Diversity Analysis of the Immunoglobulin M Heavy Chain Gene in Nile Tilapia, Oreochromis niloticus (Linnaeus)

A full-length cDNA encoding the immunoglobulin (IgM) heavy chain gene of Nile tilapia was successfully cloned using the 5’ and 3’ RACE techniques. The complete cDNA of the Nile tilapia IgM heavy chain gene is 1,921 bp in length and has an open reading frame (ORF) of 1,740 bp, which corresponds to 580 amino acid residues. The deduced amino acid sequence of the Nile tilapia IgM heavy chain includes a typical secretory IgM heavy chain designated "On-sIgM" and a variable region that is connected to 4 constant regions to form the LH-VH-Cµ1-Cµ2-Cµ3-Cµ4 pattern. Comparisons of the nucleotide and amino acid sequences of On-sIgM with IgM heavy chains of other organisms showed the highest similarity scores of 62.6 and 55.4%, respectively, to the orange-spotted grouper (Epinephelus coioides). Structural analysis of 126 cDNAs encoding variable domains of the IgM heavy chain revealed that at least 9 VH families, 6 DH segments and 4 JH families were utilized using several mechanisms to generate the repertoire of antigen-binding domains. Variation analysis of the variable domains indicated that the amino acid sequences of the framework regions (FRs) were less variable than those of the complementarity determining regions (CDRs), among which the most variable was CDR3. Tissue expression profile analysis using quantitative real-time RT-PCR of healthy Nile tilapia showed that the IgM heavy chain gene was ubiquitously expressed in all 13 tested tissues, but the highest expression level was observed in the head kidney, followed by the spleen, intestine and peripheral blood leukocytes (PBLs). Furthermore, Southern blot analysis of the constant region of the IgM heavy chain gene of 3 different fishes indicated that Nile tilapia genomes may contain 2 copies of the IgM gene.Keywords: Nile Tilapia, IgM Heavy Chain, Variable Region, Diversity, Secreted Form, Southern Blo

An oral delivery system for controlling white spot syndrome virus infection in shrimp using transgenic microalgae

White spot disease (WSD) is a longstanding and serious viral disease of various shrimp species that has caused high mortality rates for many decades. Currently, there is no practical method to control this disease. Therefore, we have explored the development of a novel vaccine-based method to control this disease using transgenic algae. During infection by white spot syndrome virus (WSSV), the interaction between viral envelope proteins and cell surface protein receptors on target cells is the key step of viral entry and replication. Hence, transgenic lines of the green microalga Chlamydomonas reinhardtii harbouring a WSSV VP28 viral envelope protein were created as an oral delivery system for vaccinating shrimp. Two separate transplastomic lines containing wild-type and codon optimized gene sequences for VP28 were evaluated for recombinant protein levels. Only the codon optimized line gave rise to detectable VP28 in western blot analysis, which demonstrated that optimization for chloroplast codon bias improved the efficiency of expression and that the gene design produced a favourable RNA secondary structure with suitable free energy for translation. In addition, bile salt and acid tolerance tests demonstrated that this transgenic Chlamydomonas can tolerate mildly acidic (pH 5.0) conditions and 0.30% bile salts. These features indicated that algal cells are suitable for delivering viral antigens through a shrimp's digestive system. In WSSV infection experiments, the highest survival rate (87%) was recorded in shrimps fed with the codon optimized VP28 line mixed into their feed, indicating that this line could be employed in the control of WSSV spread in shrimp populations. This algal strategy offers a new, efficient, fast and less labour-intensive method for the control of other diseases in aquatic animals through oral delivery

Full Length Research Paper Identification of species (meat and blood samples) using nested-PCR analysis of mitochondrial DNA

Crocodile meat product is an alternative protein source. Although, crocodile meat is more expensive, its taste is similar to that of chicken and fish. The authentication of commercial meat species is important for consumer’s confidence. In this study, sensitive and specific method multiplex nested-PCR was applied to identify commercial meat species. Dried blood was used as an alternative DNA source for detection. The detection sensitivity was enhanced by primers specifically designed to encompass the mitochondrial Cytochrome b and NADH dehydrogenase 5/6 genes. The specificity and sensitivity of multiplex PCR system were tested. Different lengths of specific nested-PCR products were detected to be 350, 570, 750 and 1000 bp for chicken, pig, cow, and crocodile, respectively. The system allowed detection with as little as 5 nanogram of DNA from either meat or blood sample. Detection sensitivity of individual species was improved, enabling the detection of DNA with as little as 1 picogram. Cross reaction was not detected among the tested species. It was shown that the multiplex-PCR assay enhanced the sensitivity of routine species identification and allowed the use of blood as an alternative DNA source for detection.Key words: Cytochrome b, NADH dehydrogenase, mitochondrial DNA, meat, blood, species identification, nested-PCR, crocodile

Potential authentication of various meat-based products using simple and efficient DNA extraction method

Background: The growth of halal food consumption worldwide has resulted in an increase in the request for halal authentication. DNA-based detection using powerful real-time polymerase chain reaction (PCR) technique has been shown to be highly specific and sensitive authentication tool. The efficient DNA extraction method in terms of quality and quantity is a backbone step to obtain successful real-time PCR assays. In this study, different DNA extraction methods using three lysis buffers were evaluated and developed to recommend a much more efficient method as well as achieve a successful detection using real-time PCR. Results: The lysis buffer 2 (LB2) has been shown to be the best lysis buffer for DNA extraction from both raw and processed meat samples comparing to other lysis buffers tested. Hence, the LB2 has been found to be ideal to detect meat and porcine DNAs by real-time PCR using pairs of porcine specific primers and universal primers which amplified at 119 bp fragment and 93 bp fragment, respectively. This assay allows detection as low as 0.0001 ng of DNA. Higher efficiency and sensitivity of real-time PCR via a simplified DNA extraction method using LB2 have been observed, as well as a reproducible and high correlation coefficient (R2 = 0.9979) based on the regression analysis of the standard curve have been obtained. Conclusion: This study has established a fast, simple, inexpensive and efficient DNA extraction method that is feasible for raw and processed meat products. This extraction technique allows an accurate DNA detection by real-time PCR and can also be implemented to assist the halal authentication of various meat-based products available in the market. © 2019 Society of Chemical Industry

Effects of the dietary supplementation of mixed probiotic spores of Bacillus amyloliquefaciens 54A, and Bacillus pumilus 47B on growth, innate immunity and stress responses of striped catfish (Pangasianodon hypophthalmus)

The study used the mixed probiotics of Bacillus amyloliquefaciens 54A and B. pumilus 47B isolated from striped catfish (Pangasianodon hypophthalmus) intestine aiming to stimulate growth performance, innate immunity, stress tolerance of striped catfish. The average weight gain (AWG), specific growth rate (SGR), and feed conversion ratio (FCR) were analyzed after fish were fed the mixture of probiotics (B. amyloliquefaciens 54A and B. pumilus 47B) at concentrations of 1 108, 3 108, and 5 108 CFU g 1 feed for 90 days. Immunity parameters, survival rate of fish challenged with Edwardsiella ictaluri and ammonia tolerance were also investigated. The amounts of B. amyloliquefaciens and B. pumilus were counted and identified by specific primer pairs of Ba1-F/Ba1-R, and 16-F/Bpu-R to confirm the presence of probiotics in fish intestine. The AWG (476.6 ± 7.81 g fish 1) of fish fed probiotics at 5 108 CFU g 1 was significant higher than the control (390 ± 25.7 g fish 1) after 90 days of feeding, but there was no significant (P > 0.05) effect of probiotics on FCR and SGR. Fish fed diet containing probiotics at 5 108 CFU g 1 also expressed resistance to E. ictaluri infection and higher immune parameters such as phagocytic activity, respiratory bursts, and lysozyme activity than the control. Stress response with ammonia showed significantly lower mortality rate (25%, 20% and 27%) of fish fed probiotics at all three levels of 1, 3 and 5 108 CFU g 1 than the fish fed control diet (75%). The study also demonstrated that the probiotics survived in the intestine of striped catfish after 90 days of feeding. Therefore, the dietary supplementation of a mixture of B. amyloliquefaciens and B. pumilus at 5 108 CFU g 1 can be used to improve the health and growth rate of striped catfish