Clover rot (Sclerotinia trifolium) and Fusarium fungi in organic red clover in Finland

Sclerotinia trifolium is economically one of the most important pathogens of red clover in Europe and North America, while many Fusarium species can cause root rot in red clover in certain environmental conditions. During the years 2003-2004 S. trifolium was found only in the Northern and Eastern part of Finland, although in 1960's it was common everywhere in Finland

Fusarium DNA levels as compared to mycotoxin levels in finnish and estonian grain samples

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Mould incidence and mycotoxin contamination in freshly harvested maize kernels originated from India

BACKGROUND: In this study, mould incidence and mycotoxin contamination were determined in freshly harvested maize samples collected from different agroclimatic regions of India. A total of 150 freshly harvested maize samples from major maize-growing areas of India (Karnataka, Andhra Pradesh and Tamilnadu) were collected during winter seasons 2010-2011 and 2011-2012 to determine their toxigenic fungal incidences, and mycotoxins were analyzed and quantified by high-perfomance liquid chromatography. A total of 288 fungal isolates comprising Fusarium, Aspergillus and Penicillium species were tested for aflatoxin B1 (AFB1), ochratoxin A (OTA), trichothecenes (deoxynivalenol (DON) and T-2 toxin) and fumonisin B1 (FB1). Chemotype determination of fungal isolates was carried out by molecular and chemical analysis through polymerase chain reaction (PCR) and high-performance thin layer chromatography respectively. The diversity and distribution of the mycoflora among the studied samples were recorded in terms of frequency, density, importance value index and diversity indices. RESULTS: A total of 288 fungal isolates were recovered from the 150 maize samples, of which 28 were positive for AFB1, 20 for OTA, 58 for FB1, 23 for DON and 11 for T-2 toxin chemotypes by PCR. Species-specific PCR assays were in line with morphological analysis. Toxigenic fungal incidences were found throughout the study region, and most of the toxins under study exceeded the maximum legal limits. The range of observed toxin concentrations were 48-58 &micro;g AFB1, 76-123 &micro;g FB1, 38-50 &micro;g T-2, 72-94 &micro;g DON and &lt;5 &micro;g OTA kg(-1) grain sample. CONCLUSION: Owing to the high incidences of toxigenic moulds and mycotoxins in the study area, there is a need for the creation of mycotoxin awareness among maize farmers of India to control the chronic adverse health effects on humans and livestock due to mycotoxins.</p

Different grain grinding methods affect detection of Fusarium graminearum DNA and mycotoxins

Fusarium graminearum is the most important deoxynivalenol (DON) producing species in northern Europe and Asia. The highest DON levels in Finland have been found in oat grain, and DNA levels of F. graminearum are in agreement with DON levels, when DON is measured by accredited GC-MS. In addition to DON, 3ADON is present in Finnish grain samples. Large variations in DON content and amounts of F graminearum DNA, and poor coefficient of determination (R-2) between these, have been detected in oat grain when the RIDA (R) QUICKSCAN kit results for DON content have been used. This study confirmed that the coefficient of determination was usually less when DNA or DON were extracted from oat flour, which was not ground with 0.8 mm or 1 mm sieves. DON levels obtained with the Rida Quick method were usually higher than those obtained with accredited GC-MS in Finnish oat, barley and wheat samples. The homogenization of the oat flour by sieving is therefore likely to be connected to the variations in DON detection. Amounts of F graminearum DNA and DON close to legislative limits should be reconfirmed with accredited quantitative analyses

New genotypes of aflatoxigenic fungi from Egypt and the Philippines

Aflatoxins (AFs), mainly produced by Aspergillus section Flavi, are the major natural toxins of crops and commodities in hot climatic geographic regions. These toxins are considered as type A carcinogens. One hundred and sixty single spore isolates of A. section Flavi were isolated from two different geographical places, Egypt and the Philippines. A quarter (26.5%) of the isolates was able to produce AFs. Four chemotypes of aflatoxin-producing fungi were obtained. Surprisingly, all aflatoxin-producing A. nomius isolates produced higher amounts (2400-40400 ng ml-1) of total AFs (AFB1, AFB2, AFG1 and AFG2) than the toxigenic A. flavus isolates (</p

Population Analysis of the Fusarium graminearum Species Complex from Wheat in China Show a Shift to More Aggressive Isolates

A large number of Fusarium isolates was collected from blighted wheat spikes originating from 175 sampling sites, covering 15 provinces in China. Species and trichothecene chemotype determination by multilocus genotyping (MLGT) indicated that F. graminearum s. str. with the 15-acetyl deoxynivalenol (15ADON) chemotype and F. asiaticum with either the nivalenol (NIV) or the 3-acetyl deoxynivalenol (3ADON) chemotype were the dominant causal agents. Bayesian model-based clustering with allele data obtained with 12 variable number of tandem repeats (VNTR) markers, detected three genetic clusters that also show distinct chemotypes. High levels of population genetic differentiation and low levels of effective number of migrants were observed between these three clusters. Additional genotypic analyses revealed that F. graminearum s. str. and F. asiaticum are sympatric. In addition, composition analysis of these clusters indicated a biased gene flow from 3ADON to NIV producers in F. asiaticum. In phenotypic analyses, F. asiaticum that produce 3ADON revealed significant advantages over F. asiaticum that produce NIV in pathogenicity, growth rate, fecundity, conidial length, trichothecene accumulation and resistance to benzimidazole. These results suggest that natural selection drives the spread of a more vigorous, more toxigenic pathogen population which also shows higher levels of fungicide resistance

IGS-RFLP analysis and development of molecular markers for identification of Fusarium poae, Fusarium langsethiae, Fusarium sporotrichioides and Fusarium kyushuense

The intergenic spacer (IGS) regions of the rDNA of several Fusarium spp. strains obtained from the collaborative researchers (Int. J. Food Microbiol. (2003)) were amplified by polymerase chain reaction (PCR), and an IGS¿RFLP analysis was performed. Restriction digestion with AluI, MspI and PstI allowed differentiation between the related Fusarium poae and Fusarium kyushuense species. Fusarium langsethiae was also separated from Fusarium sporotrichioides (including var. minus) on the basis of the banding patterns after MspI digestion, while specific XhoI, AluI and MspI restriction patterns were found in the IGS amplicons of F. sporotrichioides var. minus. According to the phylogenetic analysis of IGS¿RFLP patterns, F. langsethiae (except for one strain), F. sporotrichioides, F. poae and F. kyushuense strains formed four well-supported clades with high-bootstrap values. Based on the sequence differences in the IGS region, species-specific primers were designed for the F. langsethiae/F. sporotrichioides group and for F. poae. The specificity and sensitivity of the primers were tested on various Fusarium species and isolates, and on several other important fungal genera associated with cereals. The F. poae-specific primers, designed in this study, showed the same specificity as primers Fp82f/Fp82r developed previously. The two phylogenetic subgroups of F. langsethiae, found by IGS sequencing analysis, were separated on the basis of size differences of the amplification products with primers CNL12/PulvIGSr specific for the F. langsethiae/F. sporotrichioides group. RFLP analysis of the amplified IGS region is a useful molecular assay for characterisation and a phylogenetic study of several related Fusarium species¿F. langsethiae, F. sporotrichioides, F. sporotrichioides var. minus, F. poae and F. kyushuense. The primers designed in this study were highly specific and allowed identification of F. poae and the F. langsethiae/F. sporotrichioides group