An investigation of matrix population model assumptions: wrens (Troglodytes troglodytes) as a case study

A simulation matrix population model of a small population of wrens (Troglodytes troglodytes) is presented. The field work methods used to obtain and analyse the demographic rates are provided. This includes a description of the use of miniature radio tags to track juvenile (post-fledging) survival and dispersal, and capture mark recapture analysis of an eight year dataset to estimate adult survival rates, taking into account environmental variation and density dependence. Age related reproductive rates were obtained from detailed nest surveys. Using these demographic rates (means and variances), and information on density dependence in survival and breeding, a simulation matrix model was developed using Matlab (The MathWorks, Inc.). The operation of this model and its outputs are explained in detail, with particular reference to the methods employed to incorporate both density dependent survival and reproduction and environmental and demographic stochasticity. This model is then used to illustrate how, under plausible conditions of density dependence and stochasticity, large discrepancies are obtained between the deterministic, density independent elasticities of the population growth rate (λ) and the stochastic, density dependent elasticities of the equilibrium population size, extinction probability and invasion exponent. Since the elasticities of λ are often used to guide the management of endangered species, these results are particularly relevant to workers in the field of rare species conservation. While the importance of including environmental variation in the form of stochastic population simulations seems to now be generally accepted, the role of density dependent population regulation is still infrequently considered. Since one of the most common causes of population decline is habitat destruction, leading to an increase in population density within the remaining areas of habitat, this omission may rarely be justified. It is recommended that when elasticity analysis is conducted as part of species conservation efforts, both density dependence and stochasticity are included. Failure to do so may result in the misguided management of endangered species

Mitigation of Pesticide Toxicity by Food-Grade Lactobacilli

Lactobacilli are Gram-positive bacteria used in fermented foods. Many species are commensal microbiota members that confer host benefits. This thesis investigated lactobacilli mitigation of organophosphate and neonicotinoid pesticide toxicity in mammals and insects, respectively. Lactobacillus rhamnosus GG (LGG) and GR-1 (LGR-1) were found to sequester, but not metabolize, organophosphate pesticides (parathion and chlorpyrifos) in solution. For LGG, this sequestration reduced organophosphate pesticide absorption in a Caco-2 intestinal Transwell model and promoted survival of Drosophila melanogaster lethally exposed to chlorpyrifos. Supplementation of mice with LGR-1 was found to alter host xenobiotic metabolism in the liver, and consequently chlorpyrifos metabolism following acute exposure. Drosophila supplemented with L. plantarum, a species indigenous to the fly, elicited an immune response that was correlated with increased survival following imidacloprid (neonicotinoid) exposure. Taken together, these experiments suggest that humans and honeybees could benefit from simple and affordable dietary supplementation with Lactobacillus strains to offset pesticide exposure

Development of a smoke visualisation system for wind tunnel laboratory experiments

The design, build and test of a smoke visualisation system for a vertical wind tunnel at Brunel University are described. The smoke visualisation system utilised a fog machine for smoke generation and required the design and manufacture of a smoke rake to produce smoke lines inside the wind tunnel test section. The application of these smoke lines over several test objects, including wing sections and bluff body shapes, demonstrated the functionality of the smoke system in producing high-quality visualisations. The facility has proven to be an economic addition in supporting other research projects and is anticipated to be a valuable ‘hands on’ addition to existing aerospace laboratory teaching

β-cell insulin receptor deficiency during in utero development induces an islet compensatory overgrowth response

The presence of insulin receptor (IR) on β-cells suggests that insulin has an autocrine/paracrine role in the regulation of β-cell function. It has previously been reported that the β-cell specific loss of IR (βIRKO) leads to the development of impaired glycemic regulation and β-cell death in mice. However, temporally controlled βIRKO induced during the distinct transitions of fetal pancreas development has yet to be investigated. We hypothesized that the presence of IR on β-cells during the 2nd transition phase of the fetal murine pancreas is required for maintaining normal islet development. We utilized a mouse insulin 1 promoter driven tamoxifeninducible Cre-recombinase IR knockout (MIP-βIRKO) mouse model to investigate the loss of β-cell IR during pancreatic development at embryonic day (e) 13, a phase of endocrine proliferation and β-cell fate determination. Fetal pancreata examined at e19-20 showed significantly reduced IR levels in the β-cells of MIP-βIRKO mice. Morphologically, MIP-βIRKO pancreata exhibited significantly enlarged islet size with increased β-cell area and proliferation. MIP-βIRKO pancreata also displayed significantly increased Igf-2 protein level and Akt activity with a reduction in phospho-p53 when compared to control littermates. Islet vascular formation and Vegf-a protein level was significantly increased in MIP-βIRKO pancreata. Our results demonstrate a developmental role for the β-cell IR, whereby its loss leads to an islet compensatory overgrowth, and contributes further information towards elucidating the temporally sensitive signaling during β-cell commitment

Fibrin supports human fetal islet-epithelial cell differentiation via p70 s6k and promotes vascular formation during transplantation

The human fetal pancreas expresses a variety of extracellular matrix (ECM) binding receptors known as integrins. A provisional ECM protein found in blood clots that can bind to integrin receptors and promote β cell function and survival is fibrin. However, its role in support of human fetal pancreatic cells is unknown. We investigated how fibrin promotes human fetal pancreatic cell differentiation in vitro and in vivo. Human fetal pancreata were collected from 15 to 21 weeks of gestation and collagenase digested. Cells were then plated on tissue-culture polystyrene, or with 2D or 3D fibrin gels up to 2 weeks, or subcutaneously transplanted in 3D fibrin gels. The human fetal pancreas contained rich ECM proteins and expressed integrin αVβ3. Fibrin-cultured human fetal pancreatic cells had significantly increased expression of PDX-1, glucagon, insulin, and VEGF-A, along with increased integrin αVβ3 and phosphorylated FAK and p70 s6k. Fibrin-cultured cells treated with rapamycin, the mTOR pathway inhibitor, had significantly decreased phospho-p70 s6k and PDX-1 expression. Transplanting fibrin-mixed cells into nude mice improved vascularization compared with collagen controls. These results suggest that fibrin supports islet cell differentiation via p70 s6k and promotes vascularization in human fetal islet-epithelial clusters in vivo

An investigation of matrix population model assumptions : wrens (Troglodytes troglodytes) as a case study

A simulation matrix population model of a small population of wrens (Troglodytes troglodytes) is presented. The field work methods used to obtain and analyse the demographic rates are provided. This includes a description of the use of miniature radio tags to track juvenile (post-fledging) survival and dispersal, and capture mark recapture analysis of an eight year dataset to estimate adult survival rates, taking into account environmental variation and density dependence. Age related reproductive rates were obtained from detailed nest surveys. Using these demographic rates (means and variances), and information on density dependence in survival and breeding, a simulation matrix model was developed using Matlab (The MathWorks, Inc.). The operation of this model and its outputs are explained in detail, with particular reference to the methods employed to incorporate both density dependent survival and reproduction and environmental and demographic stochasticity. This model is then used to illustrate how, under plausible conditions of density dependence and stochasticity, large discrepancies are obtained between the deterministic, density independent elasticities of the population growth rate (λ) and the stochastic, density dependent elasticities of the equilibrium population size, extinction probability and invasion exponent. Since the elasticities of λ are often used to guide the management of endangered species, these results are particularly relevant to workers in the field of rare species conservation. While the importance of including environmental variation in the form of stochastic population simulations seems to now be generally accepted, the role of density dependent population regulation is still infrequently considered. Since one of the most common causes of population decline is habitat destruction, leading to an increase in population density within the remaining areas of habitat, this omission may rarely be justified. It is recommended that when elasticity analysis is conducted as part of species conservation efforts, both density dependence and stochasticity are included. Failure to do so may result in the misguided management of endangered species.EThOS - Electronic Theses Online ServiceGBUnited Kingdo

A prospective cohort examination of haematological parameters in relation to cancer death and incidence: the Busselton Health Study

BACKGROUND: Cancer risk is associated with serum iron levels. The aim of this study was to evaluate whether haematological parameters reflect serum iron levels and may also be associated with cancer risk. METHODS: We studied 1564 men and 1769 women who were enrolled in the Busselton Health Study, Western Australia. Haematological parameters evaluated included haemoglobin (Hb), mean cell volume (MCV), mean cell haemoglobin (MCH) and mean cell haemoglobin concentration (MCHC) and red cell distribution width (RCDW). Statistical analyses included t-tests for quantitative variables, chi-square tests for categorical variables and Cox proportional hazards regression modelling for cancer incidence and death. RESULTS: There was marginal evidence of an association between MCV (as a continuous variable) and non-skin cancer incidence in women (HR 1.15, 95% CI 1.013, 1.302; p = 0.030) but the hazard ratio was attenuated to non-significance after adjustment for serum ferritin (SF), iron and transferrin saturation (TS) (HR 1.11, 95% CI 0.972, 1.264; p = 0.126). There was strong evidence of an association between MCHC and prostate cancer incidence in men; the estimated hazard ratio for an increase of one SD (0.5) in MCHC was 1.27 (95% CI 1.064, 1.507; p = 0.008). These results remained significant after further adjustment for SF and iron; the estimated hazard ratio for an increase of one SD (0.5) in MCHC was 1.25 (p = 0.014, 95% CI 1.05 to 1.48). CONCLUSIONS: The MCHC and MCV were associated with cancer incidence in a Western Australian population, although only MCHC remained associated with prostate cancer after adjusting with serum iron and TS (circulating iron) and SF (storage iron). Haematological parameters are thus of limited utility in population profiling for future cancer risk

Neonicotinoid-induced pathogen susceptibility is mitigated by Lactobacillus plantarum immune stimulation in a Drosophila melanogaster model

© 2017 The Author(s). Pesticides are used extensively in food production to maximize crop yields. However, neonicotinoid insecticides exert unintentional toxicity to honey bees (Apis mellifera) that may partially be associated with massive population declines referred to as colony collapse disorder. We hypothesized that imidacloprid (common neonicotinoid; IMI) exposure would make Drosophila melanogaster (an insect model for the honey bee) more susceptible to bacterial pathogens, heat stress, and intestinal dysbiosis. Our results suggested that the immune deficiency (IMD) pathway is necessary for D. melanogaster survival in response to IMI toxicity. IMI exposure induced alterations in the host-microbiota as noted by increased indigenous Acetobacter and Lactobacillus spp. Furthermore, sub-lethal exposure to IMI resulted in decreased D. melanogaster survival when simultaneously exposed to bacterial infection and heat stress (37 °C). This coincided with exacerbated increases in TotA and Dpt (IMD downstream pro-survival and antimicrobial genes, respectively) expression compared to controls. Supplementation of IMI-exposed D. melanogaster with Lactobacillus plantarum ATCC 14917 mitigated survival deficits following Serratia marcescens (bacterial pathogen) septic infection. These findings support the insidious toxicity of neonicotinoid pesticides and potential for probiotic lactobacilli to reduce IMI-induced susceptibility to infection

Immobilization of cadmium and lead by Lactobacillus rhamnosus GR-1 mitigates apical-to-basolateral heavy metal translocation in a Caco-2 model of the intestinal epithelium

© 2018, © 2018 The Author(s). Published by Taylor & Francis. Heavy metals are highly toxic elements that contaminate the global food supply and affect human and wildlife health. Purification technologies are often too expensive or not practically applicable for large-scale implementation, especially in impoverished nations where heavy metal contamination is widespread. Lactobacillus rhamnosus GR-1 (LGR-1) was shown in previous work to reduce heavy metal bioaccumulation in a Tanzanian cohort of women and children through indeterminant mechanisms. Here, it was hypothesized that LGR-1 could sequester the heavy metals lead (Pb) and cadmium (Cd), thereby reducing their absorption across intestinal epithelium. LGR-1 and other lactobacilli significantly reduced the amount of Pb and Cd in solution at all concentrations tested (0.5 mg/L–50 mg/L) and exhibited sustained binding profiles over a 48-hour period. Relative binding efficiency of LGR-1 decreased as Pb concentration increased, with an absolute minimum binding threshold apparent at concentrations of 2 mg/L and above. Electron microscopy revealed that Pb formed irregular cell-surface clusters on LGR-1, while Cd appeared to form intracellular polymeric clusters. Additionally, LGR-1 was able to significantly reduce apical-to-basolateral translocation of Pb and Cd in a Caco-2 model of the intestinal epithelium. These findings demonstrate the absorbent properties of LGR-1 can immobilize Pb and Cd, effectively reducing their translocation across the intestinal epithelium in vitro. Oral administration of heavy metal-binding Lactobacillus spp. (many of which are known human symbionts and strains of established probiotics) may offer a simple and effective means to reduce the amount of heavy metals absorbed from foods in contaminated regions of the world

Litigants in person in private family law cases

This study was designed to develop the evidence base on litigants in person in private family law cases, including their behavioural drivers, experiences and support needs, and impact on the court prior to the implementation of legal aid reforms in April 2013. Fieldwork was conducted between January and March 2013. The study delivered primarily qualitative evidence. The researchers sampled 151 private law family cases where a hearing was observed, the court file examined and parties and professionals interviewed. To provide wider context, focus groups were also held with judges, court staff and lawyers