Transfer matrix solution of the Wako-Sait\^o-Mu\~noz-Eaton model augmented by arbitrary short range interactions

The Wako-Sait{\^o}-Mu\~noz-Eaton (WSME) model, initially introduced in the theory of protein folding, has also been used in modeling the RNA folding and some epitaxial phenomena. The advantage of this model is that it admits exact solution in the general inhomogeneous case (Bruscolini and Pelizzola, 2002) which facilitates the study of realistic systems. However, a shortcoming of the model is that it accounts only for interactions within continuous stretches of native bonds or atomic chains while neglecting interstretch (interchain) interactions. But due to the biopolymer (atomic chain) flexibility, the monomers (atoms) separated by several non-native bonds along the sequence can become closely spaced. This produces their strong interaction. The inclusion of non-WSME interactions into the model makes the model more realistic and improves its performance. In this study we add arbitrary interactions of finite range and solve the new model by means of the transfer matrix technique. We can therefore exactly account for the interactions which in proteomics are classified as medium- and moderately long-range ones.Comment: 15 pages, 2 figure

Constraints on the intrinsic charm content of the proton from recent ATLAS data

Constraints on the intrinsic charm probability \wccm = P_{{\mathrm{c}\bar \mathrm{c}} / \mathrm{p}} in the proton are obtained for the first time from LHC measurements. The ATLAS Collaboration data for the production of prompt photons, accompanied by a charm-quark jet in pp collisions at $\sqrt s = 8$ TeV, are used. The upper limit \mbox{\wccm < 1.93~\%} is obtained at the 68~\% confidence level. This constraint is primarily determined from the theoretical scale and systematical experimental uncertainties. Suggestions for reducing these uncertainties are discussed. The implications of intrinsic heavy quarks in the proton for future studies at the LHC are also discussed.Comment: 6 pages, 4 figure

An exactly solvable model for a beta-hairpin with random interactions

I investigate a disordered version of a simplified model of protein folding, with binary degrees of freedom, applied to an ideal beta-hairpin structure. Disorder is introduced by assuming that the contact energies are independent and identically distributed random variables. The equilibrium free-energy of the model is studied, performing the exact calculation of its quenched value and proving the self-averaging feature.Comment: 9 page

Theory of temperature dependence of the Fermi surface-induced splitting of the alloy diffuse-scattering intensity peak

The explanation is presented for the temperature dependence of the fourfold intensity peak splitting found recently in diffuse scattering from the disordered Cu3Au alloy. The wavevector and temperature dependence of the self-energy is identified as the origin of the observed behaviour. Two approaches for the calculation of the self-energy, the high-temperature expansion and the alpha-expansion, are proposed. Applied to the Cu3Au alloy, both methods predict the increase of the splitting with temperature, in agreement with the experimental results.Comment: 4 pages, 3 EPS figures, RevTeX, submitted to J. Phys. Condens. Matter (Letter to the Editor

Design and construction of new central and forward muon counters for CDF II

New scintillation counters have been designed and constructed for the CDF upgrade in order to complete the muon coverage of the central CDF detector, and to extend this coverage to larger pseudorapidity. A novel light collection technique using wavelength shifting fibers, together with high quality polystyrene-based scintillator resulted in compact counters with good and stable light collection efficiency over lengths extending up to 320 cm. Their design and construction is described and results of their initial performance are reported.Comment: 20 pages, 15 figure

Kinetostatics of Wheel Vehicle in the Category of Spiral-Screw Routes

International audienceDeterministic mathematical model of kinetostatics of wheel vehicle in terms of different modes of spatial motion in the context of curved route is proposed. Earth-based coordinate system is introduced which pole and axial orientation are determined by the convenience of route description as well as vehicle-related coordinates which pole axial orientation are determined within inertial space with the help of natural trihedral. Turn of the natural trihedral within inertial coordinates is described by means of quaternion matrices in the context of Rodrigues-Hamilton parameters. Rodrigues-Hamilton parameters are in matrix form in direct accordance with specified hodograph. Kinetostatics of wheel vehicle is considered in terms of spatial motion with an allowance for three-dimensional aerodynamic forces, gravity, and tangential and centrifugal inertial forces. In the context of spiral-screw lines deterministic mathematical model of wheel vehicle kinetostatics is proposed in the form of hodograph in terms of uniform motion, accelerated motion, and decelerated motion within following route sections: straight and horizontal; in terms of vertical grade; in terms of horizontal plane. Analytical approach to determine animated contact drive-control forces of wheel vehicle for structural diagrams having one and two support points involving of a driving-driven wheel characteristic is proposed based on kinetostatics equations. Mathematical model of wheel vehicle kinetostatics in terms of spatial motion is constructed on the basis of nonlinear differential Euler-Lagrange equations; it is proposed to consider physically implemented motion trajectories of wheel vehicles in the context of spiral-screw lines; hodograph determines spatial displacement; Rodrigues-Hamilton parameters determines spatial turn; Varignon theorem is applied to identify components of drive (control) force. The obtained results make it possible to solve a wide range of problems connected with dynamic design of wheel vehicles involving controllability, and estimation of dynamic load of both system and support surface

Distance learning as instrument of formation of readiness of teachers for use of information technologies

In article the specifics of formation of readiness of teachers of SVT for use of information technologies are reflected in educational process by means of remote technologiesВ статье отражена специфика формирования готовности преподавателей СПО к использованию информационных технологий в учебном процессе посредством дистанционных технологий. Актуальность данной темы определяется потребностью в непрерывном развитии ИКТ-компетенции, что продиктовано потребностями цифровой экономик