19,262 research outputs found
Enhancing the Efficiency of Organic Photovoltaics by a Photoactive Molecular Mediator
High boiling-point solvent additives, such as 1,8-diiodooctane, have been widely used to tune nanoscale phase morphology for increased efficiency in bulk heterojunction organic solar cells. However, liquid-state solvent additives remain in the active films for extended times and later migrate or evaporate from the films, leading to unstable device performance. Here, a solid-state photoactive molecular mediator, namely N(BAI)3, is reported that could be employed to replace the commonly used solvent additives to tune the morphology of bulk heterojunction films for improved device performance. The N(BAI)3 mediator not only resides in the active films locally to fine tune the phase morphology, but also contributes to the additional absorption of the active films, leading to ∼11% enhancement of power conversion efficiency of P3HT:PC60BM devices. Comparative studies are carried out to probe the nanoscale morphologies using grazing incidence wide-angle X-ray scattering and complementary neutron reflectometry. The use of 1 wt% N(BAI)3 is found to effectively tune the packing of P3HT, presumably through balanced π-interactions endowed by its large conjugated π surface, and to promote the formation of a PC60BM-rich top interfacial layer. These findings open up a new way to effectively tailor the phase morphology by photoactive molecular mediators in organic photovoltaics
The perception of intonation questions and statements in Cantonese
In tone languages there are potential conflicts in the perception of lexical tone and intonation, as both depend mainly on the differences in fundamental frequency (F0) patterns. The present study investigated the acoustic cues associated with the perception of sentences as questions or statements in Cantonese, as a function of the lexical tone in sentence final position. Cantonese listeners performed intonation identification tasks involving complete sentences, isolated final syllables, and sentences without the final syllable (carriers). Sensitivity (d′ scores) were similar for complete sentences and final syllables but were significantly lower for carriers. Sensitivity was also affected by tone identity. These findings show that the perception of questions and statements relies primarily on the F0 characteristics of the final syllables (local F0 cues). A measure of response bias (c) provided evidence for a general bias toward the perception of statements. Logistic regression analyses showed that utterances were accurately classified as questions or statements by using average F0 and F0 interval. Average F0 of carriers (global F0 cue) was also found to be a reliable secondary cue. These findings suggest that the use of F0 cues for the perception of intonation question in tonal languages is likely to be language-specific. © 2011 Acoustical Society of America.published_or_final_versio
Participant perceptions of physical activity-enhancing interventions for adults with disability: A meta-synthesis of qualitative research
The United Nations Convention on the Rights of Persons with Disabilities enshrines the rights of disabled people to access services in all areas of citizenship including participation in recreational, leisure and sport activities. Despite this protection, people with disabilities face multiple personal, environmental and social barriers to participation in physical activity (PA). As a result, disabled people are more likely to be inactive compared to the able bodied population and are at a greater risk of inactivity-related diseases. Thus, there is an urgent need for behaviour change interventions to increase PA by specifically addressing the situations of people with disabilities and their barriers to participation. This original meta-synthesis of qualitative research was undertaken to explore participants’ perceptions of PA-enhancing interventions for adults with physical disability. To identify published articles relevant to the meta-synthesis, a rigorous systematic search of electronic databases and hand search of relevant journals was undertaken. In total, 76 papers were read in full, and based on the inclusion criteria, 10 papers were included for review. Following a critical appraisal of the papers, methods of thematic synthesis were drawn upon to generate analytical themes through interpretation and conceptual synthesis. Seven interrelated analytical themes were constructed representing both components and outcomes of the interventions. These were: (i) social support; (ii) diversity; (iii) communication; (iv) behavioural strategies; (v) changing thoughts; (vi) knowledge; (vii) health and well-being. The results of this meta-synthesis provide significant new information that will help interventionists design more effective PA-enhancing interventions, and researchers to better identify and measure key mechanisms and outcomes associated with successful PA-enhancing interventions for people with disabilities
INDELseek: Detection Of Complex Insertions And Deletions From Next-generation Sequencing Data
BACKGROUND: Complex insertions and deletions (indels) from next-generation sequencing (NGS) data were prone to escape detection by currently available variant callers as shown by large-scale human genomics studies. Somatic and germline complex indels in key disease driver genes could be missed in NGS-based genomics studies. RESULTS: INDELseek is an open-source complex indel caller designed for NGS data of random fragments and PCR amplicons. The key differentiating factor of INDELseek is that each NGS read alignment was examined as a whole instead of 'pileup' of each reference position across multiple alignments. In benchmarking against the reference material NA12878 genome (n = 160 derived from high-confidence variant calls), GATK, SAMtools and INDELseek showed complex indel detection sensitivities of 0%, 0% and 100%, respectively. INDELseek also detected all known germline (BRCA1 and BRCA2) and somatic (CALR and JAK2) complex indels in human clinical samples (n = 8). Further experiments validated all 10 detected KIT complex indels in a discovery cohort of clinical samples. In silico semi-simulation showed sensitivities of 93.7-96.2% based on 8671 unique complex indels in >5000 genes from dbSNP and COSMIC. We also demonstrated the importance of complex indel detection in accurately annotating BRCA1, BRCA2 and TP53 mutations with gained or rescued protein-truncating effects. CONCLUSIONS: INDELseek is an accurate and versatile tool for complex indel detection in NGS data. It complements other variant callers in NGS-based genomics studies targeting a wide spectrum of genetic variations.published_or_final_versio
Recommended from our members
A fixed-target platform for serial femtosecond crystallography in a hydrated environment.
For serial femtosecond crystallography at X-ray free-electron lasers, which entails collection of single-pulse diffraction patterns from a constantly refreshed supply of microcrystalline sample, delivery of the sample into the X-ray beam path while maintaining low background remains a technical challenge for some experiments, especially where this methodology is applied to relatively low-ordered samples or those difficult to purify and crystallize in large quantities. This work demonstrates a scheme to encapsulate biological samples using polymer thin films and graphene to maintain sample hydration in vacuum conditions. The encapsulated sample is delivered into the X-ray beam on fixed targets for rapid scanning using the Roadrunner fixed-target system towards a long-term goal of low-background measurements on weakly diffracting samples. As a proof of principle, we used microcrystals of the 24 kDa rapid encystment protein (REP24) to provide a benchmark for polymer/graphene sandwich performance. The REP24 microcrystal unit cell obtained from our sandwiched in-vacuum sample was consistent with previously established unit-cell parameters and with those measured by us without encapsulation in humidified helium, indicating that the platform is robust against evaporative losses. While significant scattering from water was observed because of the sample-deposition method, the polymer/graphene sandwich itself was shown to contribute minimally to background scattering
Randomized phase III KEYNOTE-045 trial of pembrolizumab versus paclitaxel, docetaxel, or vinflunine in recurrent advanced urothelial cancer: results of >2 years of follow-up.
BackgroundNovel second-line treatments are needed for patients with advanced urothelial cancer (UC). Interim analysis of the phase III KEYNOTE-045 study showed a superior overall survival (OS) benefit of pembrolizumab, a programmed death 1 inhibitor, versus chemotherapy in patients with advanced UC that progressed on platinum-based chemotherapy. Here we report the long-term safety and efficacy outcomes of KEYNOTE-045.Patients and methodsAdult patients with histologically/cytologically confirmed UC whose disease progressed after first-line, platinum-containing chemotherapy were enrolled. Patients were randomly assigned 1 : 1 to receive pembrolizumab [200 mg every 3 weeks (Q3W)] or investigator's choice of paclitaxel (175 mg/m2 Q3W), docetaxel (75 mg/m2 Q3W), or vinflunine (320 mg/m2 Q3W). Primary end points were OS and progression-free survival (PFS) per Response Evaluation Criteria in Solid Tumors, version 1.1 (RECIST v1.1) by blinded independent central radiology review (BICR). A key secondary end point was objective response rate per RECIST v1.1 by BICR.ResultsA total of 542 patients were enrolled (pembrolizumab, n = 270; chemotherapy, n = 272). Median follow-up as of 26 October 2017 was 27.7 months. Median 1- and 2-year OS rates were higher with pembrolizumab (44.2% and 26.9%, respectively) than chemotherapy (29.8% and 14.3%, respectively). PFS rates did not differ between treatment arms; however, 1- and 2-year PFS rates were higher with pembrolizumab. The objective response rate was also higher with pembrolizumab (21.1% versus 11.0%). Median duration of response to pembrolizumab was not reached (range 1.6+ to 30.0+ months) versus chemotherapy (4.4 months; range 1.4+ to 29.9+ months). Pembrolizumab had lower rates of any grade (62.0% versus 90.6%) and grade ≥3 (16.5% versus 50.2%) treatment-related adverse events than chemotherapy.ConclusionsLong-term results (>2 years' follow-up) were consistent with those of previously reported analyses, demonstrating continued clinical benefit of pembrolizumab over chemotherapy for efficacy and safety for treatment of locally advanced/metastatic, platinum-refractory UC.Trial registrationClinicalTrials.gov: NCT02256436
Cytokine mRNA profiles in Epstein-Barr virus-associated post-transplant lymphoproliferative disorders.
Cytokine mRNA patterns were analyzed in 11 post-transplant lymphoproliferative disorder (PTLD) specimens using qualitative reverse-transcriptase polymerase chain reaction (RT-PCR). In each case, a pattern of IL2-, IFN gamma-, IL4+, IL10+ was seen. A similar pattern was observed in a spleen sample from 1 patient with contemporaneous PTLD elsewhere. Semiquantitative RT-PCR for cytokine message was performed using RNA from bronchoalveolar lavage (BAL) specimens obtained from 2 patients with pulmonary PTLD. In both cases, IL4 message predominated. Reduction of message coincided with resolution of the tumors. The pattern differed from that seen in 1 patient with acute pulmonary rejection, in which RT-PCR of BAL cells showed predominance of IL6 and IFN gamma. We conclude that at least some PTLDs exist within a T-helper cell type 2 (Th2)-like cytokine microenvironment. The presence of a similar mRNA pattern in an extratumoral specimen at the time of PTLD suggests that it may reflect a systemic phenomenon. Disappearance of this pattern following PTLD resolution indicates its dynamic nature and is consistent with the hypothesis that specific cytokines contribute to the development of PTLDs
The J-triplet Cooper pairing with magnetic dipolar interactions
Recently, cold atomic Fermi gases with the large magnetic dipolar interaction
have been laser cooled down to quantum degeneracy. Different from
electric-dipoles which are classic vectors, atomic magnetic dipoles are
quantum-mechanical matrix operators proportional to the hyperfine-spin of
atoms, thus provide rich opportunities to investigate exotic many-body physics.
Furthermore, unlike anisotropic electric dipolar gases, unpolarized magnetic
dipolar systems are isotropic under simultaneous spin-orbit rotation. These
features give rise to a robust mechanism for a novel pairing symmetry: orbital
p-wave (L=1) spin triplet (S=1) pairing with total angular momentum of the
Cooper pair J=1. This pairing is markedly different from both the He-B
phase in which J=0 and the He- phase in which is not conserved. It
is also different from the p-wave pairing in the single-component electric
dipolar systems in which the spin degree of freedom is frozen
Growth and dislocation studies of β-HMX
Background: The defect structure of organic materials is important as it plays a major role in their crystal growth
properties. It also can play a subcritical role in “hot-spot” detonation processes of energetics and one such
energetic is cyclotetramethylene-tetranitramine, in the commonly used beta form (β-HMX).
Results: The as-grown crystals grown by evaporation from acetone show prismatic, tabular and columnar habits, all
with {011}, {110}, (010) and (101) faces. Etching on (010) surfaces revealed three different types of etch pits, two of
which could be identified with either pure screw or pure edge dislocations, the third is shown to be an artifact of
the twinning process that this material undergoes. Examination of the {011} and {110} surfaces show only one type
of etch pit on each surface; however their natural asymmetry precludes the easy identification of their Burgers
vector or dislocation type. Etching of cleaved {011} surfaces demonstrates that the etch pits can be associated with
line dislocations. All dislocations appear randomly on the crystal surfaces and do not form alignments characteristic
of mechanical deformation by dislocation slip.
Conclusions: Crystals of β-HMX grown from acetone show good morphological agreement with that predicted by
modelling, with three distinct crystal habits observed depending upon the supersaturation of the growth solution.
Prismatic habit was favoured at low supersaturation, while tabular and columnar crystals were predominant at
higher super saturations. The twin plane in β-HMX was identified as a (101) reflection plane. The low plasticity of
β-HMX is shown by the lack of etch pit alignments corresponding to mechanically induced dislocation arrays.
On untwinned {010} faces, two types of dislocations exist, pure edge dislocations with b = [010] and pure screw
dislocations with b = [010]. On twinned (010) faces, a third dislocation type exists and it is proposed that these pits
are associated with pure screw dislocations with b = [010]
- …
