Simplified method of calorimetric measurements of background loss in crystals

We report on the measurements of absorption coefficient of the synthetic diamond crystal using an adapted form of laser calorimetry technique at wavelengths of 1064, 640, 532, 452 and 364 nm. The absorption coefficient was found to increase exponentially from 0,03 cm-1 at 1064 nm to 0,7 cm-1 at 364 nm

Screening of Phlebiopsis gigantea (fr.) Jülich strains according to their colonization ability on pine stumps after fellings

Biological method, consisted in stump treatment with preparations on the basis of antagonistic fungus Phlebiopsis gigantea (Fr.) J?lich has a wide application in the complex of protective measures, restricting harmfulness of Heterobasidion spp. Efficacy of pine stump wood colonization with seven strains of P. gigantea, screened during laboratory experiments, was investigated for selection of effective belarusian strains of antagonist. According to conducted experiments two strains that have the best colonization ability in forming fruiting bodies on 76.0–92.6% treated stumps in six months were selected. These strains can underline development of native biological preparation

Optically-pumped saturable absorber for fast switching between continuous-wave and passively mode-locked regimes of a Nd:YVO4 laser

We report on the fast (~50 μs) remote-controlled switching between continuous-wave (cw), cw mode-locked (ML) and Q-switched ML modes of operation of a Nd:YVO4 laser using an optically-pumped saturable absorber (SA). Pulses as short as 40 ps with an average output power of 0.5 W are obtained in cw ML regime

Anisotropy of the photo-elastic effect in Nd : KGd(WO4) 2 laser crystals

The anisotropy of thermal lensing and the photo-elastic effect is characterized for diodepumped Nd : KGd(WO4)2 crystals cut along the Np and Ng optical indicatrix axes and along its optical axis, O = Ng + 43°, at a laser wavelength of 1067 nm. Distortions in the spatial profile of the output laser beam are analyzed. The thermal lens is astigmatic; the orientation of its principal meridional planes, A and B, is determined by the anisotropy of photo-elastic effect. The thermal lens has opposite signs for rays lying in the principal meridional planes for Np- and O-cut crystals; it is positive for an Ng-cut crystal. The increase of thermal lens optical power after absorption of 1 W of pump power, i.e. the thermal lens sensitivity factors MA(B), and astigmatism degree S = |MA–MB| are determined. The photo-elastic effect was found to increase the optical power of the thermal lens and was significant for all studied crystal orientations

The prospects for Yb- and Nd-doped tungstate microchip lasers

Potassium gadolinium and yttrium tungstates doped with trivalent Nd, Yb or Tm ions are widely used crystals for efficient diode-pumped lasers. They are usually oriented along the b crystallographic axis, which is also the N p axis of optical indicatrix. The Np-cut is characterized by a strong thermal lens with opposing signs along Nm and N g [1]. This is unsuited to microchip lasers which require a positive thermal lens for a stable cavity. Therefore, a detailed investigation of thermo-optic effects and microchip laser potential of other crystallographic orientations in tungstate crystals is of interest

THPP target assignment reveals EchA6 as an essential fatty acid shuttle in mycobacteria

Phenotypic screens for bactericidal compounds against drug-resistant tuberculosis are beginning to yield novel inhibitors. However, reliable target identification remains challenging. Here, we show that tetrahydropyrazo[1,5-a]pyrimidine-3-carboxamide (THPP) selectively pulls down EchA6 in a stereospecific manner, instead of the previously assigned target Mycobacterium tuberculosis MmpL3. While homologous to mammalian enoyl-coenzyme A (CoA) hydratases, EchA6 is non-catalytic yet essential and binds long-chain acyl-CoAs. THPP inhibitors compete with CoA-binding, suppress mycolic acid synthesis, and are bactericidal in a mouse model of chronic tuberculosis infection. A point mutation, W133A, abrogated THPP-binding and increased both the in vitro minimum inhibitory concentration and the in vivo effective dose 99 in mice. Surprisingly, EchA6 interacts with selected enzymes of fatty acid synthase II (FAS-II) in bacterial two-hybrid assays, suggesting essentiality may be linked to feeding long-chain fatty acids to FAS-II. Finally, our data show that spontaneous resistance-conferring mutations can potentially obscure the actual target or alternative targets of small molecule inhibitors

Laser-related spectroscopic parameters of NV colour centres in diamond

One of the most common impurities in synthetic diamond is single substitutional nitrogen, which is incorporated in the diamond lattice substituting a carbon atom [1]. If the nitrogen is adjacent to a vacancy in the diamond lattice, it forms the nitrogen-vacancy (NV) colour centre (CC) [1]. The negatively charged state of this CC, NV-, is particularly well studied since its quantum properties are suitable for applications such as quantum information processing, single-photon sources and optical magnetometry [2]. NV CCs in the neutral state (NV0) are less widely studied. This CC exhibits broadband luminescence at slightly shorter wavelengths than NV-, and hence is also potentially of interest for tuneable and ultrafast visible laser applications. In this report, we present a detailed study of the laser-related spectroscopic properties of a diamond containing NV0 and NV- CCs

Targeted online liquid chromatography electron capture dissociation mass spectrometry for the localization of sites of in vivo phosphorylation in human Sprouty2

We demonstrate a strategy employing collision-induced dissociation for phosphopeptide discovery, followed by targeted electron capture dissociation (ECD) for site localization. The high mass accuracy and low background noise of the ECD mass spectra allow facile sequencing of coeluting isobaric phosphopeptides, with up to two isobaric phosphopeptides sequenced from a single mass spectrum. In contrast to the previously described neutral loss of dependent ECD method, targeted ECD allows analysis of both phosphotyrosine peptides and lower abundance phosphopeptides. The approach was applied to phosphorylation analysis of human Sprouty2, a regulator of receptor tyrosine kinase signaling. Fifteen sites of phosphorylation were identified, 11 of which are novel

Electron Capture Dissociation Mass Spectrometry of Tyrosine Nitrated Peptides

In vivo protein nitration is associated with many disease conditions that involve oxidative stress and inflammatory response. The modification involves addition of a nitro group at the position ortho to the phenol group of tyrosine to give 3-nitrotyrosine. To understand the mechanisms and consequences of protein nitration, it is necessary to develop methods for identification of nitrotyrosine-containing proteins and localization of the sites of modification.Here, we have investigated the electron capture dissociation (ECD) and collision-induced association (CID) behavior of 3-nitrotyrosine-containing peptides. The presence of nitration did not affect the CID behavior of the peptides. For the doubly-charged peptides, addition of nitration severely inhibited the production of ECD sequence fragments. However, ECD of the triply-charged nitrated peptides resulted in some singly-charged sequence fragments. ECD of the nitrated peptides is characterized by multiple losses of small neutral species including hydroxyl radicals, water and ammonia. The origin of the neutral losses has been investigated by use of activated ion (AI) ECD. Loss of ammonia appears to be the result of non-covalent interactions between the nitro group and protonated lysine side-chains

Activated Ion Electron Capture Dissociation (AI ECD) of proteins: synchronization of infrared and electron irradiation with ion magnetron motion.

Here, we show that to perform activated ion electron capture dissociation (AI-ECD) in a Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometer equipped with a CO(2) laser, it is necessary to synchronize both infrared irradiation and electron capture dissociation with ion magnetron motion. This requirement is essential for instruments in which the infrared laser is angled off-axis, such as the Thermo Finnigan LTQ FT. Generally, the electron irradiation time required for proteins is much shorter (ms) than that required for peptides (tens of ms), and the modulation of ECD, AI ECD, and infrared multiphoton dissociation (IRMPD) with ion magnetron motion is more pronounced. We have optimized AI ECD for ubiquitin, cytochrome c, and myoglobin; however the results can be extended to other proteins. We demonstrate that pre-ECD and post-ECD activation are physically different and display different kinetics. We also demonstrate how, by use of appropriate AI ECD time sequences and normalization, the kinetics of protein gas-phase refolding can be deconvoluted from the diffusion of the ion cloud and measured on the time scale longer than the period of ion magnetron motion