Correction of the baseline fluctuations in the GEM-based ALICE TPC

The impact of the so-called common-mode effect and of the ion tail on the signal shapes in the upgraded ALICE Time Projection Chamber with gas-electron multiplier readout are investigated. These two effects lead to significant baseline fluctuations, degrading the particle identification and tracking performance, as well as to baseline bias affecting the amount of data collected. Since reconstruction and data compression are performed fully online during the Run~3 and Run~4 data-taking periods of the Large Hadron Collider, these effects must be corrected at the hardware level in the FPGA-based Common Readout Units. The characteristics of the common-mode effect and of the ion tail, as well as the algorithms developed for their online correction, are described. The common-mode dependencies are studied using machine learning techniques. Toy Monte Carlo simulations are performed to illustrate the importance of online corrections and to investigate the performance of the developed algorithms

Do colorectal cancer patients diagnosed as an emergency differ from non-emergency patients in their consultation patterns and symptoms? A longitudinal data-linkage study in England

Background: More than 20% of colorectal cancers are diagnosed following an emergency presentation. We aimed to examine pre-diagnostic primary-care consultations and related symptoms comparing patients diagnosed as emergencies with those diagnosed through non-emergency routes. Methods: Cohort study of colorectal cancers diagnosed in England 2005 and 2006 using cancer registration data individually linked to primary-care data (CPRD/GPRD), allowing a detailed analysis of clinical information referring to the 5-year pre-diagnostic period. Results: Emergency diagnosis occurred in 35% and 15% of the 1029 colon and 577 rectal cancers. ‘Background’ primary-care consultations (2–5 years before diagnosis) were similar for either group. In the year before diagnosis, >95% of emergency and non-emergency presenters had consulted their doctor, but emergency presenters had less frequently relevant symptoms (colon cancer: 48% vs 71% (P<0.001); rectal cancer: 49% vs 61% (P=0.043)). ‘Alarm’ symptoms were recorded less frequently in emergency presenters (e.g., rectal bleeding: 9 vs 24% (P=0.002)). However, about 1/5 of emergency presenters (18 and 23% for colon and rectal cancers) had ‘alarm’ symptoms the year before diagnosis. Conclusions: Emergency presenters have similar ‘background’ consultation history as non-emergency presenters. Their tumours seem associated with less typical symptoms, however opportunities for earlier diagnosis might be present in a fifth of them

Systematic Investigation of the Permeability of Androgen Receptor PROTACs

Bifunctional molecules known as PROTACs simultaneously bind an E3 ligase and a protein of interest to direct ubiquitination and clearance of that protein, and they have emerged in the past decade as an exciting new paradigm in drug discovery. In order to investigate the permeability and properties of these large molecules, we synthesized two panels of PROTAC molecules, constructed from a range of protein-target ligands, linkers, and E3 ligase ligands. The androgen receptor, which is a well-studied protein in the PROTAC field was used as a model system. The physicochemical properties and permeability of PROTACs are discussed

Velocity Correlations in Driven Two-Dimensional Granular Media

Simulations of volumetrically forced granular media in two dimensions produce s tates with nearly homogeneous density. In these states, long-range velocity correlations with a characteristic vortex structure develop; given sufficient time, the correlations fill the entire simulated area. These velocity correlations reduce the rate and violence of collisions, so that pressure is smaller for driven inelastic particles than for undriven elastic particles in the same thermodynamic state. As the simulation box size increases, the effects of veloc ity correlations on the pressure are enhanced rather than reduced.Comment: 12 pages, 6 figures, 21 reference

Heavy Flavour Production in Two-Photon Collisions

We review the production of charm and bottom quarks in two-photon collisions at e+e- colliders. The next-to-leading order QCD predictions for total cross sections and differential distributions are compared with recent experimental results.Comment: 6 pages, 2 figures. Talk given at the UK Phenomenology Workshop on Collider Physics, Durham, England, 19-24 Sep 199

Fluctuations in granular gases

A driven granular material, e.g. a vibrated box full of sand, is a stationary system which may be very far from equilibrium. The standard equilibrium statistical mechanics is therefore inadequate to describe fluctuations in such a system. Here we present numerical and analytical results concerning energy and injected power fluctuations. In the first part we explain how the study of the probability density function (pdf) of the fluctuations of total energy is related to the characterization of velocity correlations. Two different regimes are addressed: the gas driven at the boundaries and the homogeneously driven gas. In a granular gas, due to non-Gaussianity of the velocity pdf or lack of homogeneity in hydrodynamics profiles, even in the absence of velocity correlations, the fluctuations of total energy are non-trivial and may lead to erroneous conclusions about the role of correlations. In the second part of the chapter we take into consideration the fluctuations of injected power in driven granular gas models. Recently, real and numerical experiments have been interpreted as evidence that the fluctuations of power injection seem to satisfy the Gallavotti-Cohen Fluctuation Relation. We will discuss an alternative interpretation of such results which invalidates the Gallavotti-Cohen symmetry. Moreover, starting from the Liouville equation and using techniques from large deviation theory, the general validity of a Fluctuation Relation for power injection in driven granular gases is questioned. Finally a functional is defined using the Lebowitz-Spohn approach for Markov processes applied to the linear inelastic Boltzmann equation relevant to describe the motion of a tracer particle. Such a functional results to be different from injected power and to satisfy a Fluctuation Relation.Comment: 40 pages, 18 figure

Uncertainties of the CJK 5 Flavour LO Parton Distributions in the Real Photon

Radiatively generated, LO quark (u,d,s,c,b) and gluon densities in the real, unpolarized photon, calculated in the CJK model being an improved realization of the CJKL approach, have been recently presented. The results were obtained through a global fit to the experimental F2^gamma data. In this paper we present, obtained for the very first time in the photon case, an estimate of the uncertainties of the CJK parton distributions due to the experimental errors. The analysis is based on the Hessian method which was recently applied in the proton parton structure analysis. Sets of test parametrizations are given for the CJK model. They allow for calculation of its best fit parton distributions along with F2^gamma and for computation of uncertainties of any physical value depending on the real photon parton densities. We test the applicability of the approach by comparing uncertainties of example cross-sections calculated in the Hessian and Lagrange methods. Moreover, we present a detailed analysis of the chi^2 of the CJK fit and its relation to the data. We show that large chi^2/DOF of the fit is due to only a few of the experimental measurements. By excluding them chi^2/DOF approx 1 can be obtained.Comment: 28 pages, 8 eps figures, 2 Latex figures; FORTRAN programs available at http://www.fuw.edu.pl/~pjank/param.html; table 10, figure 10 and section 6 correcte

Dynamics of Parasite Clearance in Cutaneous Leishmaniasis Patients Treated with Miltefosine

Parasite loads were quantified in repeated skin biopsies from lesions of 2 patients with Old-World cutaneous leishmaniasis (CL) caused by Leishmania major and L. infantum during and after treatment with miltefosine. Miltefosine induced a rapid therapeutic effect on both infections with an initial decline of parasites of ∼1 log/week for the L. major infection. These observations illustrate the usability of quantifying parasite loads in skin lesions as a pharmacodynamic measure and quantitative descriptor of drug effect for CL supporting clinical assessment