Screening and characterization of Lactobacillus strains producing large amounts of exopolysaccharides

A total of 182 Lactobacillus strains were screened for production of extracellular polysaccharides (EPS) by a new method: growth in liquid media with high sugar concentrations. Sixty EPS-positive strains were identified; 17 strains produced more than 100 mg/l soluble EPS. Sucrose was an excellent substrate for abundant EPS synthesis. The ability to produce glucans appears to be widespread in the genus Lactobacillus. The monosaccharide composition of EPS produced by Lactobacillus reuteri strain LB 121 varied with the growth conditions (solid compared to liquid medium) and the sugar substrates (sucrose or raffinose) supplied in the medium. Strain LB 121 produced both a glucan and a fructan on sucrose, but only a fructan on raffinose. This is the first report of fructan production by a Lactobacillus species. EPS production increased with increasing sucrose concentrations and involved extracellular sucrase-type enzymes.

Modelling global livestock diversity : a fuzzy cognitive mapping approach

For modelling global trends in agrobiodiversity better insight in the relationship between drivers (and related pressures) and agrobiodiversity is needed. In a previous study of the authors a number of indicators for genetic diversity were proposed as being suitable for modelling. In this working document it was investigated if a global agrobiodiversity map for livestock could be produced based on one of these earlier suggested indicators. The Global Domestic Animal Diversity Information System (DAD-IS) was interrogated for one livestock species (cattle) to investigate whether sufficient data of good quality is available to produce such a global map. Additionally, a fuzzy cognitive mapping approach was used to make a qualitative description of livestock diversity in relation to drivers of change. In the FCM 21 factors were identified by the workshop participants to describe the livestock diversity system, of which 10 appeared to be most influential. For these most important factors a list of relevant (proxy) indicators with their potential for use was suggested. These suggested indicators could be the basis for further research in which the so-called archetype methodology could be used to get insight in hotspots of livestock diversity

An alternative approach to produce versatile retinal organoids with accelerated ganglion cell development

Genetically complex ocular neuropathies, such as glaucoma, are a major cause of visual impairment worldwide. There is a growing need to generate suitable human representative in vitro and in vivo models, as there is no effective treatment available once damage has occured. Retinal organoids are increasingly being used for experimental gene therapy, stem cell replacement therapy and small molecule therapy. There are multiple protocols for the development of retinal organoids available, however, one potential drawback of the current methods is that the organoids can take between 6 weeks and 12 months on average to develop and mature, depending on the specific cell type wanted. Here, we describe and characterise a protocol focused on the generation of retinal ganglion cells within an accelerated four week timeframe without any external small molecules or growth factors. Subsequent long term cultures yield fully differentiated organoids displaying all major retinal cell types. RPE, Horizontal, Amacrine and Photoreceptors cells were generated using external factors to maintain lamination.</p

Multiple Rieske/cytb complexes in a single organism

AbstractMost organisms contain a single Rieske/cytb complex. This enzyme can be integrated in any respiratory or photosynthetic electron transfer chain that is quinone-based and sufficiently energy rich to allow for the turnover of three enzymes — a quinol reductase, a Rieske/cytb complex and a terminal oxidase. Despite this universal usability of the enzyme a variety of phylogenetically distant organisms have multiple copies thereof and no reason for this redundancy is obvious. In this review we present an overview of the distribution of multiple copies among species and describe their properties from the scarce experimental results, analysis of their amino acid sequences and genomic context. We discuss the predicted redox properties of the Rieske cluster in relation to the nature of the pool quinone. It appears that acidophilic iron-oxidizing bacteria specialized one of their two copies for reverse electron transfer, archaeal Thermoprotei adapted their three copies to the interaction with different oxidases and several, phylogenetically unrelated species imported a second complex with a putative heme ci that may confer some yet to be determined properties to the complex. These hypothesis and all the more the so far completely unexplained cases call for further studies and we put forward a number of suggestions for future research that we hope to be stimulating for the field. This article is part of a Special Issue entitled: Respiratory complex III and related bc complexes

Effects of 2010 Hurricane Earl amidst geologic evidence for greater overwash at Anegada, British Virgin Islands

© The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Advances in Geosciences 38 (2014): 21-30, doi:10.5194/adgeo-38-21-2014.A post-hurricane survey of a Caribbean island affords comparisons with geologic evidence for greater overwash at the same place. This comparison, though of limited application to other places, helps calibrate coastal geology for assessment of earthquake and tsunami potential along the Antilles Subduction Zone. The surveyed island, Anegada, is 120 km south of the Puerto Rico Trench and is near the paths of hurricanes Donna (1960) and Earl (2010), which were at or near category 4 when at closest approach. The survey focused on Earl's geologic effects, related them to the surge from Hurricane Donna, and compared them further with erosional and depositional signs of southward overwash from the Atlantic Ocean that dates to 1200–1450 AD and to 1650–1800 AD. The main finding is that the geologic effects of these earlier events dwarf those of the recent hurricanes. Hurricane Earl's geologic effects at Anegada, observed mainly in 2011, were limited to wrack deposition along many of the island's shores and salt ponds, accretion of small washover (spillover) fans on the south shore, and the suspension and deposition of microbial material from interior salt ponds. Earl's most widespread deposit at Anegada, the microbial detritus, was abundantly juxtaposed with evidence for catastrophic overwash in prior centuries. The microbial detritus formed an extensive coating up to 2 cm thick that extended into breaches in beach-ridge plains of the island's north shore, onto playas that are underlain by a sand-and-shell sheet that extends as much as 1.5 km southward from the north shore, and among southward-strewn limestone boulders pendant to outcrops as much as 1 km inland. Earl's spillover fans also contrast with a sand-and-shell sheet, which was dated previously to 1650–1800, by being limited to the island's south shore and by extending inland a few tens of meters at most. These findings complement those reported in this issue by Michaela Spiske and Robert Halley (Spiske and Halley, 2014), who studied a coral-rubble ridge that lines part of Anegada's north shore. Spiske and Halley attribute the ridge to storms that were larger than Earl. But they contrast the ridge with coral boulders that were scattered hundreds of meters inland by overwash in 1200–1450

Schottky barrier formation at amorphous-crystalline interfaces of GeSb phase change materials

The electrical properties of amorphous-crystalline interfaces in phase change materials, which are important for rewritable optical data storage and for random access memory devices, have been investigated by surface scanning potential microscopy. Analysis of GeSb systems indicates that the surface potential of the crystalline phase is similar to 30-60 mV higher than that of the amorphous phase. This potential asymmetry is explained qualitatively by the presence of a Schottky barrier at the amorphous-crystalline interface and supported also by quantitative Schottky model calculations. (C) 2012 American Institute of Physics. [http://dx.doi.org/10.1063/1.3691179

Genome-wide CNV investigation suggests a role for cadherin, Wnt, and p53 pathways in primary open-angle glaucoma

BACKGROUND: To investigate whether copy number variations (CNVs) are implicated in molecular mechanisms underlying primary open-angle glaucoma (POAG), we used genotype data of POAG individuals and healthy controls from two case-control studies, AGS (n = 278) and GLGS-UGLI (n = 1292). PennCNV, QuantiSNP, and cnvPartition programs were used to detect CNV. Stringent quality controls at both sample and marker levels were applied. The identified CNVs were intersected in CNV region (CNVR). After, we performed burden analysis, CNV-genome-wide association analysis, gene set overrepresentation and pathway analysis. In addition, in human eye tissues we assessed the expression of the genes lying within significant CNVRs. RESULTS: We reported a statistically significant greater burden of CNVs in POAG cases compared to controls (p-value = 0,007). In common between the two cohorts, CNV-association analysis identified statistically significant CNVRs associated with POAG that span 11 genes (APC, BRCA2, COL3A1, HLA-DRB1, HLA-DRB5, HLA-DRB6, MFSD8, NIPBL, SCN1A, SDHB, and ZDHHC11). Functional annotation and pathway analysis suggested the involvement of cadherin, Wnt signalling, and p53 pathways. CONCLUSIONS: Our data suggest that CNVs may have a role in the susceptibility of POAG and they can reveal more information on the mechanism behind this disease. Additional genetic and functional studies are warranted to ascertain the contribution of CNVs in POAG. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12864-021-07846-1

Tunable wettability of polymer films by partial engulfment of nanoparticles

A series of poly(methyl methacrylate) (PMMA) surfaces decorated by Cu nanoparticles (NP) with gradually varied morphology were prepared by high-pressure CO2 treatment at various time spans. Combining the characterizations of transmission electron microscopy (TEM) and atomic force microscopy (AFM), an accurate three-dimensional view of the morphology of the surfaces was presented. Subsequently, the wettability of the surfaces decreases near linearly with the increase of the apparent height of the decorating NPs in both static (static contact angle) and dynamic (contact angle hysteresis) aspects. The observed tendency contradicts to the Wenzel or Cassie-Baxter model and is explained by the contribution of nanomeniscus formed between the decorating NP and the flat substrate. The capillary pressure from this meniscus is negative and results in the increase of the contact angle with the apparent height (H-N) of the Cu NPs decorating the PMMA surface. In addition, the effect of the coverage (C-N) by NPs on the wettability can be explained on the same basis. Our experiment demonstrates the important influence of the nanomeniscus on the wettability, which is usually not taken into account. The results in this work provide a comprehensive understanding of how nanostructure affects the wettability of the decorated surfaces and shed light on how to obtain certain wettability through nanostructuring of the surface morphology

Control surface wettability with nanoparticles from phase-change materials

The wetting state of surfaces can be controlled physically from the highly hydrophobic to hydrophilic states using the amorphous-to-crystalline phase transition of Ge2Sb2Te5 (GST) nanoparticles as surfactant. Indeed, contact angle measurements show that by increasing the surface coverage of the amorphous nanoparticles the contact angle increases to high values ∼140°, close to the superhydrophobic limit. However, for crystallized nanoparticle assemblies after thermal annealing, the contact angle decreases down to ∼40° (significantly lower than that of the bare substrate) leading to an increased hydrophilicity. Moreover, the wettability changes are also manifested on the capillary adhesion forces by being stronger for the crystallized GST state

Gene expression-based comparison of the human secretory neuroepithelia of the brain choroid plexus and the ocular ciliary body:potential implications for glaucoma

BACKGROUND: The neuroepithelia of the choroid plexus (CP) in the brain and the ciliary body (CB) of the eye have common embryological origins and share similar micro-structure and functions. The CP epithelium (CPE) and the non-pigmented epithelium (NPE) of the CB produce the cerebrospinal fluid (CSF) and the aqueous humor (AH) respectively. Production and outflow of the CSF determine the intracranial pressure (ICP); production and outflow of the AH determine the intraocular pressure (IOP). Together, the IOP and ICP determine the translaminar pressure on the optic disc which may be involved in the pathophysiology of primary open angle glaucoma (POAG). The aim of this study was to compare the molecular machinery of the secretory neuroepithelia of the CP and CB (CPE versus NPE) and to determine their potential role in POAG. METHODS: We compared the transcriptomes and functional annotations of healthy human CPE and NPE. Microarray and bioinformatic studies were performed using an Agilent platform and the Ingenuity Knowledge Database (IPA). RESULTS: Based on gene expression profiles, we found many similar functions for the CPE and NPE including molecular transport, neurological disease processes, and immunological functions. With commonly-used selection criteria (fold-change > 2.5, p-value < 0.05), 14% of the genes were expressed significantly differently between CPE and NPE. When we used stricter selection criteria (fold-change > 5, p-value < 0.001), still 4.5% of the genes were expressed differently, which yielded specific functions for the CPE (ciliary movement and angiogenesis/hematopoiesis) and for the NPE (neurodevelopmental properties). Apart from a few exceptions (e.g. SLC12A2, SLC4A4, SLC4A10, KCNA5, and SCN4B), all ion transport protein coding genes involved in CSF and AH production had similar expression profiles in CPE and NPE. Three POAG disease genes were expressed significantly higher in the CPE than the NPE, namely CDH1, CDKN2B and SIX1. CONCLUSIONS: The transcriptomes of the CPE and NPE were less similar than we previously anticipated. High expression of CSF/AH production genes and candidate POAG disease genes in the CPE and NPE suggest that both might be involved in POAG