UniCoRN: Unified Cognitive Signal ReconstructioN bridging cognitive signals and human language

Decoding text stimuli from cognitive signals (e.g. fMRI) enhances our understanding of the human language system, paving the way for building versatile Brain-Computer Interface. However, existing studies largely focus on decoding individual word-level fMRI volumes from a restricted vocabulary, which is far too idealized for real-world application. In this paper, we propose fMRI2text, the first openvocabulary task aiming to bridge fMRI time series and human language. Furthermore, to explore the potential of this new task, we present a baseline solution, UniCoRN: the Unified Cognitive Signal ReconstructioN for Brain Decoding. By reconstructing both individual time points and time series, UniCoRN establishes a robust encoder for cognitive signals (fMRI & EEG). Leveraging a pre-trained language model as decoder, UniCoRN proves its efficacy in decoding coherent text from fMRI series across various split settings. Our model achieves a 34.77% BLEU score on fMRI2text, and a 37.04% BLEU when generalized to EEGto-text decoding, thereby surpassing the former baseline. Experimental results indicate the feasibility of decoding consecutive fMRI volumes, and the effectiveness of decoding different cognitive signals using a unified structure.Comment: the 61st Annual Meeting of the Association for Computational Linguistic

Manifold-based Verbalizer Space Re-embedding for Tuning-free Prompt-based Classification

Prompt-based classification adapts tasks to a cloze question format utilizing the [MASK] token and the filled tokens are then mapped to labels through pre-defined verbalizers. Recent studies have explored the use of verbalizer embeddings to reduce labor in this process. However, all existing studies require a tuning process for either the pre-trained models or additional trainable embeddings. Meanwhile, the distance between high-dimensional verbalizer embeddings should not be measured by Euclidean distance due to the potential for non-linear manifolds in the representation space. In this study, we propose a tuning-free manifold-based space re-embedding method called Locally Linear Embedding with Intra-class Neighborhood Constraint (LLE-INC) for verbalizer embeddings, which preserves local properties within the same class as guidance for classification. Experimental results indicate that even without tuning any parameters, our LLE-INC is on par with automated verbalizers with parameter tuning. And with the parameter updating, our approach further enhances prompt-based tuning by up to 3.2%. Furthermore, experiments with the LLaMA-7B&13B indicate that LLE-INC is an efficient tuning-free classification approach for the hyper-scale language models.Comment: 11 pages, 3 figure

Cross-Inlining Binary Function Similarity Detection

Binary function similarity detection plays an important role in a wide range of security applications. Existing works usually assume that the query function and target function share equal semantics and compare their full semantics to obtain the similarity. However, we find that the function mapping is more complex, especially when function inlining happens. In this paper, we will systematically investigate cross-inlining binary function similarity detection. We first construct a cross-inlining dataset by compiling 51 projects using 9 compilers, with 4 optimizations, to 6 architectures, with 2 inlining flags, which results in two datasets both with 216 combinations. Then we construct the cross-inlining function mappings by linking the common source functions in these two datasets. Through analysis of this dataset, we find that three cross-inlining patterns widely exist while existing work suffers when detecting cross-inlining binary function similarity. Next, we propose a pattern-based model named CI-Detector for cross-inlining matching. CI-Detector uses the attributed CFG to represent the semantics of binary functions and GNN to embed binary functions into vectors. CI-Detector respectively trains a model for these three cross-inlining patterns. Finally, the testing pairs are input to these three models and all the produced similarities are aggregated to produce the final similarity. We conduct several experiments to evaluate CI-Detector. Results show that CI-Detector can detect cross-inlining pairs with a precision of 81% and a recall of 97%, which exceeds all state-of-the-art works.Comment: Accepted at ICSE 2024 (Second Cycle). Camera-ready versio

Fault diagnosis and fault-tolerant control for system with fast time-varying delay

This paper proposes a fault diagnosis and fault-tolerant control method for a system with a fast time-varying delay and time-varying parameters. A fault observer is designed to estimate faults, and an improved fast adaptive fault estimation (FAFE) algorithm is developed to reduce the relevant constraints in the general form of this algorithm. With newly introduced relaxation matrices, this study estimates faults in a system exhibiting a fast time-varying delay. Based on the estimated faults, an output feedback controller is designed to accommodate the faults. The fault-tolerant control is realized using the introduced relaxation matrices. An algorithm is derived to solve for the observer and controller. Finally, the theory and method are validated using a real example of a helicopter system

Repositioning proton pump inhibitors as anticancer drugs by targeting the thioesterase domain of human fatty acid synthase

Fatty acid synthase (FASN), the enzyme responsible for de novo synthesis of free fatty acids, is up-regulated in many cancers. FASN is essential for cancer cell survival and contributes to drug resistance and poor prognosis. However, it is not expressed in most nonlipogenic normal tissues. Thus, FASN is a desirable target for drug discovery. Although different FASN inhibitors have been identified, none has successfully moved into clinical use. In this study, using in silico screening of an FDA-approved drug database, we identified proton pump inhibitors (PPIs) as effective inhibitors of the thioesterase activity of human FASN. Further investigation showed that PPIs inhibited proliferation and induced apoptosis of cancer cells. Supplementation of palmitate, the end product of FASN catalysis, rescued cancer cells from PPI-induced cell death. These findings provide new evidence for the mechanism by which this FDA-approved class of compounds may be acting on cancer cells

New dual-mode orthogonal tunable fluorescence systems based on cucurbit[8]uril: White light, 3D printing, and anti-counterfeit applications

In this work, we have utilized a supramolecular approach to control emission, and generate white light and have applied the system to both 3D printing and counterfeiting applications. In particular, we report two new dual-mode orthogonal tunable fluorescence systems, A and B. System A is based on the fluorescent dyes perylene diimide (PDI-C6) and 7-hydroxycoumarin, which are incorporated into the main guest system, namely cucurbit[8]uril (Q[8]). This system can provide bright white emission and proved to be adaptable, whereby the emission can be easily changed via temperature control; a smart temperature control switch in the range of 30 °C to 100 °C was developed. System B is based on quinine sulfate with PDI-C6 and Q[8], and this system can provide white emission over a wide concentration range and it was applied to LED lamps. Such white emission also performs well in polymeric matrices and can be utilized for 3D printing, whilst solutions can be used for more practical applications, for example as anti-counterfeiting materials

The role of EGFR mutation as a prognostic factor in survival after diagnosis of brain metastasis in non-small cell lung cancer: A systematic review and meta-analysis

Abstract Background The brain is a common site for metastasis in non-small-cell lung cancer (NSCLC). This study was designed to evaluate the relationship between the mutational of the epidermal growth factor receptor (EGFR) and overall survival (OS) in NSCLC patients with brain metastases. Methods Searches were performed in PubMed, EmBase, and the Cochrane Library to identify studies evaluating the association of EGFR mutation with OS in NSCLC patients through September 2017. Results 4373 NSCLC patients with brain metastases in 18 studies were involved. Mutated EGFR associated with significantly improved OS compared with wild type. Subgroup analyses suggested that this relationship persisted in studies conducted in Eastern, with retrospective design, with sample size ≥500, mean age of patients ≥65.0 years, percentage male < 50.0%, percentage of patients receiving tyrosine kinase inhibitor ≥30.0%. Finally, although significant publication bias was observed using the Egger test, the results were not changed after adjustment using the trim and fill method. Conclusions This meta-analysis suggests that EGFR mutation is an important predictive factor linked to improved OS for NSCLC patients with brain metastases. It can serve as a useful index in the prognostic assessment of NSCLC patients with brain metastases

Heritable and Lineage-Specific Gene Knockdown in Zebrafish Embryo

BACKGROUND: Reduced expression of developmentally important genes and tumor suppressors due to haploinsufficiency or epigenetic suppression has been shown to contribute to the pathogenesis of various malignancies. However, methodology that allows spatio-temporally knockdown of gene expression in various model organisms such as zebrafish has not been well established, which largely limits the potential of zebrafish as a vertebrate model of human malignant disorders. PRINCIPAL FINDING: Here, we report that multiple copies of small hairpin RNA (shRNA) are expressed from a single transcript that mimics the natural microRNA-30e precursor (mir-shRNA). The mir-shRNA, when microinjected into zebrafish embryos, induced an efficient knockdown of two developmentally essential genes chordin and alpha-catenin in a dose-controllable fashion. Furthermore, we designed a novel cassette vector to simultaneously express an intronic mir-shRNA and a chimeric red fluorescent protein driven by lineage-specific promoter, which efficiently reduced the expression of a chromosomally integrated reporter gene and an endogenously expressed gata-1 gene in the developing erythroid progenitors and hemangioblasts, respectively. SIGNIFICANCE: This methodology provides an invaluable tool to knockdown developmental important genes in a tissue-specific manner or to establish animal models, in which the gene dosage is critically important in the pathogenesis of human disorders. The strategy should be also applicable to other model organisms