Array-based iterative measurements of SmKS travel times and their constraints on outermost core structure

Vigorous convection in Earth's outer core led to the suggestion that it is chemically homogeneous. However, there is increasing seismic evidence for structural complexities close to the outer core's upper and lower boundaries. Both body waves and normal mode data have been used to estimate a P wave velocity, V_p, at the top of the outer core (the E’ layer), which is lower than that in the Preliminary Reference Earth Model. However, these low V_p models do not agree on the form of this velocity anomaly. One reason for this is the difficulty in retrieving and measuring SmKS arrival times. To address this issue, we propose a novel approach using data from seismic arrays to iteratively measure SmKS-SKKS-differential travel times. This approach extracts individual SmKS signal from mixed waveforms of the SmKS series, allowing us to reliably measure differential travel times. We successfully use this method to measure SmKS time delays from earthquakes in the Fiji‐Tonga and Vanuatu subduction zones. SmKS time delays are measured by waveform cross correlation between SmKS and SKKS, and the cross‐correlation coefficient allows us to access measurement quality. We also apply this iterative scheme to synthetic SmKS seismograms to investigate the 3‐D mantle structure's effects. The mantle structure corrections are not negligible for our data, and neglecting them could bias the V_p estimation of uppermost outer core. After mantle structure corrections, we can still see substantial time delays of S3KS, S4KS, and S5KS, supporting a low V_p at the top of Earth's outer core

Seismic probes of solar interior magnetic structure

Sunspots are prominent manifestations of solar magnetoconvection and imaging their subsurface structure is an outstanding problem of wide physical importance. Travel times of seismic waves that propagate through these structures are typically used as inputs to inversions. Despite the presence of strongly anisotropic magnetic waveguides, these measurements have always been interpreted in terms of changes to isotropic wavespeeds and flow-advection related Doppler shifts. Here, we employ PDE-constrained optimization to determine the appropriate parameterization of the structural properties of the magnetic interior. Seven different wavespeeds fully characterize helioseismic wave propagation: the isotropic sound speed, a Doppler-shifting flow-advection velocity and an anisotropic magnetic velocity. The structure of magnetic media is sensed by magnetoacoustic slow and fast modes and Alfv\'{e}n waves, each of which propagates at a different wavespeed. We show that even in the case of weak magnetic fields, significant errors may be incurred if these anisotropies are not accounted for in inversions. Translation invariance is demonstrably lost. These developments render plausible the accurate seismic imaging of magnetoconvection in the Sun.Comment: 4 pages, 4 figures, accepted Physical Review Letter

Metaxanine, A Systemic Fungicide Against Plasmopara Viticola on Wine Grapes: Disease Control, Residues and Effect on Fermentation and Wine Quality

The systemic fungicide metaxanine/methyl D, L-N-(2,6-dimethyl-phenyl)-N-(2 methoxyacetyl) alaninate/, was compared with mancozeb for the control of Plasmopara viticola (B x C) Berl. & de T. on grapevines in the Western Cape Province of South Africa. The systemic fungicide gave better control thanmancozeb. Good control was obtained with applications of the systemic fungicide at 21 day intervals, despite the fact that weather conditions were particularly favourable for disease development. Residues of metaxanine recovered from grapes were low and did not affect either the onset, or the rate of fermentation of grape juice, nor did it affect wine quality

Hard x-ray photon-in-photon-out spectroscopy with lifetime resolution – of XAS, XES, RIXSS and HERFD

Spectroscopic techniques that aim to resolve the electronic configuration and local coordination of a central atom by detecting inner-shell radiative decays following photoexcitation using hard X-rays are presented. The experimental setup requires an X-ray spectrometer based on perfect crystal Bragg optics. The possibilities arising from non-resonant (X-Ray Emission Spectroscopy - XES) and resonant excitation (Resonant Inelastic X-Ray Scattering Spectroscopy – RIXSS, High-Energy-Resolution Fluorescence Detected (HERFD) XAS) are discussed when the instrumental energy broadenings of the primary (beamline) monochromator and the crystal spectrometer for x-ray emission detection are on the order of the core hole lifetimes of the intermediate and final electronic states. The small energy bandwidth in the emission detection yields line-sharpened absorption features. In transition metal compounds, electron-electron interactions as well as orbital splittings and fractional population can be revealed. Combination with EXAFS spectroscopy enables to extent the k-range beyond unwanted absorption edges in the sample that limit the EXAFS range in conventional absorption spectroscopy

An axisymmetric time-domain spectral-element method for full-wave simulations: Application to ocean acoustics

The numerical simulation of acoustic waves in complex 3D media is a key topic in many branches of science, from exploration geophysics to non-destructive testing and medical imaging. With the drastic increase in computing capabilities this field has dramatically grown in the last twenty years. However many 3D computations, especially at high frequency and/or long range, are still far beyond current reach and force researchers to resort to approximations, for example by working in 2D (plane strain) or by using a paraxial approximation. This article presents and validates a numerical technique based on an axisymmetric formulation of a spectral finite-element method in the time domain for heterogeneous fluid-solid media. Taking advantage of axisymmetry enables the study of relevant 3D configurations at a very moderate computational cost. The axisymmetric spectral-element formulation is first introduced, and validation tests are then performed. A typical application of interest in ocean acoustics showing upslope propagation above a dipping viscoelastic ocean bottom is then presented. The method correctly models backscattered waves and explains the transmission losses discrepancies pointed out in Jensen et al. (2007). Finally, a realistic application to a double seamount problem is considered.Comment: Added a reference, and fixed a typo (cylindrical versus spherical

Anelasticity across seismic to tidal timescales: a self-consistent approach

In a pioneering study, Wahr & Bergen developed the widely adopted, pseudo-normal mode framework for predicting the impact of anelastic effects on the Earth's body tides. Lau $\textit{et al.}$ have recently derived an extended normal mode treatment of the problem (as well as a minor variant of the theory known as the direct solution method) that makes full use of theoretical developments in free oscillation seismology spanning the last quarter century and that avoids a series of assumptions and approximations adopted in the traditional theory for predicting anelastic effects. There are two noteworthy differences between these two theories: (1) the traditional theory only considers perturbations to the eigenmodes of an elastic Earth, whereas the new theory augments this set of modes to include the relaxation modes that arise in anelastic behaviour; and (2) the traditional theory approximates the complex perturbation to the tidal Love number as a scaled version of the complex perturbation to the elastic moduli, whereas the new theory computes the full complex perturbation to each eigenmode. In this study, we highlight the above differences using a series of synthetic calculations, and demonstrate that the traditional theory can introduce significant error in predictions of the complex perturbation to the Love numbers due to anelasticity and the related predictions of tidal lag angles. For the simplified Earth models we adopt, the computed lag angles differ by ∼20 per cent. The assumptions in the traditional theory have important implications for previous studies that use model predictions to correct observables for body tide signals or that analyse observations of body tide deformation to infer mantle anelastic structure. Finally, we also highlight the fundamental difference between apparent attenuation (i.e. attenuation inferred from observations or predicted using the above theories) and intrinsic attenuation (i.e. the material property investigated through experiments), where both are often expressed in terms of lag angles or $\textit{Q}$$^{-1}$. In particular, we demonstrate the potentially significant (factor of two or more) bias introduced in estimates of $\textit{Q}$$^{-1}$ and its frequency dependence in studies that have treated $\textit{Q}$$^{-1}$ determined from tidal phase lags or measured experimentally as being equal. The observed or theoretically predicted lag angle (or apparent $\textit{Q}$$^{-1}$) differs from the intrinsic, material property due to inertia, self-gravity and effects associated with the energy budget. By accounting for these differences we derive, for a special case, an expression that accurately maps apparent attenuation predicted using the extended normal mode formalism of Lau $\textit{et al.}$ into intrinsic attenuation. The theory allows for more generalized mappings which may be used to robustly connect observations and predictions of tidal lag angles to results from laboratory experiments of mantle materials.This work was supported by NSF EAR-1464024, NSF EAR-1215061, and Harvard University

Rainfall threshold for hillslope outflow: an emergent property of flow pathway connectivity

Nonlinear relations between rain input and hillslope outflow are common observations in hillslope hydrology field studies. In this paper we use percolation theory to model the threshold relationship between rainfall amount and outflow and show that this nonlinear relationship may arise from simple linear processes at the smaller scale. When the rainfall amount exceeds a threshold value, the underlying elements become connected and water flows out of the base of the hillslope. The percolation approach shows how random variations in storage capacity and connectivity at the small spatial scale cause a threshold relationship between rainstorm amount and hillslope outflow. <br><br> As a test case, we applied percolation theory to the well characterized experimental hillslope at the Panola Mountain Research Watershed. Analysing the measured rainstorm events and the subsurface stormflow with percolation theory, we could determine the effect of bedrock permeability, spatial distribution of soil properties and initial water content within the hillslope. The measured variation in the relationship between rainstorm amount and subsurface flow could be reproduced by modelling the initial moisture deficit, the loss of free water to the bedrock, the limited size of the system and the connectivity that is a function of bedrock topography and existence of macropores. The values of the model parameters were in agreement with measured values of soil depth distribution and water saturation

Presence of Borrelia burgdorferi sensu lato antibodies in the serum of patients with abdominal aortic aneurysms

Infectious agents are likely to play a role in the pathogenesis of chronic inflammatory diseases, including abdominal aortic aneurysms (AAAs). The goal of this study was to determine if Borrelia burgdorferi sensu lato (sl), a microorganism responsible for Lyme disease, is involved in the etiology of AAAs. The presence of serum antibodies against B. burgdorferi sl was measured with enzyme-linked immunosorbent assay (ELISA) and confirmed by Western blotting in 96 AAA and 108 peripheral artery disease (PAD) patients. Polymerase chain reaction (PCR) was used for the detection of Borrelia-specific DNA in the aneurysm wall. Among AAA patients 34% and among PAD patients 16% were seropositive for B. burgdorferi sl antibodies (Fisher’s exact test, p = 0.003; odds ratio [OR] 2.79; 95% confidence interval [CI] 1.37–5.85). In the German general population, 3–17% are seropositive for Borrelia antibodies. No Borrelia DNA was detected in the aneurysm wall. Our findings suggest a relationship between AAAs and B. burgdorferi sl. We hypothesize that the underlying mechanism for B. burgdorferi sl in AAA formation is similar to that by the spirochete Treponema pallidum; alternatively, AAAs could develop due to induced autoimmunity via molecular mimicry due to similarities between some of the B. burgdorferi sl proteins and aortic proteins

Computing exact P-values for DNA motifs

Motivation: Many heuristic algorithms have been designed to approximate P-values of DNA motifs described by position weight matrices, for evaluating their statistical significance. They often significantly deviate from the true P-value by orders of magnitude. Exact P-value computation is needed for ranking the motifs. Furthermore, surprisingly, the complexity of the problem is unknown. Results: We show the problem to be NP-hard, and present MotifRank, software based on dynamic programming, to calculate exact P-values of motifs. We define the exact P-value on a general and more precise model. Asymptotically, MotifRank is faster than the best exact P-value computing algorithm, and is in fact practical. Our experiments clearly demonstrate that MotifRank significantly improves the accuracy of existing approximation algorithms