Climate variability in central equatorial Africa: Influence from the Atlantic sector.

We document a strong teleconnection between Central Equatorial African (CEA) rainfall (and Congo River discharge) and the large-scale circulation over the North Atlantic, throughout the boreal winter/spring season. Positive rainfall anomalies over CEA (at interannual and multi-annual timescales) are related to anomalous westerly mid-tropospheric zonal winds over the CEA/Atlantic region. These anomalies appear to be part of a coherent structure of zonal wind anomalies extending to the polar regions of the North Atlantic, similar to that associated with the NAO pattern. Idealised model simulations suggest that at least over the tropical and subtropical latitudes of the Atlantic/African sector such a signal may be associated with SST forcing from the Tropical North Atlantic (TNA) region. We conclude that TNA SSTs may force these circulation anomalies over CEA at multi-annual timescales but at interannual timescales they may be relatively independent of TNA SSTs

Microfluidics: Fluid physics at the nanoliter scale

Microfabricated integrated circuits revolutionized computation by vastly reducing the space, labor, and time required for calculations. Microfluidic systems hold similar promise for the large-scale automation of chemistry and biology, suggesting the possibility of numerous experiments performed rapidly and in parallel, while consuming little reagent. While it is too early to tell whether such a vision will be realized, significant progress has been achieved, and various applications of significant scientific and practical interest have been developed. Here a review of the physics of small volumes (nanoliters) of fluids is presented, as parametrized by a series of dimensionless numbers expressing the relative importance of various physical phenomena. Specifically, this review explores the Reynolds number Re, addressing inertial effects; the Péclet number Pe, which concerns convective and diffusive transport; the capillary number Ca expressing the importance of interfacial tension; the Deborah, Weissenberg, and elasticity numbers De, Wi, and El, describing elastic effects due to deformable microstructural elements like polymers; the Grashof and Rayleigh numbers Gr and Ra, describing density-driven flows; and the Knudsen number, describing the importance of noncontinuum molecular effects. Furthermore, the long-range nature of viscous flows and the small device dimensions inherent in microfluidics mean that the influence of boundaries is typically significant. A variety of strategies have been developed to manipulate fluids by exploiting boundary effects; among these are electrokinetic effects, acoustic streaming, and fluid-structure interactions. The goal is to describe the physics behind the rich variety of fluid phenomena occurring on the nanoliter scale using simple scaling arguments, with the hopes of developing an intuitive sense for this occasionally counterintuitive world

Fundamental Bounds on First Passage Time Fluctuations for Currents

Current is a characteristic feature of nonequilibrium systems. In stochastic systems, these currents exhibit fluctuations constrained by the rate of dissipation in accordance with the recently discovered thermodynamic uncertainty relation. Here, we derive a conjugate uncertainty relationship for the first passage time to accumulate a fixed net current. More generally, we use the tools of large-deviation theory to simply connect current fluctuations and first passage time fluctuations in the limit of long times and large currents. With this connection, previously discovered symmetries and bounds on the large-deviation function for currents are readily transferred to first passage times.Comment: 7 pages including S

Proof of the Finite-Time Thermodynamic Uncertainty Relation for Steady-State Currents

The thermodynamic uncertainty relation offers a universal energetic constraint on the relative magnitude of current fluctuations in nonequilibrium steady states. However, it has only been derived for long observation times. Here, we prove a recently conjectured finite-time thermodynamic uncertainty relation for steady-state current fluctuations. Our proof is based on a quadratic bound to the large deviation rate function for currents in the limit of a large ensemble of many copies.Comment: 3 page

Extra Shared Entanglement Reduces Memory Demand in Quantum Convolutional Coding

We show how extra entanglement shared between sender and receiver reduces the memory requirements for a general entanglement-assisted quantum convolutional code. We construct quantum convolutional codes with good error-correcting properties by exploiting the error-correcting properties of an arbitrary basic set of Pauli generators. The main benefit of this particular construction is that there is no need to increase the frame size of the code when extra shared entanglement is available. Then there is no need to increase the memory requirements or circuit complexity of the code because the frame size of the code is directly related to these two code properties. Another benefit, similar to results of previous work in entanglement-assisted convolutional coding, is that we can import an arbitrary classical quaternary code for use as an entanglement-assisted quantum convolutional code. The rate and error-correcting properties of the imported classical code translate to the quantum code. We provide an example that illustrates how to import a classical quaternary code for use as an entanglement-assisted quantum convolutional code. We finally show how to "piggyback" classical information to make use of the extra shared entanglement in the code.Comment: 7 pages, 1 figure, accepted for publication in Physical Review

Universal thermodynamic bounds on nonequilibrium response with biochemical applications

Diverse physical systems are characterized by their response to small perturbations. Near thermodynamic equilibrium, the fluctuation-dissipation theorem provides a powerful theoretical and experimental tool to determine the nature of response by observing spontaneous equilibrium fluctuations. In this spirit, we derive here a collection of equalities and inequalities valid arbitrarily far from equilibrium that constrain the response of nonequilibrium steady states in terms of the strength of nonequilibrium driving. Our work opens new avenues for characterizing nonequilibrium response. As illustrations, we show how our results rationalize the energetic requirements of two common biochemical motifs.Comment: 21 pages, 15 figure

Into the Light: Diurnality has Evolved Multiple Times in Geckos

Geckos are the only major lizard group consisting mostly of nocturnal species. Nocturnality is presumed to have evolved early in gecko evolution and geckos possess numerous adaptations to functioning in low light and at low temperatures. However, not all gecko species are nocturnal and most diurnal geckos have their own distinct adaptations to living in warmer, sunlit environments. We reconstructed the evolution of gecko activity patterns using a newly generated time-calibrated phylogeny. Our results provide the first phylogenetic analysis of temporal activity patterns in geckos and confirm an ancient origin of nocturnality at the root of the gecko tree. We identify multiple transitions to diurnality at a variety of evolutionary time scales and transitions back to nocturnality occur in several predominantly diurnal clades. The scenario presented here will be useful in reinterpreting existing hypotheses of how geckos have adapted to varying thermal and light environments. These results can also inform future research of gecko ecology, physiology, morphology and vision as it relates to changes in temporal activity patterns

USING CALLING ACTIVITY TO PREDICT CALLING ACTIVITY: A CASE STUDY WITH THE ENDANGERED HOUSTON TOAD (BUFO [ANAXYRUS] HOUSTONENSIS)

Understanding anuran calling activity patterns is important for maximizing efficiency and value of call survey data collection and analyses. Previous studies have primarily focused on identifying and quantifying abiotic variables that influence anuran calling activity, and investigating relationships between calling activity and population estimates. In this study we investigated the use of a predictor pond approach to guide call survey effort. In this approach, calling activity at a subset of breeding sites (e.g., ponds) is used as a predictor of calling activity at additional breeding sites, with the goal being to minimize sampling effort while simultaneously maximizing sampling efficiency. We explored the efficiency of this approach using call survey data collected on the endangered Houston Toad (Bufo [Anaxyrus] houstonensis) at 15 known breeding ponds over 9 survey years. We found that if calling activity at 3 predictor ponds was used to decide if additional call surveys would occur at the remaining 12 ponds, we would have hypothetically correctly assumed calling activity was not occurring at non-predictor ponds on 92.1% of survey nights, and we would have hypothetically detected 93.9% of the total number of detected individuals over the 9 survey years. We found the predictor pond approach performed well in our case study, and believe it could be a valuable tool for many anuran monitoring programs

A comparative analysis of projected impacts of climate change on river runoff from global and catchment-scale hydrological models

We present a comparative analysis of projected impacts of climate change on river runoff from two types of distributed hydrological model, a global hydrological model (GHM) and catchment-scale hydrological models (CHM). Analyses are conducted for six catchments that are global in coverage and feature strong contrasts in spatial scale as well as climatic and development conditions. These include the Liard (Canada), Mekong (SE Asia), Okavango (SW Africa), Rio Grande (Brazil), Xiangu (China) and Harper's Brook (UK). A single GHM (Mac-PDM.09) is applied to all catchments whilst different CHMs are applied for each catchment. The CHMs typically simulate water resources impacts based on a more explicit representation of catchment water resources than that available from the GHM, and the CHMs include river routing. Simulations of average annual runoff, mean monthly runoff and high (Q5) and low (Q95) monthly runoff under baseline (1961-1990) and climate change scenarios are presented. We compare the simulated runoff response of each hydrological model to (1) prescribed increases in global mean temperature from the HadCM3 climate model and (2)a prescribed increase in global-mean temperature of 2oC for seven GCMs to explore response to climate model and structural uncertainty. We find that differences in projected changes of mean annual runoff between the two types of hydrological model can be substantial for a given GCM, and they are generally larger for indicators of high and low flow. However, they are relatively small in comparison to the range of projections across the seven GCMs. Hence, for the six catchments and seven GCMs we considered, climate model structural uncertainty is greater than the uncertainty associated with the type of hydrological model applied. Moreover, shifts in the seasonal cycle of runoff with climate change are presented similarly by both hydrological models, although for some catchments the monthly timing of high and low flows differs.This implies that for studies that seek to quantify and assess the role of climate model uncertainty on catchment-scale runoff, it may be equally as feasible to apply a GHM as it is to apply a CHM, especially when climate modelling uncertainty across the range of available GCMs is as large as it currently is. Whilst the GHM is able to represent the broad climate change signal that is represented by the CHMs, we find, however, that for some catchments there are differences between GHMs and CHMs in mean annual runoff due to differences in potential evaporation estimation methods, in the representation of the seasonality of runoff, and in the magnitude of changes in extreme monthly runoff, all of which have implications for future water management issues