Non-invasive age estimation based on faecal DNA using methylation-sensitive high-resolution melting for Indo-Pacific bottlenose dolphins

野生イルカのうんちから年齢を推定 --野生水生動物の糞から抽出したDNAのエピジェネティッククロックを用いた年齢推定に世界で初めて成功--. 京都大学プレスリリース. 2023-12-18.Age is necessary information for the study of life history of wild animals. A general method to estimate the age of odontocetes is counting dental growth layer groups (GLGs). However, this method is highly invasive as it requires the capture and handling of individuals to collect their teeth. Recently, the development of DNA-based age estimation methods has been actively studied as an alternative to such invasive methods, of which many have relied on used biopsy samples. However, if DNA-based age estimation can be developed from faecal samples, age estimation can be performed entirely non-invasively. We developed an age estimation model using the methylation rate of two gene regions, GRIA2 and CDKN2A, measured through methylation-sensitive high-resolution melting (MS-HRM) from faecal samples of wild Indo-Pacific bottlenose dolphins (Tursiops aduncus). The age of individuals was known through conducting longitudinal individual identification surveys underwater. Methylation rates were quantified from 36 samples collected from 30 individuals. Both gene regions showed a significant correlation between age and methylation rate. The age estimation model was constructed based on the methylation rates of both genes which achieved sufficient accuracy (after LOOCV: MAE = 5.08, R² = 0.33) for the ecological studies of the Indo-Pacific bottlenose dolphins, with a lifespan of 40–50 years. This is the first study to report the use of non-invasive faecal samples to estimate the age of marine mammals

Captive Bottlenose Dolphins (Tursiops truncatus) Spontaneously Using Water Flow to Manipulate Objects

Several terrestrial animals and delphinids manipulate objects in a tactile manner, using parts of their bodies, such as their mouths or hands. In this paper, we report that bottlenose dolphins (Tursiops truncatus) manipulate objects not by direct bodily contact, but by spontaneous water flow. Three of four dolphins at Suma Aqualife Park performed object manipulation with food. The typical sequence of object manipulation consisted of a three step procedure. First, the dolphins released the object from the sides of their mouths while assuming a head-down posture near the floor. They then manipulated the object around their mouths and caught it. Finally, they ceased to engage in their head-down posture and started to swim. When the dolphins moved the object, they used the water current in the pool or moved their head. These results showed that dolphins manipulate objects using movements that do not directly involve contact between a body part and the object. In the event the dolphins dropped the object on the floor, they lifted it by making water flow in one of three methods: opening and closing their mouths repeatedly, moving their heads lengthwise, or making circular head motions. This result suggests that bottlenose dolphins spontaneously change their environment to manipulate objects. The reason why aquatic animals like dolphins do object manipulation by changing their environment but terrestrial animals do not may be that the viscosity of the aquatic environment is much higher than it is in terrestrial environments. This is the first report thus far of any non-human mammal engaging in object manipulation using several methods to change their environment

セイヤク ジョウケン カラ ミタ ハクジラ アモク ノ コミュニケーションオン ノ デザイン

京都大学0048新制・課程博士博士(理学)甲第11359号理博第2917号新制||理||1435(附属図書館)23002UT51-2005-D110京都大学大学院理学研究科生物科学専攻(主査)教授 堀 道雄, 教授 山極 壽一, 助教授 曽田 貞滋学位規則第4条第1項該当Doctor of ScienceKyoto UniversityDA

Evolution of Communication Sounds in Odontocetes: A Review

The evolutional pathway of communication sounds (i.e., whistles) in odontocetes is reviewed using recent acoustic and phylogenetic studies. The common ancestor of Ziphiidae, Inioidea, and Delphinoidea acquired the ability to whistle in the early Oligocene. Subsequently, Pontoporiidae, Phocoenidae, and the genus Cephalorhynchus lost the ability to whistle and evolved narrow-band high-frequency (NBHF) clicks. I hypothesize that sexual selection based on acoustic signaling contributed to the evolution of whistle. However, group size cannot be excluded as the reason for whistle emergence. The event of whistle loss and replacement with NBHF clicks occurred on three independent occasions after killer whale divergence, through the reconstruction of sound-producing organs. Species with whistle loss may use alternative methods to compensate for whistle information, such as tactile communication. Further research on acoustic communication by Ziphiidae, Inioidea, Monodontidae, and the genus Cephalorhynchus is essential to clarify the evolutional pathway of odontocete whistles

Exchange of “signature” calls in captive belugas (Delphinapterus leucas)

Belugas (Delphinapterus leucas) produce echolocation clicks, burst pulses, and whistles. The sounds of 3 captive belugas were recorded using 2 hydrophones at the Port of Nagoya Public Aquarium. There were stable individual differences in the pulse patterning of one type of pulsed sounds (PS1 call), suggesting that belugas use these as “signature” calls. Eighty-eight percent of PS1 calls initiated PS1 calls from other animals within 1 s. PS1 calls repeated by the same individual occurred primarily when other belugas did not respond within 1 s of the first call. Belugas delayed successive PS1 calls when other belugas responded with a PS1 call within 1 s. There was no clear temporal pattern for whistles. It appears that the time limit for responding to calls is 1 s after the initial call. If other individuals do not respond to the PS1 call of a beluga within 1 s, belugas tend to repeat the call and wait for a response. The results of this study suggest that the belugas exchange their individual signatures by using PS1 calls, in a manner similar to that of signature whistles used by bottlenose dolphins

Reactions of Heaviside’s dolphins to tagging attempts using remotely-deployed suction-cup tags

Tagging attempts of Heaviside’s dolphins (Cephalorhynchus heavisidii ) using a remotely-deployed suction-cup tag were performed in Table Bay and St Helena Bay on the southwest coast of South Africa. The observed reactions of dolphins indicate that this tagging approach has negligible impacts on the dolphin behaviour and Heaviside’s dolphins might be tagged with suction cup tags without adverse affects.South African National Research Foundation grant no. 61472.http://www.sawma.co.za