Single laboratory comparison of MC-ICP-MS and N-TIMS boron isotope analyses in marine carbonates

Measurements of boron isotopes (δ11B) in marine carbonates are an important tool for reconstructing past ocean acidity and atmospheric carbon dioxide levels, but are challenging to obtain due to low boron concentrations and the presence of only two stable boron isotopes. Previous studies have observed differences in absolute δ11B values of marine carbonates measured via negative thermal ionization mass spectrometry (N-TIMS) and multicollector inductively coupled mass spectrometry (MC-ICP-MS) that are relatively large compared to magnitudes of δ11B variability in paleoceanographic studies. Here we investigate the cause of these δ11B offsets and implications for paleo-pH reconstructions by performing N-TIMS and MC-ICP-MS measurements within the same laboratory on a suite of eighteen homogenized samples, including inorganic calcites grown under controlled pH conditions and Quaternary planktic foraminifera. Results show that δ11B values between both measurement techniques are highly correlated (R2 > 0.99), but calcite δ11B values are ~ 0.5 to 2.7‰ lower when measured by MC-ICP-MS compared to N-TIMS. The δ11B offset between techniques cannot be attributed to procedural blank contribution, but the magnitude of offset moderately correlates with indicators of sample chemical composition, including B/Ca, Mg/Ca and δ18O (R2 = 0.39 to 0.50). N-TIMS δ11B does not change with calcium addition to a biogenic carbonate sample, suggesting that varying calcium abundance between samples and standards is not the reason for N-TIMS “matrix effects”. Correlation between δ18O and the δ11B offset is particularly apparent for calcites (R2 = 0.71); the origin of this relationship is not clear, but is not likely due to 17O interference. Although identifying the origin of measurement offsets requires further study, we demonstrate that such offsets do not affect the validity of δ11B data: The sensitivity of δ11B in inorganic calcite to pH is the same when measured by either technique, and paleo-pH reconstructed from δ11B measurements in planktic foraminifera is equivalent within uncertainty when a technique-specific constant offset is applied. Our results strongly indicate that δ11B measurements from both measurement techniques (N-TIMS and MC-ICP-MS) can be employed for paleo-pH reconstructions with equal confidence. Keywords Boron isotopes; Paleo-pH; Negative thermal ionization mass spectrometry (N-TIMS); Multicollector inductively coupled plasma mass spectrometry (MC-ICP-MS); Method intercompariso

Diet of the minimal armhook squid (Berryteuthis anonychus) (Cephalopoda: Gonatidae) in the northeast Pacific during spring

The stomach contents of the minimal armhook squid (Berryteuthis anonychus) were examined for 338 specimens captured in the northeast Pacific during May 1999. The specimens were collected at seven stations between 145−165°W and 39−49°N and ranged in mantle length from 10.3 to 102.2 mm. Their diet comprised seven major prey groups (copepods, chaetognaths, amphipods, euphausiids, ostracods, unidentified fish, and unidentified gelatinous prey) and was dominated by copepods and chaetognaths. Copepod prey comprised four genera, and 86% by number of the copepods were from the genus Neocalanus. Neocalanus cristatus was the most abundant prey taxa, composing 50% by mass and 35% by number of the total diet. Parasagitta elegans (Chaetognatha) occurred in more stomachs (47%) than any other prey taxon. Amphipods occurred in 19% of the stomachs but composed only 5% by number and 3% by mass of the total prey consumed. The four remaining prey groups (euphausiids, ostracods, unidentified fish, and unidentified gelatinous prey) together composed <2% by mass and <1% by number of the diet. There was no major change in the diet through the size range of squid examined and no evidence of cannibalism or predation on other cephalopod species

Chiral patterns arising from electrostatic growth models

Recently, unusual and strikingly beautiful seahorse-like growth patterns have been observed under conditions of quasi-two-dimensional growth. These `S'-shaped patterns strongly break two-dimensional inversion symmetry; however such broken symmetry occurs only at the level of overall morphology, as the clusters are formed from achiral molecules with an achiral unit cell. Here we describe a mechanism which gives rise to chiral growth morphologies without invoking microscopic chirality. This mechanism involves trapped electrostatic charge on the growing cluster, and the enhancement of growth in regions of large electric field. We illustrate the mechanism with a tree growth model, with a continuum model for the motion of the one-dimensional boundary, and with microscopic Monte Carlo simulations. Our most dramatic results are found using the continuum model, which strongly exhibits spontaneous chiral symmetry breaking, and in particular finned `S' shapes like those seen in the experiments.Comment: RevTeX, 12 pages, 9 figure

A PROBLEMÁTICA DO MONITORAMENTO DAS INFECÇÕES DE SÍTIO CIRÚRGICO E A NECESSIDADE DE PADRONIZAÇÃO DE CRITÉRIOS PARA SEU DIAGNÓSTICO E NOTIFICAÇÃO.

Las infecciones hospitalarias (IH) ocurren como un problema de salud pública mundial, siendo la Infección del Sitio Quirúrgico la tercera topografia más común, de 14% a 16% de todas las IH. Cuando un paciente muere por una causa asociada a la IH, 77% están relacionadas con la ISC; 93% de ellas con infecciones serias que invaden órganos o espacios accedidos durante un procedimiento quirúrgico. Directamente, las repercusiones de las ISC aparecen en los costos hospitalarios, pues aumentan la permanencia hospitalaria entre 7 a 10 días, amén de las readmisiones; pero, de manera indirecta, igualmente o más importante, están los costos indirectos que causan impactos emocionales desastrosos en los pacientes y en la familia. Los criterios más utilizados para diagnóstico de ISC son los Centers for Diseases Control (CDC); otros criterios desarrollados por especialistas ingleses como el National Prevalence Survey Study (NPS) también son utilizados. El objetivo de este estudio fue buscar una respuesta, en la literatura, para la práctica del controlador de infección hospitalaria en lo que respecta a la existencia de un “patrón-oro” para el diagnóstico de ISC, con el fin de soportar los resultados obtenidos y las consecuentes acciones. Una revisión sistemática ha mostrado que comparándose las definiciones del CDC y NPS de 93 heridas operatorias, 24% han quedado sin diagnóstico al utilizarse criterios del CDC y 19% cuando se utilizaron criterios del NPS. La conclusión de este estudio es que no hay un “patrón-oro” para el diagnóstico de ISC, pues el juicio es subjetivo, y sujeto a variaciones de acuerdo con el observador. Es necesario que cada servicio de salud junto al grupo Comissão de Controle de Infeccção Hospitalar -CCIH (Comisión de Control de Infección Hospitalaria) asuma y reglamente, por medio de la mejor evidencia científica, cuáles son los mejores criterios para diagnóstico y notificación de ISC, cuál es el mejor método de trabajo para vigilancia después del alta, teniendo en cuenta la factibilidad y las necesidades locales.As infecções hospitalares (IH) surgem como um problema de saúde pública mundial sendo a Infecção de Sítio Cirúrgico (ISC) a terceira topografia mais comum, de 14% a 16% de todas as IH. Quando um paciente morre por causa associada à IH, 77% estão relacionadas a ISC; 93% deles com infecções sérias que invadem órgãos ou espaços acessados durante o procedimento cirúrgico. Diretamente, as repercussões das ISC aparecem nos custos hospitalares pois aumentam a permanência hospitalar entre 7 a 10 dias, além das readmissões; mas de forma indireta e tão ou mais importante, estão os custos indiretos que provocam impactos emocionais desastrosos nos pacientes e familiares. Os critérios mais utilizados para diagnóstico de ISC são os do Centers for Diseases Control (CDC), outros critérios desenvolvidos por especialistas ingleses como o National Prevalence Survey Study (NPS) também são utilizados. O objetivo deste estudo foi buscar resposta, na literatura, para a pratica do controlador de infecção hospitalar no que tange a existência de um padrão ouro para o diagnostico de ISC, a fim de respaldar os resultados obtidos e as conseqüentes ações. Uma revisão sistemática mostrou que se comparando as definições do CDC e NPS de 93 feridas operatórias, 24% ficaram sem diagnóstico quando usados critérios do CDC e 19% quando usados critérios do NPS. A conclusão deste estudo é que não há padrão ouro, no diagnóstico de ISC, pois o julgamento é subjetivo e sujeito a variações de acordo com o observador. É preciso que cada serviço de saúde, junto ao grupo da Comissão de Controle de Infecção Hospitalar (CCIH) assuma e normatize, por meio da melhor evidência científica, quais os melhores critérios para diagnóstico e notificação de ISC, qual o melhor método de trabalho para vigilância no pós-alta; levando em conta a factibilidade e as necessidades locais

The Prosensory Function of Sox2 in the Chicken Inner Ear Relies on the Direct Regulation of Atoh1

The proneural gene Atoh1 is crucial for the development of inner ear hair cells and it requires the function of the transcription factor Sox2 through yet unknown mechanisms. In the present work, we used the chicken embryo and HEK293T cells to explore the regulation of Atoh1 by Sox2. The results show that hair cells derive from Sox2-positive otic progenitors and that Sox2 directly activates Atoh1 through a transcriptional activator function that requires the integrity of Sox2 DNA binding domain. Atoh1 activation depends on Sox transcription factor binding sites (SoxTFBS) present in the Atoh1 3′ enhancer where Sox2 directly binds, as shown by site directed mutagenesis and chromatin immunoprecipitation (ChIP). In the inner ear, Atoh1 enhancer activity is detected in the neurosensory domain and it depends on Sox2. Dominant negative competition (Sox2HMG-Engrailed) and mutation of the SoxTFBS abolish the reporter activity in vivo. Moreover, ChIP assay in isolated otic vesicles shows that Sox2 is bound to the Atoh1 enhancer in vivo. However, besides activating Atoh1, Sox2 also promotes the expression of Atoh1 negative regulators and the temporal profile of Atoh1 activation by Sox2 is transient suggesting that Sox2 triggers an incoherent feed-forward loop. These results provide a mechanism for the prosensory function of Sox2 in the inner ear. We suggest that sensory competence is established early in otic development through the activation of Atoh1 by Sox2, however, hair cell differentiation is prevented until later stages by the parallel activation of negative regulators of Atoh1 function

Rapid Analysis of Listeria monocytogenes Cell Wall Teichoic Acid Carbohydrates by ESI-MS/MS

We report the application of electrospray ionization (ESI) mass spectrometry for compositional characterization of wall teichoic acids (WTA), a major component of Gram-positive bacterial cell walls. Tandem mass spectrometry (ESI-MS/MS) of purified and chemically hydrolyzed monomeric WTA components provided sufficient information to identify WTA monomers and their specific carbohydrate constituents. A lithium matrix was used for ionization of uncharged WTA monomers, and successfully applied to analyze the WTA molecules of four Listeria strains differing in carbohydrate substitution on a conserved polyribitol-phosphate backbone structure. Carbohydrate residues such as N-acetylglucosamine or rhamnose linked to the WTA could directly be identified by ESI-MS/MS, circumventing the need for quantitative analysis by gas chromatography. The presence of a terminal N-acetylglucosamine residue tethered to the ribitol was confirmed using fluorescently labeled wheat-germ agglutinin. In conclusion, the mass spectrometry method described here will greatly facilitate compositional analysis and characterization of teichoic acids and similar macromolecules from diverse bacterial species, and represents a significant advance in the identification of serovar-specific carbohydrates and sugar molecules on bacteria

Blood group terminology 2004: from the International Society of Blood Transfusion committee on terminology for red cell surface antigens

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/73460/1/j.1423-0410.2004.00564.x.pd

Identification and Replication of Three Novel Myopia Common Susceptibility Gene Loci on Chromosome 3q26 using Linkage and Linkage Disequilibrium Mapping

Refractive error is a highly heritable quantitative trait responsible for considerable morbidity. Following an initial genome-wide linkage study using microsatellite markers, we confirmed evidence for linkage to chromosome 3q26 and then conducted fine-scale association mapping using high-resolution linkage disequilibrium unit (LDU) maps. We used a preliminary discovery marker set across the 30-Mb region with an average SNP density of 1 SNP/15 kb (Map 1). Map 1 was divided into 51 LDU windows and additional SNPs were genotyped for six regions (Map 2) that showed preliminary evidence of multi-marker association using composite likelihood. A total of 575 cases and controls selected from the tails of the trait distribution were genotyped for the discovery sample. Malecot model estimates indicate three loci with putative common functional variants centred on MFN1 (180,566 kb; 95% confidence interval 180,505–180, 655 kb), approximately 156 kb upstream from alternate-splicing SOX2OT (182,595 kb; 95% CI 182,533–182,688 kb) and PSARL (184,386 kb; 95% CI 184,356–184,411 kb), with the loci showing modest to strong evidence of association for the Map 2 discovery samples (p<10−7, p<10−10, and p = 0.01, respectively). Using an unselected independent sample of 1,430 individuals, results replicated for the MFN1 (p = 0.006), SOX2OT (p = 0.0002), and PSARL (p = 0.0005) gene regions. MFN1 and PSARL both interact with OPA1 to regulate mitochondrial fusion and the inhibition of mitochondrial-led apoptosis, respectively. That two mitochondrial regulatory processes in the retina are implicated in the aetiology of myopia is surprising and is likely to provide novel insight into the molecular genetic basis of common myopia

Stemness of the Organ of Corti Relates to the Epigenetic Status of Sox2 Enhancers

In the adult mammalian auditory epithelium, the organ of Corti, loss of sensory hair cells results in permanent hearing loss. The underlying cause for the lack of regenerative response is the depletion of otic progenitors in the cell pool of the sensory epithelium. Here, we show that an increase in the sequence-specific methylation of the otic Sox2 enhancers NOP1 and NOP2 is correlated with a reduced self-renewal potential in vivo and in vitro; additionally, the degree of methylation of NOP1 and NOP2 is correlated with the dedifferentiation potential of postmitotic supporting cells into otic stem cells. Thus, the stemness the organ of Corti is related to the epigenetic status of the otic Sox2 enhancers. These observations validate the continued exploration of treatment strategies for dedifferentiating or reprogramming of differentiated supporting cells into progenitors to regenerate the damaged organ of Corti