, and melting depths. U-Pb geochronological data on zircons from intrusive rocks gave ages ranging from 122 to 129 Ma. We suggest that the Band-e-Zeyarat ophiolite represents an Early Cretaceous chemical composite oceanic crust formed in a mid-ocean ridge setting by partial melting of a depleted suboceanic mantle variably metasomatized by plume-type components. This ophiolite records, therefore, an Early Cretaceous plume–ridge interaction in the Makran Neo-Tethys

Lowest Order Constrained Variational calculation for Polarized Liquid 3He at Finite Temperature

We have investigated some of the thermodynamic properties of spin polarized liquid $^3\mathrm{He}$ at finite temperature using the lowest order constrained variational method. For this system, the free energy, entropy and pressure are calculated for different values of the density, temperature and polarization. We have also presented the dependence of specific heat, saturation density and incompressibility on the temperature and polarization.Comment: 17 pages, 7 figures. Int. J. Mod. Phys. B 27 (2008) in pres

Novel Telomere-Anchored PCR Approach for Studying Sexual Stage Telomeres in Aspergillus nidulans

Telomere length varies between germline and somatic cells of the same organism, leading to the hypothesis that telomeres are lengthened during meiosis. However, little is known about the meiotic telomere length in many organisms. In the filamentous fungus Aspergillus nidulans, the telomere lengths in hyphae and asexual spores are invariant. No study using existing techniques has determined the telomere length of the sexual ascospores due to the relatively low abundance of pure meiotic cells in A. nidulans and the small quantity of DNA present. To address this, we developed a simple and sensitive PCR strategy to measure the telomere length of A. nidulans meiotic cells. This novel technique, termed telomere-anchored PCR, measures the length of the telomere on chromosome II-L using a small fraction of the DNA required for the traditional terminal restriction fragment (TRF) Southern analysis. Using this approach, we determined that the A. nidulans ascospore telomere length is virtually identical to telomeres of other cell types from this organism, approximately 110 bp, indicating that a surprisingly strict telomere length regulation exists in the major cell types of A. nidulans. When the hyphal telomeres were measured in a telomerase reverse transcriptase (TERT) knockout strain, small decreases in length were readily detected. Thus, this technique can detect telomeres in relatively rare cell types and is particularly sensitive in measuring exceptionally short telomeres. This rapid and inexpensive telomere-anchored PCR method potentially can be utilized in other filamentous fungi and types of organisms

Chemical chaperone treatment reduces intracellular accumulation of mutant collagen IV and ameliorates the cellular phenotype of a COL4A2 mutation that causes haemorrhagic stroke

Haemorrhagic stroke accounts for approximately 20% of stroke cases and porencephaly is a clinical consequence of perinatal cerebral haemorrhaging. Here we report the identification of a novel dominant G702D mutation in the collagen domain of COL4A2 (collagen IV alpha chain 2) in a family displaying porencephaly with reduced penetrance. COL4A2 is the obligatory protein partner of COL4A1 but in contrast to most COL4A1 mutations, the COL4A2 mutation does not lead to eye or kidney disease. Analysis of dermal biopsies from patient and his unaffected father, who also carries the mutation, revealed that both display basement membrane (BM) defects. Intriguingly, defective collagen IV incorporation into the dermal BM was only observed in the patient and was associated with endoplasmic reticulum (ER) retention of COL4A2 in primary dermal fibroblasts. This intracellular accumulation led to ER-stress, unfolded protein response activation, reduced cell proliferation and increased apoptosis. Interestingly, absence of ER retention of COL4A2 and ER-stress in cells from the unaffected father indicate that accumulation and/or clearance of mutant COL4A2 from the ER may be a critical modifier for disease development. Our analysis also revealed that mutant collagen IV is degraded via the proteasome. Importantly, treatment of patient cells with a chemical chaperone decreased intracellular COL4A2, ER-stress and apoptosis, demonstrating that reducing intracellular collagen accumulation can ameliorate the cellular phenotype of COL4A2 mutations. Importantly, these data highlight that manipulation of chaperone levels, intracellular collagen accumulation and ER-stress are potential therapeutic options for collagen IV diseases including haemorrhagic stroke

Targeted genomic analysis reveals widespread autoimmune disease association with regulatory variants in the TNF superfamily cytokine signalling network.

BACKGROUND: Tumour necrosis factor (TNF) superfamily cytokines and their receptors regulate diverse immune system functions through a common set of signalling pathways. Genetic variants in and expression of individual TNF superfamily cytokines, receptors and signalling proteins have been associated with autoimmune and inflammatory diseases, but their interconnected biology has been largely unexplored. METHODS: We took a hypothesis-driven approach using available genome-wide datasets to identify genetic variants regulating gene expression in the TNF superfamily cytokine signalling network and the association of these variants with autoimmune and autoinflammatory disease. Using paired gene expression and genetic data, we identified genetic variants associated with gene expression, expression quantitative trait loci (eQTLs), in four peripheral blood cell subsets. We then examined whether eQTLs were dependent on gene expression level or the presence of active enhancer chromatin marks. Using these eQTLs as genetic markers of the TNF superfamily signalling network, we performed targeted gene set association analysis in eight autoimmune and autoinflammatory disease genome-wide association studies. RESULTS: Comparison of TNF superfamily network gene expression and regulatory variants across four leucocyte subsets revealed patterns that differed between cell types. eQTLs for genes in this network were not dependent on absolute gene expression levels and were not enriched for chromatin marks of active enhancers. By examining autoimmune disease risk variants among our eQTLs, we found that risk alleles can be associated with either increased or decreased expression of co-stimulatory TNF superfamily cytokines, receptors or downstream signalling molecules. Gene set disease association analysis revealed that eQTLs for genes in the TNF superfamily pathway were associated with six of the eight autoimmune and autoinflammatory diseases examined, demonstrating associations beyond single genome-wide significant hits. CONCLUSIONS: This systematic analysis of the influence of regulatory genetic variants in the TNF superfamily network reveals widespread and diverse roles for these cytokines in susceptibility to a number of immune-mediated diseases.The Intramural Research Program of the National Institute of Arthritis and Musculoskeletal and Skin Diseases and the National Library of Medicine of the US National Institutes of Health (Intramural Research Program) , Wellcome Trust (080327/Z/06/Z, 087007/Z/08/Z, 094227/Z/10/Z, Clinical PhD Programme, 079895, 076113 and 085475) , Medical Research Council (G0400929) , National Institute for Health Research , National Institutes of Health (Oxford-Cambridge Scholars Program) , Istanbul University Research Fund and UK Behcet’s Syndrome Society.This is the final version of the article. It first appeared from BioMed Central via http://dx.doi.org/10.1186/s13073-016-0329-

Non-relativistic CFT and Semi-classical Strings

We study different features of 3D non-relativistic CFT using gravity description. As the corresponding gravity solution can be embedded into the type IIB string theory, we study semi-classical closed/open strings in this background. In particular we consider folded rotating and circular pulsating closed strings where we find the anomalous dimension of the dual operators as a function of their quantum numbers. We also consider moving open strings in this background which can be used to compute the drag force. In particular we find that for slowly moving particles, the energy is lost exponentially and the characteristic time is given in terms of the temperature, while for fast moving particles the energy loss goes as inverse of the time and the characteristic time is independent of the temperature.Comment: 20 pages, Latex file; V2: typos corrected, ref. adde