321 research outputs found
Characteristics of Si(111) surface with embedded C84molecules
A monolayer of fullerene molecules on Si(111) surfaces is fabricated in an ultrahigh vacuum chamber through a controlled self-assembly process. The characteristics of self-assembled Si(111) surfaces, including supramolecular structures, electronic density of states, the quantum confinement effect, field emission features, and optoelectronical properties with embedded C84 are determined by the use of an ultrahigh vacuum scanning probe microscope. The results revealed that such a silicon surface with embedded C84 has a wide band gap of [similar]3.4 eV, high emission efficiency and low turn-on voltage, all of which are crucial to nano-electronics, optoelectronics, and the fabrication of semiconductor carbide. The measured data derived from photoluminescence emission experiments further confirm the corresponding band gap value obtained from IâV curves. The theoretical results from first-principles calculations for the field enhancement factor are compared with experimental measurements
Signature Evaluation Tool (SET): a Java-based tool to evaluate and visualize the sample discrimination abilities of gene expression signatures
ON THE MERITS OF VOXEL-BASED MORPHOMETRIC PATH-ANALYSIS FOR INVESTIGATING VOLUMETRIC MEDIATION OF A TOXICANT\u27S INFLUENCE ON COGNITIVE FUNCTION
We previously showed that lifetime cumulative lead dose, measured as lead concentration in the tibia bone by X-ray fluorescence, was associated with persistent and progressive declines in cognitive function and with decreases in MRI-based brain volumes in former lead workers. Moreover, larger region-specific brain volumes were associated with better cognitive function. These findings motivated us to explore a novel application of path analysis to evaluate effect mediation. Voxel-wise path analysis, at face value, represents the natural evolution of voxel-based morphometry methods to answer questions of mediation. Application of these methods to the former lead worker data demonstrated potential limitations in this approach where there was a tendency for results to be strongly biased towards the null hypothesis (lack of mediation). Moreover, a complimentary analysis using anatomically-derived regions of interest volumes yielded opposing results, suggesting evidence of mediation. Specifically, in the ROI-based approach, there was evidence that the association of tibia lead with function in three cognitive domains was mediated through the volumes of total brain, frontal gray matter, and/or possibly cingulate. A simulation study was conducted to investigate whether the voxel-wise results arose from an absence of localized mediation, or more subtle defects in the methodology. The simulation results showed the same null bias evidenced as seen in the lead workers data. Both the lead worker data results and the simulation study suggest that a null-bias in voxel-wise path analysis limits its inferential utility for producing confirmatory results
Molecular and clinical analyses of 84 patients with tuberous sclerosis complex
BACKGROUND: Tuberous sclerosis complex (TSC) is an autosomal dominant disease characterized by the development of multiple hamartomas in many internal organs. Mutations in either one of 2 genes, TSC1 and TSC2, have been attributed to the development of TSC. More than two-thirds of TSC patients are sporadic cases, and a wide variety of mutations in the coding region of the TSC1 and TSC2 genes have been reported. METHODS: Mutational analysis of TSC1 and TSC2 genes was performed in 84 Taiwanese TSC families using denaturing high-performance liquid chromatography (DHPLC) and direct sequencing. RESULTS: Mutations were identified in a total of 64 (76 %) cases, including 9 TSC1 mutations (7 sporadic and 2 familial cases) and 55 TSC2 mutations (47 sporadic and 8 familial cases). Thirty-one of the 64 mutations found have not been described previously. The phenotype association is consistent with findings from other large studies, showing that disease resulting from mutations to TSC1 is less severe than disease due to TSC2 mutation. CONCLUSION: This study provides a representative picture of the distribution of mutations of the TSC1 and TSC2 genes in clinically ascertained TSC cases in the Taiwanese population. Although nearly half of the mutations identified were novel, the kinds and distribution of mutation were not different in this population compared to that seen in larger European and American studies
Albuminâ bilirubin gradeâ based nomogram of the BCLC system for personalized prognostic prediction in hepatocellular carcinoma
Background & AimsThe prognostic accuracy of individual hepatocellular carcinoma (HCC) patient in each Barcelona Clinic Liver Cancer (BCLC) stage is unclear. We aimed to develop and validate an albuminâ bilirubin (ALBI) gradeâ based nomogram of BCLC to estimate survival for individual HCC patient.MethodsBetween 2002 and 2016, 3690 patients with newly diagnosed HCC were prospectively enrolled and retrospectively analysed. Patients were randomly split into derivation and validation cohort by 1:1 ratio. Multivariate Cox proportional hazards model was used to generate the nomogram from tumour burden, ALBI grade and performance status (PS). The concordance index and calibration plot were determined to evaluate the performance of this nomogram.ResultsBeta coefficients from the Cox model were used to assign nomogram points to different degrees of tumour burden, ALBI grade and PS. The scores of the nomogram ranged from 0 to 24, and were used to predict 3â and 5â year patient survival. The concordance index of this nomogram was 0.77 (95% confidence interval [CI]: 0.71â 0.81) in the derivation cohort and 0.76 (95% CI: 0.71â 0.81) in the validation cohort. The calibration plots to predict both 3â and 5â year survival rate well matched with the 45â degree ideal line for both cohorts, except for ALBIâ based BCLC stage 0 in the validation cohort.ConclusionsThe proposed ALBIâ based nomogram of BCLC system is a simple and feasible strategy in the precision medicine era. Our data indicate it is a straightforward and userâ friendly prognostic tool to estimate the survival of individual HCC patient except for very early stage patients.Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/153250/1/liv14249_am.pdfhttps://deepblue.lib.umich.edu/bitstream/2027.42/153250/2/liv14249.pd
AMiBA: scaling relations between the integrated Compton-y and X-ray derived temperature, mass, and luminosity
We investigate the scaling relations between the X-ray and the thermal
Sunyaev-Zel'dovich Effect (SZE) properties of clusters of galaxies, using data
taken during 2007 by the Y.T. Lee Array for Microwave Background Anisotropy
(AMiBA) at 94 GHz for the six clusters A1689, A1995, A2142, A2163, A2261, and
A2390. The scaling relations relate the integrated Compton-y parameter Y_{2500}
to the X-ray derived gas temperature T_{e}, total mass M_{2500}, and bolometric
luminosity L_X within r_{2500}. Our results for the power-law index and
normalization are both consistent with the self-similar model and other studies
in the literature except for the Y_{2500}-L_X relation, for which a physical
explanation is given though further investigation may be still needed. Our
results not only provide confidence for the AMiBA project but also support our
understanding of galaxy clusters.Comment: Accepted by ApJ; 8 pages, 3 figures, 5 table
AMiBA: Broadband Heterodyne CMB Interferometry
The Y. T. Lee Array for Microwave Background (AMiBA) has reported the first
science results on the detection of galaxy clusters via the Sunyaev Zel'dovich
effect. The science objectives required small reflectors in order to sample
large scale structures (20') while interferometry provided modest resolutions
(2'). With these constraints, we designed for the best sensitivity by utilizing
the maximum possible continuum bandwidth matched to the atmospheric window at
86-102GHz, with dual polarizations. A novel wide-band analog correlator was
designed that is easily expandable for more interferometer elements. MMIC
technology was used throughout as much as possible in order to miniaturize the
components and to enhance mass production. These designs will find application
in other upcoming astronomy projects. AMiBA is now in operations since 2006,
and we are in the process to expand the array from 7 to 13 elements.Comment: 10 pages, 6 figures, ApJ in press; a version with high resolution
figures available at
http://www.asiaa.sinica.edu.tw/~keiichi/upfiles/AMiBA7/mtc_highreso.pd
Mutation and Lineage Analysis of DNMT3A in BCR-ABL1-negative Chronic Myeloproliferative Neoplasms
SummaryIn addition to the JAK2 V617F mutation, somatic mutation in DNMT3A has been described in BCL-ABL1-negative myeloproliferative neoplasms (MPNs). We have screened for DNMT3A exon 23 mutations in 130 adult Taiwanese patients with chronic phase myeloproliferative neoplasms. Only one somatic DNMT3A R882H mutation was identified in one JAK2 V617F mutation-positive essential thrombocythemia patient (1/91, 1%). Both mutations were detected in the CD34+-, CD19+-, peripheral blood mononuclear cell- and granulocyte-enriched fractions, but were not detected in the CD3+-enriched fraction by lineage analysis. Our findings suggest that DNMT3A mutation is not prevalent in MPNs, and further study is needed to clarify its role in the molecular pathogenesis of myeloproliferative neoplasms
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