Temporal Query Answering in EL

Context-aware systems use data about their environment for adaptation at runtime, e.g., for optimization of power consumption or user experience. Ontology-based data access (OBDA) can be used to support the interpretation of the usually large amounts of data. OBDA augments query answering in databases by dropping the closed-world assumption (i.e., the data is not assumed to be complete any more) and by including domain knowledge provided by an ontology. We focus on a recently proposed temporalized query language that allows to combine conjunctive queries with the operators of the well-known propositional temporal logic LTL. In particular, we investigate temporalized OBDA w.r.t. ontologies in the DL EL, which allows for efficient reasoning and has been successfully applied in practice. We study both data and combined complexity of the query entailment problem

Temporal Query Answering in DL-Lite with Negation

Ontology-based query answering augments classical query answering in databases by adopting the open-world assumption and by including domain knowledge provided by an ontology. We investigate temporal query answering w.r.t. ontologies formulated in DL-Lite, a family of description logics that captures the conceptual features of relational databases and was tailored for efficient query answering. We consider a recently proposed temporal query language that combines conjunctive queries with the operators of propositional linear temporal logic (LTL). In particular, we consider negation in the ontology and query language, and study both data and combined complexity of query entailment

LTL over EL Axioms

Aus der Einleitung: Description Logics (DLs) [BCM+07] are popular knowledge representation formalisms, mainly because they are the basis of the standardized OWL 2 Direct Semantics, their expressiveness can be tailored to the application at hand, and many optimized reasoning systems are available

Reasoning with Temporal Properties over Axioms of DL-Lite

Recently, a lot of research has combined description logics (DLs) of the DL-Lite family with temporal formalisms. Such logics are proposed to be used for situation recognition and temporalized ontology-based data access. In this report, we consider DL-Lite-LTL, in which axioms formulated in a member of the DL-Lite family are combined using the operators of propositional linear-time temporal logic (LTL). We consider the satisfiability problem of this logic in the presence of so-called rigid symbols whose interpretation does not change over time. In contrast to more expressive temporalized DLs, the computational complexity of this problem is the same as for LTL, even w.r.t. rigid symbols

Transformers over Directed Acyclic Graphs

Transformer models have recently gained popularity in graph representation learning as they have the potential to learn complex relationships beyond the ones captured by regular graph neural networks. The main research question is how to inject the structural bias of graphs into the transformer architecture, and several proposals have been made for undirected molecular graphs and, recently, also for larger network graphs. In this paper, we study transformers over directed acyclic graphs (DAGs) and propose architecture adaptations tailored to DAGs: (1) An attention mechanism that is considerably more efficient than the regular quadratic complexity of transformers and at the same time faithfully captures the DAG structure, and (2) a positional encoding of the DAG's partial order, complementing the former. We rigorously evaluate our approach over various types of tasks, ranging from classifying source code graphs to nodes in citation networks, and show that it is effective in two important aspects: in making graph transformers generally outperform graph neural networks tailored to DAGs and in improving SOTA graph transformer performance in terms of both quality and efficiency

On Implementing Temporal Query Answering in DL-Lite

Ontology-based data access augments classical query answering over fact bases by adopting the open-world assumption and by including domain knowledge provided by an ontology. We implemented temporal query answering w.r.t. ontologies formulated in the Description Logic DL-Lite. Focusing on temporal conjunctive queries (TCQs), which combine conjunctive queries via the operators of propositional linear temporal logic, we regard three approaches for answering them: an iterative algorithm that considers all data available; a window-based algorithm; and a rewriting approach, which translates the TCQs to be answered into SQL queries. Since the relevant ontological knowledge is already encoded into the latter queries, they can be answered by a standard database system. Our evaluation especially shows that implementations of both the iterative and the window-based algorithm answer TCQs within a few milliseconds, and that the former achieves a constant performance, even if data is growing over time

Improving Self-supervised Molecular Representation Learning using Persistent Homology

Self-supervised learning (SSL) has great potential for molecular representation learning given the complexity of molecular graphs, the large amounts of unlabelled data available, the considerable cost of obtaining labels experimentally, and the hence often only small training datasets. The importance of the topic is reflected in the variety of paradigms and architectures that have been investigated recently. Yet the differences in performance seem often minor and are barely understood to date. In this paper, we study SSL based on persistent homology (PH), a mathematical tool for modeling topological features of data that persist across multiple scales. It has several unique features which particularly suit SSL, naturally offering: different views of the data, stability in terms of distance preservation, and the opportunity to flexibly incorporate domain knowledge. We (1) investigate an autoencoder, which shows the general representational power of PH, and (2) propose a contrastive loss that complements existing approaches. We rigorously evaluate our approach for molecular property prediction and demonstrate its particular features in improving the embedding space: after SSL, the representations are better and offer considerably more predictive power than the baselines over different probing tasks; our loss increases baseline performance, sometimes largely; and we often obtain substantial improvements over very small datasets, a common scenario in practice.Comment: NeurIPS 202

Temporal Query Answering w.r.t. DL-Lite-Ontologies

Ontology-based data access (OBDA) generalizes query answering in relational databases. It allows to query a database by using the language of an ontology, abstracting from the actual relations of the database. For ontologies formulated in Description Logics of the DL-Lite family, OBDA can be realized by rewriting the query into a classical first-order query, e.g. an SQL query, by compiling the information of the ontology into the query. The query is then answered using classical database techniques. In this report, we consider a temporal version of OBDA. We propose a temporal query language that combines a linear temporal logic with queries over DL-Litecore-ontologies. This language is well-suited for expressing temporal properties of dynamical systems and is useful in context-aware applications that need to detect specific situations. Using a first-order rewriting approach, we transform our temporal queries into queries over a temporal database. We then present three approaches to answering the resulting queries, all having different advantages and drawbacks.This revised version proves that the presented algorithm achieves a bounded history encoding