Using presence-absence data to establish reserve selection procedures that are robust to temporal species turnover

Previous studies suggest that a network of nature reserves with maximum efficiency (obtained by selecting the minimum area such that each species is represented once) is likely to be insufficient to maintain species in the network over time. Here, we test the performance of three selection strategies which require presence-absence data, two of them previously proposed (multiple representations and selecting an increasing percentage of each species' range) and a novel one based on selecting the site where each species has exhibited a higher permanence rate in the past. Multiple representations appear to be a safer strategy than selecting a percentage of range because the former gives priority to rarer species while the latter favours the most widespread. The most effective strategy was the one based on the permanence rate, indicating that the robustness of reserve networks can be improved by adopting reserve selection procedures that integrate information about the relative value of sites. This strategy was also very efficient, suggesting that the investment made in the monitoring schemes may be compensated for by a lower cost in reserve acquisition

The Globin Gene Repertoire of Lampreys: Convergent Evolution of Hemoglobin and Myoglobin in Jawed and Jawless Vertebrates

Agnathans (jawless vertebrates) occupy a key phylogenetic position for illuminating the evolution of vertebrate anatomy and physiology. Evaluation of the agnathan globin gene repertoire can thus aid efforts to reconstruct the origin and evolution of the globin genes of vertebrates, a superfamily that includes the well-known model proteins hemoglobin and myoglobin. Here, we report a comprehensive analysis of the genome of the sea lamprey (Petromyzon marinus) which revealed 23 intact globin genes and two hemoglobin pseudogenes. Analyses of the genome of the Arctic lamprey (Lethenteron camtschaticum) identified 18 full length and five partial globin gene sequences. The majority of the globin genes in both lamprey species correspond to the known agnathan hemoglobins. Both genomes harbor two copies of globin X, an ancient globin gene that has a broad phylogenetic distribution in the animal kingdom. Surprisingly, we found no evidence for an ortholog of neuroglobin in the lamprey genomes. Expression and phylogenetic analyses identified an ortholog of cytoglobin in the lampreys; in fact, our results indicate that cytoglobin is the only orthologous vertebrate-specific globin that has been retained in both gnathostomes and agnathans. Notably, we also found two globins that are highly expressed in the heart of P. marinus, thus representing functional myoglobins. Both genes have orthologs in L. camtschaticum. Phylogenetic analyses indicate that these heart-expressed globins are not orthologous to the myoglobins of jawed vertebrates (Gnathostomata), but originated independently within the agnathans. The agnathan myoglobin and hemoglobin proteins form a monophyletic group to the exclusion of functionally analogous myoglobins and hemoglobins of gnathostomes, indicating that specialized respiratory proteins for O2 transport in the blood and O2 storage in the striated muscles evolved independently in both lineages. This dual convergence of O2-transport and O2-storage proteins in agnathans and gnathostomes involved the convergent co-option of different precursor proteins in the ancestral globin repertoire of vertebrates

Ex-nihilo II: Examination Syllabi and the Sequencing of Cosmology Education

Cosmology education has become an integral part of modern physics courses. Directed by National Curricula, major UK examination boards have developed syllabi that contain explicit statements about the model of the Big Bang and the strong observational evidence that supports it. This work examines the similarities and differences in these specifications, addresses when cosmology could be taught within a physics course, what should be included in this teaching and in what sequence it should be taught at different levels.Comment: 9 pages. Accepted for publication in a special issue of Physics Educatio

Identification of Novel Fibrosis Modifiers by In Vivo siRNA Silencing.

Fibrotic diseases contribute to 45% of deaths in the industrialized world, and therefore a better understanding of the pathophysiological mechanisms underlying tissue fibrosis is sorely needed. We aimed to identify novel modifiers of tissue fibrosis expressed by myofibroblasts and their progenitors in their disease microenvironment through RNA silencing in vivo. We leveraged novel biology, targeting genes upregulated during liver and kidney fibrosis in this cell lineage, and employed small interfering RNA (siRNA)-formulated lipid nanoparticles technology to silence these genes in carbon-tetrachloride-induced liver fibrosis in mice. We identified five genes, Egr2, Atp1a2, Fkbp10, Fstl1, and Has2, which modified fibrogenesis based on their silencing, resulting in reduced Col1a1 mRNA levels and collagen accumulation in the liver. These genes fell into different groups based on the effects of their silencing on a transcriptional mini-array and histological outcomes. Silencing of Egr2 had the broadest effects in vivo and also reduced fibrogenic gene expression in a human fibroblast cell line. Prior to our study, Egr2, Atp1a2, and Fkbp10 had not been functionally validated in fibrosis in vivo. Thus, our results provide a major advance over the existing knowledge of fibrogenic pathways. Our study is the first example of a targeted siRNA assay to identify novel fibrosis modifiers in vivo

New Insights into the Age and Origin of Two Small Cretaceous Seamount Chains Proximal to the Northwestern Hawaiian Ridge

The Northwestern Hawaiian Ridge is an age-progressive volcanic chain sourced from the Hawaiian mantle plume. Proximal to the Northwestern Hawaiian Ridge are several clusters of smaller seamounts and ridges with limited age constraints and unknown geodynamic origins. This study presents new bathymetric data and 40Ar/39Ar age determinations from lava flow samples recovered by remotely operated vehicle (ROV) from two east–west-trending chains of seamounts that lie north of the Pūhāhonu and Mokumanamana volcanoes. The previously unexplored Naifeh Chain (28°48′N,167°48′W) and Plumeria Chain (25°36′N, 164°35′W) contain five volcanic structures each, including three guyots in the Naifeh Chain. New 40Ar/39Ar age determinations indicate that the Naifeh Chain formed ca. 88 Ma and the Plumeria Chain ca. 85 Ma. The Cretaceous ages, coupled with a perpendicular orientation of the seamounts relative to absolute Pacific plate motion at that time, eliminate either a Miocene Hawaiian volcanic arch or Cretaceous mantle-plume origin. The seamounts lie on oceanic crust that is modeled to be 10–15 Ma older than the corresponding seamounts. Here, two models are put forth to explain the origin of these enigmatic seamount chains as well as the similar nearby Mendelssohn Seamounts. (1) Diffuse lithospheric extension results in the formation of these seamounts until the initiation of the Kula-Pacific spreading center in the north at 84–79 Ma, which alleviates the tension. (2) Shear-driven upwelling of enriched mantle material beneath young oceanic lithosphere results in an age-progressive seamount track that is approximately perpendicular to the spreading ridge. Here we show that all sampled seamounts proximal to the Northwestern Hawaiian Ridge are intraplate in nature, but their formations can be attributed to both plume and plate processes