Multimodality in the Science Classroom: A Focus on Multimedia Representations and How Students Learn

The element of active student engagement is one crucial facet to effective pedagogy. The use of technology and other media in the classroom has been researched but the impact of its efficacy is still in question. The fusion of technology into students’ social lives is undeniably on the rise and this mode along with other complementary media has the potential to positively impact both student engagement and learning, as exposed here through the vehicle of science instruction

Biotechnology for the Environment, A Report on the Joint United States - European Union Celebration of a Decade of Environmental Biotechnology Exchange Activities for Early Career Scientists, Project ID: 0011751

The joint EU-US Task Force on Environmental Biotechnology held a workshop entitled, 'A Celebration of a Decade of Environmental Biotechnology Exchange Activities' on October 17, 2005 in Brussels, Belgium. This was a fitting venue since Brussels was where the EU-US transatlantic initiative originated. The workshop brought together former trainees who are currently active in the field of environmental biotechnology in order to (1) assess the impact of the past training activities; (2) to promote further collaborations; and (3) to highlight working group and task force activities in this field. Presentations by the early career scientists filled the meeting day (see Appendix I and II for meeting agenda and abstract book, respectively). Task Force members chaired the various sessions. An additional poster session provided an opportunity for more intensive scientific exchange. The day culminated with a formal dinner and gathering of all participants. Agencies supporting the activities included DOE, USDA and NSF. Funds received from the DOE were exhausted and USDA and NSF allowed the Task Force to use unexpended monies (via no cost extensions) to facilitate future fellowship exchange activities. Over the past ten years, there has been a high level of sensitivity for working collaboratively with European colleagues. This philosophy simply pervades each and every activity of the EU-US Task Force. Realistically, this means that there is a careful balance between the US and EU participation in all functions. The Brussels 'Celebration' workshop was no exception. The organizers anticipated funding more former U.S. trainees than actually attended the workshop and raised the necessary funds to accomplish this goal. However, the number of U.S. attendees needed to be tempered since the financial resources for our EU counterparts proved more difficult to obtain. In order to maintain the scholarly and political balance on the program of events, fewer U.S. attendees were invited. Details of the expenditure of DOE funds are provided in the Table 1. As indicated in the original proposal, funds were used to support both past trainees (Treves, Leigh, Buchan, Bender, Perez-Jimenez, Becker, and Methe) as well as Task Force members (Zylstra, Suflita, Wall). The general assessment by the trainees was that the past Task Force activities were crucial to their development as scientists. The prevailing feeling was that they wished that more individuals could profit from similar experiences. There was also a high degree of enthusiasm for the trainees to get involved in some way with the Task Force activities. That is, the celebration lead to the organization of our former trainees to serve in an advisory capacity for future endeavors. In addition, the gathering served as an opportunity to plan for another two week environmental biotechnology course at Rutgers

Biotechnology for the Environment

Joint US-European Community Pilot Program support for short-term exchanges of early career scientists

The influence of nitrate on microbial processes in oil industry production waters

Sulfide accumulation due to bacterial sulfate reduction is responsible for a number of serious problems in the oil industry. Among the strategies to control the activity of sulfate -reducing bacteria ( SRB ) is the use of nitrate, which can exhibit a variety of effects. We investigated the relevance of this approach to souring oil fields in Oklahoma and Alberta in which water flooding is used to enhance oil recovery. SRB and nitrate -reducing bacteria ( NRB ) were enumerated in produced waters from both oil fields. In the Oklahoma field, the rates of sulfate reduction ranged from 0.05 to 0.16 M S day À 1 at the wellheads, and an order of magnitude higher at the oil -water separator. Sulfide production was greatest in the water storage tanks in the Alberta field. Microbial counts alone did not accurately reflect the potential for microbial activities. The majority of the sulfide production appeared to occur after the oil was pumped aboveground, rather than in the reservoir. Laboratory experiments showed that adding 5 and 10 mM nitrate to produced waters from the Oklahoma and Alberta oil fields, respectively, decreased the sulfide content to negligible levels and increased the numbers of NRB. This work suggests that sulfate reduction control measures can be concentrated on aboveground facilities, which will decrease the amount of sulfide reinjected into reservoirs during the disposal of oil field production waters

GeoChip-based Analysis of Groundwater Microbial Diversity in Norman Landfill

The Norman Landfill is a closed municipal solid waste landfill located on an alluvium associated with the Canadian River in Norman, Oklahoma. It has operated as a research site since 1994 because it is typical of many closed landfill sites across the U.S. Leachate from the unlined landfill forms a groundwater plume that extends downgradient approximately 250 m from the landfill toward the Canadian River. To investigate the impact of the landfill leachate on the diversity and functional structure of microbial communities, groundwater samples were taken from eight monitoring wells at a depth of 5m, and analyzed using a comprehensive functional gene array covering about 50,000 genes involved in key microbial processes, such as biogeochemical cycling of C, N, P, and S, and bioremediation of organic contaminants and metals. Wells are located within a transect along a presumed flow path with different distances to the center of the leachate plume. Our analyses showed that microbial communities were obviously impacted by the leachate-component from the landfill. The number of genes detected and microbial diversity indices in the center (LF2B) and its closest (MLS35) wells were significantly less than those detected in other more downgradient wells, while no significant changes were observed in the relative abundance (i.e., percentage of each gene category) for most gene categories. However, the microbial community composition or structure of the landfill groundwater did not clearly show a significant correlation with the distance from well LF2B. Burkholderia sp. and Pseudomonas sp. were found to be the dominant microbial populations detected in all wells, while Bradyrhizobium sp. and Ralstonia sp. were dominant populations for seven wells except LF2B. In addition, Mantel test and canonical correspondence analysis (CCA) indicate that pH, sulfate, ammonia nitrogen and dissolved organic carbon (DOC) have significant effects on the microbial community structure. The results suggest that the leachate from unlined landfills significantly impact the structures of groundwater microbial communities, and that more distal wells recover by natural attenuation

Volatile organic acids and microbial processes in the Yegua formation, east-central Texas

Geochemical and microbiological evidence indicates that viable microorganisms produce and consume volatile organic acids (VOA) in the Yegua formation. Acetic and propionic acid concentrations in mudstones range from 200 to 1270 and 20 to 38 nmol·gdw-1 respectively, whereas concentrations in sands are 50±200 and less than 20 nmol·gdw-1. VOA concentrations in sediments and in laboratory incubations suggest net production of VOAs by microorganisms in mudstones, and net consumption of VOAs by SO4 reducing bacteria (SRB) in sands. Notably, SRB activity is mostly confined to aquifer sands. Vertical diffusion and advection were modeled to estimate acetic acid transport from aquitard to aquifer. Assuming that SRB completely respire the acetic acid transported into the aquifer (3.2 µmol·l-1·m·a-1), the CO2 production rate in the aquifer sands is 5.3 µmol·l-1·m·a-1. This slow mineralization rate of in situ organic matter is within the range for deep aquifers, and probably accounts for the long-term survival of microorganisms in oligotrophic environments. Finally, the microbial communities in Yegua sediments appear to exhibit a loose commensalism, with microorganisms in aquitards providing VOAs for respiratory processes (i.e., SO4 reduction) in aquifers. © 2000 Elsevier Science Ltd. All rights reserved

Heparan Sulfate Domains Required for Fibroblast Growth Factor 1 and 2 Signaling through Fibroblast Growth Factor Receptor 1c

A small library of well defined heparan sulfate (HS) polysaccharides was chemoenzymatically synthesized and used for a detailed structure-activity study of fibroblast growth factor (FGF) 1 and FGF2 signaling through FGF receptor (FGFR) 1c. The HS polysaccharide tested contained both undersulfated (NA) domains and highly sulfated (NS) domains as well as very well defined non-reducing termini. This study examines differences in the HS selectivity of the positive canyons of the FGF12-FGFR1c2 and FGF22-FGFR1c2 HS binding sites of the symmetric FGF2-FGFR2-HS2 signal transduction complex. The results suggest that FGF12-FGFR1c2 binding site prefers a longer NS domain at the non-reducing terminus than FGF22-FGFR1c2. In addition, FGF22-FGFR1c2 can tolerate an HS chain having an N-acetylglucosamine residue at its non-reducing end. These results clearly demonstrate the different specificity of FGF12-FGFR1c2 and FGF22-FGFR1c2 for well defined HS structures and suggest that it is now possible to chemoenzymatically synthesize precise HS polysaccharides that can selectively mediate growth factor signaling. These HS polysaccharides might be useful in both understanding and controlling the growth, proliferation, and differentiation of cells in stem cell therapies, wound healing, and the treatment of cancer

Ground-State Transcriptional Requirements for Skin-Derived Precursors

Skin-derived precursors (SKPs) are an attractive stem cell model for cell-based therapies. SKPs can be readily generated from embryonic and adult mice and adult humans, exhibit a high degree of multipotency, and have the potential to serve as a patient autologous stem cell. The advancement of these cells toward therapeutic use depends on the ability to control precisely the self-renewal and differentiation of SKPs. Here we show that two well-known stem cell factors, Foxd3 and Sox2, are critical regulators of the stem cell properties of SKPs. Deletion of Foxd3 completely abolishes the sphere-forming potential of these cells. In the absence of Sox2, SKP spheres can be formed, but with reduced size and frequency. Our results provide entry points into the gene regulatory networks dictating SKP behavior, and pave the way for future studies on a therapeutically relevant stem cell

Fibroblast Growth Factor Signaling Mediates Pulmonary Endothelial Glycocalyx Reconstitution

The endothelial glycocalyx is a heparan sulfate (HS)-rich endovascular structure critical to endothelial function. Accordingly, endothelial glycocalyx degradation during sepsis contributes to tissue edema and organ injury. We determined the endogenous mechanisms governing pulmonary endothelial glycocalyx reconstitution, and if these reparative mechanisms are impaired during sepsis. We performed intravital microscopy of wild-type and transgenic mice to determine the rapidity of pulmonary endothelial glycocalyx reconstitution after nonseptic (heparinase-III mediated) or septic (cecal ligation and puncture mediated) endothelial glycocalyx degradation. We used mass spectrometry, surface plasmon resonance, and in vitro studies of human and mouse samples to determine the structure of HS fragments released during glycocalyx degradation and their impact on fibroblast growth factor receptor (FGFR) 1 signaling, a mediator of endothelial repair. Homeostatic pulmonary endothelial glycocalyx reconstitution occurred rapidly after nonseptic degradation and was associated with induction of the HS biosynthetic enzyme, exostosin (EXT)-1. In contrast, sepsis was characterized by loss of pulmonary EXT1 expression and delayed glycocalyx reconstitution. Rapid glycocalyx recovery after nonseptic degradation was dependent upon induction of FGFR1 expression and was augmented by FGF-promoting effects of circulating HS fragments released during glycocalyx degradation. Although sepsis-released HS fragments maintained this ability to activate FGFR1, sepsis was associated with the downstream absence of reparative pulmonary endothelial FGFR1 induction. Sepsis may cause vascular injury not only via glycocalyx degradation, but also by impairing FGFR1/EXT1-mediated glycocalyx reconstitution