Estimating biophysical and geometrical parameters of grapevine canopies ('Sangiovese') by an unmanned aerial vehicle (UAV) and VIS-NIR cameras

Three zones of different vine vigour were identified in a mature vineyard (Vitis vinifera 'Sangiovese') to test the potential of the Visible-Near Infrared (VIS-NIR) spectral information acquired from an unmanned aerial vehicles (UAV) in estimating the leaf area index (LAI), leaf chlorophyll, pruning weight, canopy height and canopy volume of grapevines. A significant linear correlation between the normalized differential vegetation index (NDVI) and LAI or between NDVI and leaf chlorophyll was found at day of the year (DOY) 162 and 190, whereas in August the relationship between NDVI and leaf chlorophyll was less evident. The canopy volume of low-vigour (LV) vines was 35 and 45 % of the high-vigour (HV) and medium-vigour (MV) ones, respectively. The pruning weight was linearly correlated with NDVI values of each vigour cohort. A good correlation between the measured canopy volume and UAV-estimated one as well as between measured and estimated canopy height was found. Our results indicated that the combined use of VIS-NIR cameras and UAV is a rapid and reliable technique to determine canopy structure and LAI of grapevine

Impact of Cluster Thinning and Basal Leaf Removal on Fruit Quality of Cabernet Franc (Vitis vinifera L.) Grapevines Grown in Cool Climate Conditions

Achieving desired fruit quality at harvest in cool climate conditions is a challenge, especially for red varieties, and the typical inability of fruit to reach technological maturity is a critical contributing factor requiring examination. To probe this issue, this research investigated the impact of two levels of crop thinning and of basal leaf removal at three phenological stages in the 2011 and 2012 growing seasons in Michigan. Experiments were conducted at the Southwest Michigan Research and Extension Center (SWMREC) in Benton Harbor. Using \u2018Cabernet franc\u2019 (Vitis vinifera L.) vines, yield components (yield per vine, pruning weight, and cluster and berry weight) and basic fruit composition traits [total soluble solids (TSS), pH, titratable acidity, anthocyanins, and phenolics) were studied to investigate the effect of cluster thinning and basal leaf removal on vine performance and fruit quality at harvest. Neither of the treatments significantly impacted TSS in either of the two seasons. Cluster thinning treatment successfully altered cropload ratio, indexed as Ravaz Index (RI), independently of the time of application. Basal leaf removal increased exposed berry temperature, cluster light exposure, and subsequent anthocyanin and phenolic content of the berry in both seasons, again independent of application date, whereas cluster thinning was effective only in 2012. Crop thinning coupled with basal leaf removal resulted in an increased efficiency in anthocyanin accumulation in relation to TSS accumulation, expressed as anthocyanin:sugar, in both years. This is significant because it offers potential for vineyard management practices aiming to improve fruit quality in cool climates where the onset of anthocyanin accumulation could be reduced and decoupled from sugar accumulation

Immersive Virtual Environments and Wearable Haptic Devices in rehabilitation of children with neuromotor impairments: a single-blind randomized controlled crossover pilot study

Background: The past decade has seen the emergence of rehabilitation treatments using virtual reality. One of the advantages in using this technology is the potential to create positive motivation, by means of engaging environments and tasks shaped in the form of serious games. The aim of this study is to determine the efficacy of immersive Virtual Environments and weaRable hAptic devices (VERA) for rehabilitation of upper limb in children with Cerebral Palsy (CP) and Developmental Dyspraxia (DD). Methods: A two period cross-over design was adopted for determining the differences between the proposed therapy and a conventional treatment. Eight children were randomized into two groups: one group received the VERA treatment in the first period and the manual therapy in the second period, and viceversa for the other group. Children were assessed at the beginning and the end of each period through both the Nine Hole Peg Test (9-HPT, primary outcome) and Kinesiological Measurements obtained during the performing of similar tasks in a real setting scenario (secondary outcomes). Results: All subjects, not depending from which group they come from, significantly improved in both the performance of the 9-HPT and in the parameters of the kinesiological measurements (movement error and smoothness). No statistically significant differences have been found between the two groups. Conclusions: These findings suggest that immersive VE and wearable haptic devices is a viable alternative to conventional therapy for improving upper extremity function in children with neuromotor impairments. Trial registration ClinicalTrials, NCT03353623. Registered 27 November 2017-Retrospectively registered, https://clinicaltrials.gov/ct2/show/NCT03353623

Spontaneous formation and stability of small GaP fullerenes

We report the spontaneous formation of a GaP fullerene cage in ab-initio Molecular Dynamics simulations starting from a bulk fragment. A systematic study of the geometric and electronic properties of neutral and ionized GaP clusters suggests the stability of hetero-fullerenes formed by a compound with zincblend bulk structure. We find that GaP fullerenes up to 28 atoms have high symmetry, closed electronic shells, large HOMO-LUMO energy gaps and do not dissociate when ionized. We compare our results for GaP with those obtained by other groups for the corresponding BN clusters.Comment: To appear on PRL, 4 pages, 1 figure, Late

Mechanical Strength of 17 134 Model Proteins and Cysteine Slipknots

A new theoretical survey of proteins' resistance to constant speed stretching is performed for a set of 17 134 proteins as described by a structure-based model. The proteins selected have no gaps in their structure determination and consist of no more than 250 amino acids. Our previous studies have dealt with 7510 proteins of no more than 150 amino acids. The proteins are ranked according to the strength of the resistance. Most of the predicted top-strength proteins have not yet been studied experimentally. Architectures and folds which are likely to yield large forces are identified. New types of potent force clamps are discovered. They involve disulphide bridges and, in particular, cysteine slipknots. An effective energy parameter of the model is estimated by comparing the theoretical data on characteristic forces to the corresponding experimental values combined with an extrapolation of the theoretical data to the experimental pulling speeds. These studies provide guidance for future experiments on single molecule manipulation and should lead to selection of proteins for applications. A new class of proteins, involving cystein slipknots, is identified as one that is expected to lead to the strongest force clamps known. This class is characterized through molecular dynamics simulations.Comment: 40 pages, 13 PostScript figure

Improving Internal Peptide Dynamics in the Coarse-Grained MARTINI Model: Toward Large-Scale Simulations of Amyloid- and Elastin-like Peptides

We present an extension of the coarse-grained MARTINI model for proteins and apply this extension to amyloid- and elastin-like peptides. Atomistic simulations of tetrapeptides, octapeptides, and longer peptides in solution are used as a reference to parametrize a set of pseudodihedral potentials that describe the internal flexibility of MARTINI peptides. We assess the performance of the resulting model in reproducing various structural properties computed from atomistic trajectories of peptides in water. The addition of new dihedral angle potentials improves agreement with the contact maps computed from atomistic simulations significantly. We also address the question of which parameters derived from atomistic trajectories are transferable between different lengths of peptides. The modified coarse-grained model shows reasonable transferability of parameters for the amyloid- and elastin-like peptides. In addition, the improved coarse-grained model is also applied to investigate the self-assembly of β-sheet forming peptides on the microsecond time scale. The octapeptides SNNFGAIL and (GV)4 are used to examine peptide aggregation in different environments, in water, and at the water–octane interface. At the interface, peptide adsorption occurs rapidly, and peptides spontaneously aggregate in favor of stretched conformers resembling β-strands

Implementing efficient concerted rotations using Mathematica and C code

In this article we demonstrate a general and efficient metaprogramming implementation of concerted rotations using Mathematica. Concerted rotations allow the movement of a fixed portion of a polymer backbone with fixed bending angles, like a protein, while maintaining the correct geometry of the backbone and the initial and final points of the portion fixed. Our implementation uses Mathematica to generate a C code which is then wrapped in a library by a Python script. The user can modify the Mathematica notebook to generate a set of concerted rotations suited for a particular backbone geometry, without having to write the C code himself. The resulting code is highly optimized, performing on the order of thousands of operations per second