The structure of the UDP-Glc/GlcNAc 4-epimerase from the human pathogen Campylobacter jejuni

Worldwide, the food-born pathogen Campylobacter jejuni is the leading bacterial source of human gastroenteritis. C. jejuni produces a variety of diverse cell-surface carbohydrates that are essential for pathogenicity. A critical component of these oligo- and polysaccharides is the sugar N-acetylgalactosamine (GalNAc). The sole source of this sugar is the epimerization of UDP-N-acetylglucosamine (GlcNAc), a reaction catalyzed by the enzyme UDP-GlcNAc 4-epimerase (Gne). This enzyme is unique among known bacterial epimerases in that it also catalyzes the equivalent reaction with the non-N-acetylated sugars. Understanding how CjGne catalyzes these various interconversions is critical to designing novel inhibitors of this enzyme. Here, to further the mechanistic understanding we present a 2.0Å structure of CjGne with its NAD⁺ co-factor bound. Based on novel features found in the structure we perform a variety of biochemical studies to probe the mechanism and compare these results to another bifunctional epimerase, human GalE. We further show that ebselen, previously identified for inhibition of HsGalE, is active against CjGne, suggesting a route for antibiotic development

Observation of domain wall bimerons in chiral magnets

Topological defects embedded in or combined with domain walls have been proposed in various systems, some of which are referred to as domain wall skyrmions or domain wall bimerons. However, the experimental observation of such topological defects remains an ongoing challenge. Here, using Lorentz transmission electron microscopy, we report the experimental discovery of domain wall bimerons in chiral magnet Co-Zn-Mn(110) thin films. By applying a magnetic field, multidomain structures develop, and simultaneously, chained and isolated bimerons arise as the localized state between the domains with the opposite in-plane components of net magnetization. The multidomain formation is attributed to magnetic anisotropy and dipolar interaction, and domain wall bimerons are stabilized by the Dzyaloshinskii-Moriya interaction. In addition, micromagnetic simulations show that domain wall bimerons appear for a wide range of conditions in chiral magnets with cubic magnetic anisotropy. Our results promote further study in various fields of physics.Comment: 30 pages, 10 figures (including Supplementary Materials

Synthesis, characterization, and its PL dynamics of colloidal type II CdTe/CdSe nanocrystals

We describe our improved synthesis and optical properties of high quality type II CdTe/CdSe nanocrystals (NCs). Specifically, clear shell-thickness dependences have been observed in the absorption and photoluminescence (PL) spectra and PL decay profiles as well. The magnitude of the lowest absorption band decreases drastically with large redshift as the shell thickness increases. The origin will be discussed on the bases of the model where the spatial configuration of the lowest electron-hole pair in the NCs changes from that of type I to type II as the shell thickness increases. As for the PL lifetime of the lowest electron-hole excitations, substantial increase is observed with increasing shell thickness. This can also be understood by considering the spatial configuration; spatial overlap between electron and hole wavefunctions decreases with increasing shell thickness, thus the lifetime increases. As for the NCs with extremely thin shell (∼1 ML; 1 ML = 0.35 nm), the PL lifetime seems much longer than expected. This suggests that the thin shells seem imperfect and work rather a kind of trap sites than layers

Synthesis, characterization, and its PL dynamics of colloidal type II CdTe/CdSe nanocrystals

We describe our improved synthesis and optical properties of high quality type II CdTe/CdSe nanocrystals (NCs). Specifically, clear shell-thickness dependences have been observed in the absorption and photoluminescence (PL) spectra and PL decay profiles as well. The magnitude of the lowest absorption band decreases drastically with large redshift as the shell thickness increases. The origin will be discussed on the bases of the model where the spatial configuration of the lowest electron-hole pair in the NCs changes from that of type I to type II as the shell thickness increases. As for the PL lifetime of the lowest electron-hole excitations, substantial increase is observed with increasing shell thickness. This can also be understood by considering the spatial configuration; spatial overlap between electron and hole wavefunctions decreases with increasing shell thickness, thus the lifetime increases. As for the NCs with extremely thin shell (∼1 ML; 1 ML = 0.35 nm), the PL lifetime seems much longer than expected. This suggests that the thin shells seem imperfect and work rather a kind of trap sites than layers

Host jumping onto close relatives and across kingdoms by Tyrannicordyceps (Clavicipitaceae) gen. nov. and Ustilaginoidea_(Clavicipitaceae)

Premise of study: This research seeks to advance understanding of conditions allowing movement of fungal pathogens among hosts. The family Clavicipitaceae contains fungal pathogens exploiting hosts across three kingdoms of life in a pattern that features multiple interkingdom host shifts among plants, animals, and fungi. The tribe Ustilaginoideae potentially represents a third origin of plant pathogenesis, although these species remain understudied. Fungal pathogens that cause ergot are linked morphologically with Clavicipitaceae, but are not yet included in phylogenetic studies. The placement of Ustilaginoideae and ergot pathogens will allow differentiation between the host habitat and host relatedness hypotheses as mechanisms of phylogenetic diversification of Clavicipitaceae. • Methods: A multigene data set was assembled for Clavicipitaceae to test phylogenetic placement and ancestral character-state reconstructions for Ustilaginoidea virens and U. dichromonae as well as the ergot mycoparasite Cordyceps fratricida. Microscopic morphological observations of sexual and asexual states were also performed. • Key results: Phylogenetic placement of U. virens and U. dichromonae represents a third acquisition of the plant pathogenic lifestyle in Clavicipitaceae. Cordyceps fratricida was also placed in Clavicipitaceae and recognized as a new genus Tyrannicordyceps. Ancestral character state reconstructions indicate initially infecting hemipteran insect hosts facilitates subsequent changes to a plant pathogenic lifestyle. The ancestor of T. fratricida is inferred to have jumped from grasses to pathogens of grasses. • Conclusions: The host habitat hypothesis best explains the dynamic evolution of host affiliations seen in Clavicipitaceae and throughout Hypocreales. Co-occurrence in the same habitat has allowed for host shifts from animals to plants, and from plants to fungi.Keywords: Clavicipitaceae, pathogen, host association, Villosiclava, anamorph-teleomorph connection, evolution, adelphoparasit

Successful Percutaneous Renal Artery Angioplasty and Stenting for Acute Oliguric Renal Failure in a Solitary Functioning Kidney Caused by Takayasu's Arteritis

Takayasu's arteritis (TA) is a nonspecific, chronic and stenotic panarteritis which usually involves the aorta and its major branches. Corticosteroid and immunosuppressants are recommended to manage the acute inflammatory phase, but their long term benefits are uncertain. Blood pressure (BP) control during the chronic phase of TA is essential to preserve renal function, which is associated with the patient's long-term prognosis and survival. Revascularization in organ damaging arterial stenosis with percutaneous angioplasty (PTA)/stenting or bypass surgery have been accepted as established treatment options in chronic complicated phase of TA. We present a case of a 31-year-old female patient with a two-day history of sudden onset oliguria and generalized edema whose acute oliguric renal failure was successfully reversed following PTA and stenting in a solitary functioning kidney with critical renal artery stenosis (RAS) caused by TA

Theory of disk accretion onto supermassive black holes

Accretion onto supermassive black holes produces both the dramatic phenomena associated with active galactic nuclei and the underwhelming displays seen in the Galactic Center and most other nearby galaxies. I review selected aspects of the current theoretical understanding of black hole accretion, emphasizing the role of magnetohydrodynamic turbulence and gravitational instabilities in driving the actual accretion and the importance of the efficacy of cooling in determining the structure and observational appearance of the accretion flow. Ongoing investigations into the dynamics of the plunging region, the origin of variability in the accretion process, and the evolution of warped, twisted, or eccentric disks are summarized.Comment: Mostly introductory review, to appear in "Supermassive black holes in the distant Universe", ed. A.J. Barger, Kluwer Academic Publishers, in pres

A Case of Sparganosis That Presented as a Recurrent Pericardial Effusion

Sparganosis is caused by a larval tapeworm of the genus Spirometra, which commonly invades subcutaneous tissue, but less frequently invades muscle, intestines, spinal cord, and the peritoneopleural cavity. The authors managed a female patient who presented with a recurrent pericardiopleural effusion and peripheral eosinophilia. The anti-sparganum-specific IgG serum level was significantly higher than normal control levels. In this patient, sparganosis was caused by the ingestion of raw frogs in an effort to control her thyroid disease. The recurrent pericardiopleural effusion and peripheral eosinophilia were controlled by 3 consecutive doses of praziquantel (75 mg/kg/day). The patient is doing well 4 years after presentation. Sparganosis should be considered a rare, but possible cause of recurrent pericardial effusion and peripheral eosinophilia. Immunoserologic testing using enzyme linked immunosorbent assays can be helpful in diagnosing human sparganosis, especially in cases without a subcutaneous lump or mass. Praziquantel is an alternative treatment for sparganosis in surgically-unresectable cases