Compton-thick AGN in the NuSTAR era II: A deep NuSTAR and XMM-Newton view of the candidate Compton thick AGN in NGC 1358

We present the combined NuSTATR and XMM-Newton 0.6-79 keV spectral analysis of a Seyfert 2 galaxy, NGC 1358, which we selected as a candidate Compton thick (CT-) active galactic nucleus (AGN) on the basis of previous Swift/BAT and Chandra studies. According to our analysis, NGC 1358 is confirmed to be a CT-AGN using physical motivated models, at >3 $\sigma$ confidence level. Our best-fit shows that the column density along the 'line-of-sight' of the obscuring material surrounding the accreting super-massive black hole is N$\rm _H$ = [1.96--2.80] $\times$ 10$^{24}$ cm$^{-2}$. The high-quality data from NuSTAR gives the best constraints on the spectral shape above $\sim$10 keV to date on NGC 1358. Moreover, by combining NuSTAR and XMM-Newton data, we find that the obscuring torus has a low covering factor ($f_c$ <0.17), and the obscuring material is distributed in clumps, rather than uniformly. We also derive an estimate of NGC 1358's Eddington ratio, finding it to be $\lambda_{\rm Edd}$ $\sim$$4.7_{-0.3}^{+0.3}$ $\times$ 10$^{-2}$, which is in acceptable agreement with previous measurements. Finally, we find no evidence of short-term variability, over a $\sim$100 ks time-span, in terms of both 'line-of-sight' column density and flux.Comment: 12 pages, 6 figure

Biology of the microbiome 2: metabolic role

The human microbiome is a new frontier in biology and one that is helping to define what it is to be human. Recently, we have begun to understand that the "communication" between the host and its microbiome is via a metabolic superhighway. By interrogating and understanding the molecules involved we may start to know who the main players are, and how we can modulate them and the mechanisms of health and disease.</p

Comparative metagenomic analysis of plasmid encoded functions in the human gut microbiome

Background: Little is known regarding the pool of mobile genetic elements associated with the human gut microbiome. In this study we employed the culture independent TRACA system to isolate novel plasmids from the human gut microbiota, and a comparative metagenomic analysis to investigate the distribution and relative abundance of functions encoded by these plasmids in the human gut microbiome. Results: Novel plasmids were acquired from the human gut microbiome, and homologous nucleotide sequences with high identity (>90%) to two plasmids (pTRACA10 and pTRACA22) were identified in the multiple human gut microbiomes analysed here. However, no homologous nucleotide sequences to these plasmids were identified in the murine gut or environmental metagenomes. Functions encoded by the plasmids pTRACA10 and pTRACA22 were found to be more prevalent in the human gut microbiome when compared to microbial communities from other environments. Among the most prevalent functions identified was a putative RelBE toxin-antitoxin (TA) addiction module, and subsequent analysis revealed that this was most closely related to putative TA modules from gut associated bacteria belonging to the Firmicutes. A broad phylogenetic distribution of RelE toxin genes was observed in gut associated bacterial species (Firmicutes, Bacteroidetes, Actinobacteria and Proteobacteria), but no RelE homologues were identified in gut associated archaeal species. We also provide indirect evidence for the horizontal transfer of these genes between bacterial species belonging to disparate phylogenetic divisions, namely Gram negative Proteobacteria and Gram positive species from the Firmicutes division. Conclusions: The application of a culture independent system to capture novel plasmids from the human gut mobile metagenome, coupled with subsequent comparative metagenomic analysis, highlighted the unexpected prevalence of plasmid encoded functions in the gut microbial ecosystem. In particular the increased relative abundance and broad phylogenetic distribution was identified for a putative RelBE toxin/antitoxin addiction module, a putative phosphohydrolase/phosphoesterase, and an ORF of unknown function. Our analysis also indicates that some plasmids or plasmid families are present in the gut microbiomes of geographically isolated human hosts with a broad global distribution (America, Japan and Europe), and are potentially unique to the human gut microbiome. Further investigation of the plasmid population associated with the human gut is likely to provide important insights into the development, functioning and evolution of the human gut microbiota

Irreducibility of the moduli space of orthogonal instanton bundles on Pn

In order to obtain existence criteria for orthogonal instanton bundles on $\mathbb{P}^n$, we provide a bijection between equivalence classes of orthogonal instanton bundles with no global sections and symmetric forms. Using such correspondence we are able to provide explicit examples of orthogonal instanton bundles with no global sections on $\mathbb{P}^n$ and prove that every orthogonal instanton bundle with no global sections on $\mathbb{P}^n$ and charge $c \geq 2$ has rank $r \leq(n-1) c$. We also prove that when the rank $r$ of the bundles reaches the upper bound, $\mathcal{M}_{\mathbb{P}}^{\mathcal{O}}(c, r)$, the coarse moduli space of orthogonal instanton bundles with no global sections on $\mathbb{P}^n$, with charge $c \geq 2$ and rank $r$, is affine, smooth, reduced and irreducible. Last, we construct Kronecker modules to determine the splitting type of the bundles in $\mathcal{M}_{\mathbb{P} n}^{\mathcal{O}}(c, r)$, whenever is non-empty