Somatic Mutational Landscape of Splicing Factor Genes and Their Functional Consequences across 33 Cancer Types

Hotspot mutations in splicing factor genes have been recently reported at high frequency in hematological malignancies, suggesting the importance of RNA splicing in cancer. We analyzed whole-exome sequencing data across 33 tumor types in The Cancer Genome Atlas (TCGA), and we identified 119 splicing factor genes with significant non-silent mutation patterns, including mutation over-representation, recurrent loss of function (tumor suppressor-like), or hotspot mutation profile (oncogene-like). Furthermore, RNA sequencing analysis revealed altered splicing events associated with selected splicing factor mutations. In addition, we were able to identify common gene pathway profiles associated with the presence of these mutations. Our analysis suggests that somatic alteration of genes involved in the RNA-splicing process is common in cancer and may represent an underappreciated hallmark of tumorigenesis

Epidemiological investigation and analysis of Clostridium perfringens food poisoning caused by food delivery

Objective To find out the suspicious food, pathogenic factors and risk factors of a foodborne disease outbreak in a factory, and to discuss the problems exposed in the investigation of the incident, so as to provide reference for the prevention, control and investigation of similar incidents in the future. Methods A case was defined as the onset of abdominal pain or diarrhea (≥3 times/24 hours) or vomiting in a person who worked in M factory from March 3 to March 4 in 2019. Case interviews and retrospective research was carried out using descriptive and analytical epidemics pathological method. Stool specimens of the cases, leftover food and related environmental samples were gathered for pathogen isolation and toxin gene detection using polymerase chain reaction (PCR). Results 106 cases were identified with a attack rate of 73.6% (106/144). The symptoms were diarrhea (78.3%, 83/106), abdominal cramps (78.3%, 83/106), abdominal gas pains (9.4%, 10/106), and no fever. The epidemic curve showed a point source exposure pattern. The median incubation time was 10 hours (range: 2-22 h). Illness were associated with three food items of the lunch on March 3 in 2019 by univariate analysis and Logistic regression analysis: braised fish pieces [relative risk (RR)=1.55, 95% confidence interval (95%CI): 1.29-1.85], pork stir-fried with garlic sprouts (RR=1.26, 95%CI: 1.01-1.57) and duck blood stir-fried with pickles (RR=1.47, 95%CI: 1.16-1.87). Alpha toxin and enterotoxin CPE genes were positive and beta toxin genes was negative in the Clostridium perfringens strain isolated in anal swabs of three patients, three environmental samples and two leftover food samples. There were possible bacterial contamination and reproduction in the processing and preparation of enterprise D, which delivered food. Conclusion This incident was caused by the food poisoning of Clostridium perfringens caused by the consumption of a meal provided by a catering company. After the meal was delivered, it should be cooled quickly and stored at low temperature. If it cannot be eaten immediately, it should be heated sufficiently before eating

A Survey of Established Veterinary Clinical Skills Laboratories from Europe and North America:Present Practices and Recent Developments

Hierarchical clustering analysis of all dysregulated genes. (TIF 11970 kb

Ambaixada a Brussel·les.

Hotspot mutations in splicing factor genes have been recently reported at high frequency in hematological malignancies, suggesting the importance of RNA splicing in cancer. We analyzed whole-exome sequencing data across 33 tumor types in The Cancer Genome Atlas (TCGA), and we identified 119 splicing factor genes with significant non-silent mutation patterns, including mutation over-representation, recurrent loss of function (tumor suppressor-like), or hotspot mutation profile (oncogene-like). Furthermore, RNA sequencing analysis revealed altered splicing events associated with selected splicing factor mutations. In addition, we were able to identify common gene pathway profiles associated with the presence of these mutations. Our analysis suggests that somatic alteration of genes involved in the RNA-splicing process is common in cancer and may represent an underappreciated hallmark of tumorigenesis

In situ atomic scale mechanisms of strain-induced twin boundary shear to high angle grain boundary in nanocrystalline Pt

Twin boundary can both strengthen and soften nanocrystalline metals and has been an important path for improving the strength and ductility of nano materials. Here, using in-lab developed double-tilt tensile stage in the transmission electron microscope, the atomic scale twin boundary shearing process was in situ observed in a twin-structured nanocrystalline Pt. It was revealed that the twin boundary shear was resulted from partial dislocation emissions on the intersected {111} planes, which accommodate as large as 47% shear strain. It is uncovered that the partial dislocations nucleated and glided on the two intersecting {111} slip planes lead to a transition of the original symmetric tilt ∑3/(111) coherent twin boundary into a symmetric tilt ∑9/(114) high angle grain boundary. These results provide insight of twin boundary strengthening mechanisms for accommodating plasticity strains in nanocrystalline metals

Somatic Mutational Landscape of Splicing Factor Genes and Their Functional Consequences across 33 Cancer Types

Hotspot mutations in splicing factor genes have been recently reported at high frequency in hematological malignancies, suggesting the importance of RNA splicing in cancer. We analyzed whole-exome sequencing data across 33 tumor types in The Cancer Genome Atlas (TCGA), and we identified 119 splicing factor genes with significant non-silent mutation patterns, including mutation over-representation, recurrent loss of function (tumor suppressor-like), or hotspot mutation profile (oncogene-like). Furthermore, RNA sequencing analysis revealed altered splicing events associated with selected splicing factor mutations. In addition, we were able to identify common gene pathway profiles associated with the presence of these mutations. Our analysis suggests that somatic alteration of genes involved in the RNA-splicing process is common in cancer and may represent an underappreciated hallmark of tumorigenesis

Conduction band electron relaxation and spin relaxation dynamics in CdZnTe alloy

Conduction band electron relaxation and spin relaxation dynamics in Cd0.96Zn0.04Te alloy are investigated using time-resolved pump-probe spectroscopy. The measured linearly polarization pump-probe spectroscopy demonstrates the presence of a fast process and a slow process, both of which indicate electron trapping and recombination at the defect/impurity level. The time constants of the fast process are within the range of 3.1 to 4.9 ps, and those of the slow process are within the range of 16.1 to 18.1 ps. During the ultrafast thermalization process in the first picosecond, an oscillating signal that results from the band gap renormalization (BGR) effect is found. The D’yakonov-Perel’ (DP) mechanism dominates the spin relaxation process, and the spin relaxation slows down with the incorporation of Zn, because of the decrease of spin-orbit splitting energy and enhancement of electron-impurity scattering

Multi-Scale Numerical Assessments of Urban Wind Resource Using Coupled WRF-BEP and RANS Simulation: A Case Study

Urban wind resource assessments (WRAs) contribute to the effective exploitation of wind energy and thus are of significant importance to the sustainable development of cities. To improve the simulation accuracy of urban wind flow with high spatial resolution, this study implemented a multi-scale numerical assessment of the wind power potential in a highly-urbanized region with realistic terrain conditions by integrating the Reynolds-averaged Navier-Stokes (RANS) equations into the Weather Research and Forecasting (WRF) model with Building Effect Parameterization (WRF-BEP). The sensitivity analyses are first conducted to obtain an appropriate combination of physical parameterization schemes in the WRF-BEP model. Then, the wind tunnel tests are performed to validate the computational accuracy of urban wind flow using the RANS equations. Based on a close examination of the urban wind flow resulting from the coupled WRF-BEP and RANS simulations, the integration of micro-wind turbines into the building skin is not recommended in the highly-urbanized region. Furthermore, five optimum roof installation locations with low turbulence intensities (smaller than 18%) and high wind power densities (approximately 220 W/m2, 260 W/m2, 270 W/m2, 300 W/m2 and 400 W/m2, respectively) are identified. Finally, the important effects of the terrain conditions, planetary boundary layer (PBL) parameterization schemes and turbulence models on WRAs are discussed. The results of WRAs in this multi-scale numerical case study presented a systemic approach to effectively determine the installation locations of micro-wind turbines that possess the greatest potential to harness wind energy in a realistic highly-urbanized area

In-situ observation of cooperative grain boundary sliding and migration in the nano-twinned nanocrystalline-Au thin-films

Using our homemade tensile device inside a transmission electron microscope, we in-situ investigated the deformation behaviours of the nano-twinned nanocrystalline Au thin-films with thickness of ~15 nm and average grain size of ~16 nm. Our extensive in-situ observation studies reveal that the deformation of the nano-twinned nanocrystalline Au thin-film was dominated by the cooperative grain boundary sliding and migration, which were rarely observed in the previous reports. Meanwhile, our statistic shows that the nano-twins tended to promote further stress-driven grain growth, and the promotion became more remarkable for the nano-twinned grains that were located at the crack tips