Etablierung eines neuen Hybridsystems zur Züchtung von Möhren mit spezifischer Anbaueignung unter Trocken- und Salzstressbedingungen in Zentralasien

Establishment of a new hybrid system for carrot breeding with enhanced drought and salt stress tolerance in Central Asia ZusammenfassungDie Züchtung neuer Möhrenhybriden mit verbesserter Trocken- und Salzstresstoleranz kann einen nachhaltigen Beitrag zur Steigerung der Anbaufläche, höhere Ertragsstabilität und eine wesentliche Qualitätsverbesserung des Erntegutes leisten. Ziel des Projektes ist es ein neues Hybridsystem zu etablieren und geeignete Hybridpartner auf der Basis wissenschaftlicher Evaluierungsdaten zu selektieren. Zur Evaluation und Selektion von trocken- und salzstresstoleranten Möhren-Genotypen wurde ein Prüfverfahren in Topfkultur unter Klimakammerbedingungen entwickelt. Die Ergebnisse der ersten Versuche sollen vorgestellt werden.Stichwörter: Möhren, Hybridsystem, Trocken- und SalzstresstoleranzAbstractPlant breeding of a new carrot hybrid with an enhanced drought and salt stress tolerance may lead to a sustained increase the global carrot production, stabilization of yield and quality. It is the goal to establish a new hybrid system and to select suitable hybrid partners based on scientific evaluation. A laboratory test (climate chamber) was developed to evaluate and select carrot cultivars with salt stress tolerance. The results of the first experiments will be presented. Keywords: carrot, hybrid, drought tolerance, salt stress toleranc

International VLBI Service for Geodesy and Astrometry: Delivering high-quality products and embarking on observations of the next generation

© 2016 Springer-Verlag Berlin HeidelbergThe International VLBI Service for Geodesy and Astrometry (IVS) regularly produces high-quality Earth orientation parameters from observing sessions employing extensive networks or individual baselines. The master schedule is designed according to the telescope days committed by the stations and by the need for dense sampling of the Earth orientation parameters (EOP). In the pre-2011 era, the network constellations with their number of telescopes participating were limited by the playback and baseline capabilities of the hardware (Mark4) correlators. This limitation was overcome by the advent of software correlators, which can now accommodate many more playback units in a flexible configuration. In this paper, we describe the current operations of the IVS with special emphasis on the quality of the polar motion results since these are the only EOP components which can be validated against independent benchmarks. The polar motion results provided by the IVS have improved continuously over the years, now providing an agreement with IGS results at the level of 20–25 (Formula presented.)as in a WRMS sense. At the end of the paper, an outlook is given for the realization of the VLBI Global Observing System

CarrotDiverse : understanding variation in a wild relative of carrot

Genebanks and other ex situ collections have a significant role in the conservation, management and use of crop genetic diversity, including that of crop wild relatives. Efficient management and use depends on insight into the patterning and distribution of genetic diversity as well as obtaining baseline information on phenotypic characters and traits. Wild carrot (Daucus carota L.) is the closest wild relative of cultivated carrot (Daucus carota L. subsp. sativus (Hoffm.) Arcang.), and is a potential source of useful traits for crop improvement. There are over 900 accessions of D. carota described as wild in European genebanks, however associated phenotypic and genotypic characterization data are sparse. The influence of environment on phenotype is also not well understood in this taxon, meaning that it is difficult to ascertain how data collected at different locations can be compiled and collated. We present initial results of CarrotDiverse, a collaborative project in which wild D. carota accessions are undergoing detailed phenotypic and morphological characterization in parallel at three sites of varying latitude across Europe located in Portugal, France and Sweden. This will allow us to understand which traits are affected by environmental variables. Basic phenotypic information is being collected on a further 150 accessions. Furthermore, resistance screening to Alternaria species and polyacetylene profiling will be included in the evaluation. A Genotyping by Sequencing approach will be used to generate knowledge about genetic background and trait associations. The project will result in a significant data set which will facilitate the use of crop wild relatives in carrot breeding and improvement

Association of toll-interacting protein gene polymorphisms with atopic dermatitis

BACKGROUND: Atopic dermatitis (AD) is a common inflammatory skin disorder, affecting up to 15% of children in industrialized countries. Toll-interacting protein (TOLLIP) is an inhibitory adaptor protein within the toll-like receptor (TLR) pathway, a part of the innate immune system that recognizes structurally conserved molecular patterns of microbial pathogens, leading to an inflammatory immune response. METHODS: In order to detect a possible role of TOLLIP variation in the pathogenesis of AD, we screened the entire coding sequence of the TOLLIP gene by SSCP in 50 AD patients. We identified an amino acid exchange in exon 6 (Ala222Ser) and a synonymous variation in exon 4 (Pro139Pro). Subsequently, these two variations and four additional non-coding polymorphisms (-526 C/G, two polymorphisms in intron 1 and one in the 3'UTR) were genotyped in 317 AD patients and 224 healthy controls. RESULTS: The -526G allele showed borderline association with AD in our cohort (p = 0.012; significance level after correction for multiple testing 0.0102). Haplotype analysis did not yield additional information. Evaluation of mRNA expression by quantitative real-time polymerase chain reaction in six probands with the CC and six with the GG genotype at the -526 C/G locus did not reveal significant differences between genotypes. CONCLUSION: Variation in the TOLLIP gene may play a role in the pathogenesis of AD. Yet, replication studies in other cohorts and populations are warranted to confirm these association results

Detecting autozygosity through runs of homozygosity: A comparison of three autozygosity detection algorithms

<p>Abstract</p> <p>Background</p> <p>A central aim for studying runs of homozygosity (ROHs) in genome-wide SNP data is to detect the effects of autozygosity (stretches of the two homologous chromosomes within the same individual that are identical by descent) on phenotypes. However, it is unknown which current ROH detection program, and which set of parameters within a given program, is optimal for differentiating ROHs that are truly autozygous from ROHs that are homozygous at the marker level but vary at unmeasured variants between the markers.</p> <p>Method</p> <p>We simulated 120 Mb of sequence data in order to know the true state of autozygosity. We then extracted common variants from this sequence to mimic the properties of SNP platforms and performed ROH analyses using three popular ROH detection programs, PLINK, GERMLINE, and BEAGLE. We varied detection thresholds for each program (e.g., prior probabilities, lengths of ROHs) to understand their effects on detecting known autozygosity.</p> <p>Results</p> <p>Within the optimal thresholds for each program, PLINK outperformed GERMLINE and BEAGLE in detecting autozygosity from distant common ancestors. PLINK's sliding window algorithm worked best when using SNP data pruned for linkage disequilibrium (LD).</p> <p>Conclusion</p> <p>Our results provide both general and specific recommendations for maximizing autozygosity detection in genome-wide SNP data, and should apply equally well to research on whole-genome autozygosity burden or to research on whether specific autozygous regions are predictive using association mapping methods.</p

Fine-scale detection of population-specific linkage disequilibrium using haplotype entropy in the human genome

<p>Abstract</p> <p>Background</p> <p>The creation of a coherent genomic map of recent selection is one of the greatest challenges towards a better understanding of human evolution and the identification of functional genetic variants. Several methods have been proposed to detect linkage disequilibrium (LD), which is indicative of natural selection, from genome-wide profiles of common genetic variations but are designed for large regions.</p> <p>Results</p> <p>To find population-specific LD within small regions, we have devised an entropy-based method that utilizes differences in haplotype frequency between populations. The method has the advantages of incorporating multilocus association, conciliation with low allele frequencies, and independence from allele polarity, which are ideal for short haplotype analysis. The comparison of HapMap SNPs data from African and Caucasian populations with a median resolution size of ~23 kb gave us novel candidates as well as known selection targets. Enrichment analysis for the yielded genes showed associations with diverse diseases such as cardiovascular, immunological, neurological, and skeletal and muscular diseases. A possible scenario for a selective force is discussed. In addition, we have developed a web interface (ENIGMA, available at <url>http://gibk21.bse.kyutech.ac.jp/ENIGMA/index.html</url>), which allows researchers to query their regions of interest for population-specific LD.</p> <p>Conclusion</p> <p>The haplotype entropy method is powerful for detecting population-specific LD embedded in short regions and should contribute to further studies aiming to decipher the evolutionary histories of modern humans.</p