Timescales of carbon turnover in soils with mixed crystalline mineralogies

Organic matter–mineral associations stabilize much of the carbon (C) stored globally in soils. Metastable short-range-order (SRO) minerals such as allophane and ferrihydrite provide one mechanism for long-term stabilization of organic matter in young soil. However, in soils with few SRO minerals and a predominance of crystalline aluminosilicate or Fe (and Al) oxyhydroxide, C turnover should be governed by chemisorption with those minerals. Here, we correlate mineral composition from soils containing small amounts of SRO minerals with mean turnover time (TT) of C estimated from radiocarbon (¹⁴C) in bulk soil, free light fraction and mineral-associated organic matter. We varied the mineral amount and composition by sampling ancient soils formed on different lithologies in arid to subhumid climates in Kruger National Park (KNP), South Africa. Mineral contents in bulk soils were assessed using chemical extractions to quantify Fe oxyhydroxides and SRO minerals. Because of our interest in the role of silicate clay mineralogy, particularly smectite (2 : 1) and kaolinite (1 : 1), we separately quantified the mineralogy of the clay-sized fraction using X-ray diffraction (XRD) and measured ¹⁴C on the same fraction. <br><br> Density separation demonstrated that mineral associated C accounted for 40–70 % of bulk soil organic C in A and B1 horizons for granite, nephelinite and arid-zone gabbro soils, and &gt; 80 % in other soils. Organic matter strongly associated with the isolated clay-sized fraction represented only 9–47 % of the bulk soil C. The mean TT of C strongly associated with the clay-sized fraction increased with the amount of smectite (2 : 1 clays); in samples with &gt; 40 % smectite it averaged 1020 ± 460 years. The C not strongly associated with clay-sized minerals, including a combination of low-density C, the C associated with minerals of sizes between 2 µm and 2 cm (including Fe oxyhydroxides as coatings), and C removed from clay-sized material by 2 % hydrogen peroxide had TTs averaging 190 ± 190 years in surface horizons. Summed over the bulk soil profile, we found that smectite content correlated with the mean TT of bulk soil C across varied lithologies. The SRO mineral content in KNP soils was generally very low, except for the soils developed on gabbros under more humid climate that also had very high Fe and C contents with a surprisingly short, mean C TTs. In younger landscapes, SRO minerals are metastable and sequester C for long timescales. We hypothesize that in the KNP, SRO minerals represent a transient stage of mineral evolution and therefore lock up C for a shorter time. <br><br> Overall, we found crystalline Fe-oxyhydroxides (determined as the difference between Fe in dithionate citrate and oxalate extractions) to be the strongest predictor for soil C content, while the mean TT of soil C was best predicted from the amount of smectite, which was also related to more easily measured bulk properties such as cation exchange capacity or pH. Combined with previous research on C turnover times in 2 : 1 vs. 1 : 1 clays, our results hold promise for predicting C inventory and persistence based on intrinsic timescales of specific carbon–mineral interactions

Contribution of new photosynthetic assimilates to respiration by perennial grasses and shrubs: residence times and allocation patterns

Quantification of the fate of carbon (C) used by plant metabolism is necessary to improve predictions of terrestrial ecosystem respiration and its sources. Here, a dual isotope (C-13 and C-14) pulse-label was used to determine the allocation of new C to different respiratory pathways in the early and late growing seasons for two plant functional types, perennial grasses and shrubs, in the Owens Valley, CA, USA. Allocation differences between plant types exceeded seasonal allocation variation. Grasses respired 71 and 64% and shrubs respired 22 and 17% of the label below-ground in the early and late growing seasons, respectively. Across seasons and plant types, similar to 48-61% of the label recovered was respired in 24 h, similar to 68-84% in 6 d, and similar to 16-33% in 6-36 d after labeling. Three C pools were identified for plant metabolism: a fast pool with mean residence times (MRTs) of similar to 0.5 and similar to 1 d below- and above-ground, respectively; an intermediate pool with MRTs of 19.9 and 18.9 d; and a storage pool detected in new leaf early growing season respiration > 9 months after assimilation. Differences in allocation to fast vs intermediate C pools resulted in the mean age of C respired by shrubs being shorter (3.8-4.5 d) than that of the grasses (4.8-8.2 d)

The impact of land use change on C turnover in soils

Measurements of CO2 flux, soil temperature, and moisture content of selected natural and disturbed soils in central California were made on a monthly basis from August 1994 to October 1995 in an attempt to detect the effects of temperature, moisture, and land use change on CO2 production in soils. Soil CO2 flux displayed a strong negative correlation with soil temperature and a positive correlation with soil moisture at the natural site. However, at the disturbed site, the linear correlation between CO2 flux and temperature/moisture was insignificant. The negative correlation between soil CO2 flux and soil temperature is in contrast to what has been observed in other ecosystems but is typical for Mediterranean ecosystems in which grasses are biologically active only during cool months. Comparison of carbon (C) inventories of paired natural and disturbed soils indicates that both cultivation and logging have resulted in a significant decrease in total soil C content. The reduction in soil C storage is about 26% for the cultivated soil and around 30% for the logged soil. Most of the C loss is from the upper horizons. Radiocarbon (C-14) measurements of both recent and archived soil samples demonstrate large differences in C input rate and turnover time between natural and disturbed soils. The average turnover times of organic matter are longer in disturbed soils than in the corresponding natural soils as a result of preferential loss of C from "active" soil C pools. In both natural and disturbed soils, the average turnover times of organic matter increase with depth from decades or less in shallow horizons to hundreds of years or even thousands of years in deeper horizons. Our results show that land use change can have significant impact on soil C cycle and that shallow soil horizons are most susceptible to disturbance because of shorter turnover times of organic C in these horizons

Models of soil organic matter decomposition: the SOILR package, version 1.0

Soil organic matter decomposition is a very important process within the Earth system because it controls the rates of mineralization of carbon and other biogeochemical elements, determining their flux to the atmosphere and the hydrosphere. SOILR is a modeling framework that contains a library of functions and tools for modeling soil organic matter decomposition under the R environment for computing. It implements a variety of model structures and tools to represent carbon storage and release from soil organic matter. In SOILR, organic matter decomposition is represented as a linear system of ordinary differential equations that generalizes the structure of most compartment-based decomposition models. A variety of functions is also available to represent environmental effects on decomposition rates. This document presents the conceptual basis for the functions implemented in the package. It is complementary to the help pages released with the software

Simultaneous real-time measurement of isoprene and 2-methyl-3-buten-2-ol emissions from trees using SIFT-MS

The C5 hemiterpenes isoprene and 2-methyl-3-buten-2-ol (MBO) are important biogenic volatiles emitted from terrestrial vegetation. Isoprene is emitted from many plant groups, especially trees such as Populus, while emission of MBO is restricted to certain North American conifers, including species of Pinus. MBO is also a pheromone emitted by several conifer bark beetles. Both isoprene and MBO have typically been measured by proton-transfer reaction mass spectrometry (PTR-MS), but this method cannot accurately distinguish between them because of their signal overlap. Our study developed a method for using selective ion flow tube mass spectrometry (SIFT-MS) that allows simultaneous on-line measurement of isoprene and MBO by employing different reagent ions. The use of m/z(NO+) = 68 u for isoprene and m/z(O2 +) = 71 u for MBO gave minimal interference between the compounds. We tested the suitability of the method by measuring the emission of young trees of Populus, Picea, and Pinus. Our results largely confirm previous findings that Populus nigra, Picea glauca, and Picea abies emit isoprene and Pinus ponderosa emits MBO, but we also found MBO to be emitted by Picea abies. Thus SIFT-MS provides a reliable, easy to use, on-line measuring tool to distinguish between isoprene and MBO. The method should be of use to atmospheric chemists, tree physiologists and forest entomologists, among others

Anomalous AMS radiocarbon ages for foraminifera from high-deposition-rate ocean sediments

Radiocarbon ages on handpicked foraminifera from deep-sea cores are revealing that areas of rapid sediment accumulation are in some cases subject to hiatuses, reworking and perhaps secondary calcite deposition. We present here an extreme example of the impacts of such disturbances. The message is that if precise chronologies or meaningful benthic planktic age differences are to be obtained, then it is essential to document the reliability of radiocarbon ages by making both comparisons between coexisting species of planktomc foraminifera and detailed down-core sequences of measurements