596 research outputs found

    Infection of wheat tissues by Fusarium pseudograminearum

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    Cooling glaciers in a warming climate since the Little Ice Age at Qaanaaq, northwest Kalaallit Nunaat (Greenland)

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    The centennial response of land-terminating glaciers in Greenland to climate change is largely unknown. Yet, such information is important to understand ongoing changes and for projecting the future evolution of Arctic subpolar glaciers, meltwater runoff, and sediment fluxes. This paper analyses the topography, geomorphology, and sedimentology of prominent moraine ridges and the proglacial areas of ice cap outlet glaciers on the Qaanaaq peninsula (Piulip Nunaa). We determine geometric changes of glaciers since the neoglacial maximum; the Little Ice Age (LIA), and we compare glacier behaviour during the LIA with that of the present day. There has been very little change in the rate of volume loss of each outlet glacier since the LIA compared with the rate between 2000 and 2019. However, the percentage of each glacier that is likely composed of cold-based ice has increased since the LIA, typically by 20%. The LIA moraines comprise subrounded, striated, and faceted clasts that evidence subglacial transport, and outwash plains, flutes, kames, and eskers that evidence subglacial motion and meltwater within temperate ice. Contrastingly, contemporary ice margins and their convex ice surfaces comprise pronounced primary foliation, ephemeral supraglacial drainage, sediment drapes from thrust plane fractures, and an absence of open crevasses and moulins. These calculations and observations together lead us to interpret that these outlet glaciers have transitioned towards an increasingly cold-based thermal regime despite a warming regional climate. Thermal regime transitions control glacier dynamics and therefore should be incorporated into glacier evolution models, especially where polythermal glaciers prevail and where climate is changing rapidly

    Highly efficient PCR assay to discriminate allelic DNA methylation status using whole genome amplification

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    <p>Abstract</p> <p>Background</p> <p>We previously developed a simple method termed <it>Hpa</it>II-<it>McrBC </it>PCR (HM-PCR) to discriminate allelic methylation status of the genomic sites of interest, and successfully applied it to a comprehensive analysis of CpG islands (CGIs) on human chromosome 21q. However, HM-PCR requires 200 ng of genomic DNA to examine one target site, thereby precluding its application to such samples that are limited in quantity.</p> <p>Findings</p> <p>We developed <it>Hpa</it>II-<it>McrBC </it>whole-genome-amplification PCR (HM-WGA-PCR) that uses whole-genome-amplified DNA as the template. HM-WGA-PCR uses only 1/100th the genomic template material required for HM-PCR. Indeed, we successfully analyzed 147 CGIs by HM-WGA-PCR using only ~300 ng of DNA, whereas previous HM-PCR study had required ~30 μg. Furthermore, we confirmed that allelic methylation status revealed by HM-WGA-PCR is identical to that by HM-PCR in every case of the 147 CGIs tested, proving high consistency between the two methods.</p> <p>Conclusions</p> <p>HM-WGA-PCR would serve as a reliable alternative to HM-PCR in the analysis of allelic methylation status when the quantity of DNA available is limited.</p

    Comparison of two normative paediatric gait databases

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    The availability of age-matched normative data is an essential component of clinical gait analyses. Comparison of normative gait databases is difficult due to the high-dimensionality and temporal nature of the various gait waveforms. The purpose of this study was to provide a method of comparing the sagittal joint angle data between two normative databases. We compared a modern gait database to the historical San Diego database using statistical classifiers developed by Tingley et al. (2002). Gait data were recorded from 60 children aged 1–13 years. A six-camera Vicon 512 motion analysis system and two force plates were utilized to obtain temporal-spatial, kinematic, and kinetic parameters during walking. Differences between the two normative data sets were explored using the classifier index scores, and the mean and covariance structure of the joint angle data from each lab. Significant differences in sagittal angle data between the two databases were identified and attributed to technological advances and data processing techniques (data smoothing, sampling, and joint angle approximations). This work provides a simple method of database comparison using trainable statistical classifiers

    Individualization as driving force of clustering phenomena in humans

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    One of the most intriguing dynamics in biological systems is the emergence of clustering, the self-organization into separated agglomerations of individuals. Several theories have been developed to explain clustering in, for instance, multi-cellular organisms, ant colonies, bee hives, flocks of birds, schools of fish, and animal herds. A persistent puzzle, however, is clustering of opinions in human populations. The puzzle is particularly pressing if opinions vary continuously, such as the degree to which citizens are in favor of or against a vaccination program. Existing opinion formation models suggest that "monoculture" is unavoidable in the long run, unless subsets of the population are perfectly separated from each other. Yet, social diversity is a robust empirical phenomenon, although perfect separation is hardly possible in an increasingly connected world. Considering randomness did not overcome the theoretical shortcomings so far. Small perturbations of individual opinions trigger social influence cascades that inevitably lead to monoculture, while larger noise disrupts opinion clusters and results in rampant individualism without any social structure. Our solution of the puzzle builds on recent empirical research, combining the integrative tendencies of social influence with the disintegrative effects of individualization. A key element of the new computational model is an adaptive kind of noise. We conduct simulation experiments to demonstrate that with this kind of noise, a third phase besides individualism and monoculture becomes possible, characterized by the formation of metastable clusters with diversity between and consensus within clusters. When clusters are small, individualization tendencies are too weak to prohibit a fusion of clusters. When clusters grow too large, however, individualization increases in strength, which promotes their splitting.Comment: 12 pages, 4 figure

    Research Letter: Mass Loss of Glaciers and Ice Caps Across Greenland Since the Little Ice Age

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    Glaciers and ice caps (GICs) are important contributors of meltwater runoff and to global sea level rise. However, knowledge of GIC mass changes is largely restricted to the last few decades. Here we show the extent of 5327 Greenland GICs during Little Ice Age (LIA) termination (1900) and reveal that they have fragmented into 5467 glaciers in 2001, losing at least 587 km3 from their ablation areas, equating to 499 Gt at a rate of 4.34 Gt yr−1. We estimate that the long-term mean mass balance in glacier ablation areas has been at least −0.18 to −0.22 m w.e. yr−1 and note the rate between 2000 and 2019 has been three times that. Glaciers with ice-marginal lakes formed since the LIA termination have had the fastest changing mass balance. Considerable spatial variability in glacier changes suggest compounding regional and local factors present challenges for understanding glacier evolution

    Human Pathogen Shown to Cause Disease in the Threatened Eklhorn Coral Acropora palmata

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    Coral reefs are in severe decline. Infections by the human pathogen Serratia marcescens have contributed to precipitous losses in the common Caribbean elkhorn coral, Acropora palmata, culminating in its listing under the United States Endangered Species Act. During a 2003 outbreak of this coral disease, called acroporid serratiosis (APS), a unique strain of the pathogen, Serratia marcescens strain PDR60, was identified from diseased A. palmata, human wastewater, the non-host coral Siderastrea siderea and the corallivorous snail Coralliophila abbreviata. In order to examine humans as a source and other marine invertebrates as vectors and/or reservoirs of the APS pathogen, challenge experiments were conducted with A. palmata maintained in closed aquaria to determine infectivity of strain PDR60 from reef and wastewater sources. Strain PDR60 from wastewater and diseased A. palmata caused disease signs in elkhorn coral in as little as four and five days, respectively, demonstrating that wastewater is a definitive source of APS and identifying human strain PDR60 as a coral pathogen through fulfillment of Koch's postulates. A. palmata inoculated with strain PDR60 from C. abbreviata showed limited virulence, with one of three inoculated fragments developing APS signs within 13 days. Strain PDR60 from non-host coral S. siderea showed a delayed pathogenic effect, with disease signs developing within an average of 20 days. These results suggest that C. abbreviata and non-host corals may function as reservoirs or vectors of the APS pathogen. Our results provide the first example of a marine “reverse zoonosis” involving the transmission of a human pathogen (S. marcescens) to a marine invertebrate (A. palmata). These findings underscore the interaction between public health practices and environmental health indices such as coral reef survival
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