23,406 research outputs found

    Condensation cyclization reactions of electron deficient aromatics. 4: Tricyclic nitropropene nitronates from the reaction of phloroglucinol and cycloalkanones with sym-trinitrobenzene

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    Interesting similarities have been shown between the reactions of sym-trinitrobenzene with cycloalkanones, and with phloroglucinol. Previously unsuspected common intermediates have been shown to intervene. The structurally similar products in each case are tricyclic nitropropene nitronates. Protonation of these yields the corresponding nitronic acids in certain instances

    Molecular Basis for poly(A) RNP Architecture and Recognition by the Pan2-Pan3 Deadenylase

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    The stability of eukaryotic mRNAs is dependent on a ribonucleoprotein (RNP) complex of poly(A)-binding proteins (PABPC1/Pab1) organized on the poly(A) tail. This poly(A) RNP not only protects mRNAs from premature degradation but also stimulates the Pan2-Pan3 deadenylase complex to catalyze the first step of poly(A) tail shortening. We reconstituted this process in vitro using recombinant proteins and show that Pan2-Pan3 associates with and degrades poly(A) RNPs containing two or more Pab1 molecules. The cryo-EM structure of Pan2-Pan3 in complex with a poly(A) RNP composed of 90 adenosines and three Pab1 protomers shows how the oligomerization interfaces of Pab1 are recognized by conserved features of the deadenylase and thread the poly(A) RNA substrate into the nuclease active site. The structure reveals the basis for the periodic repeating architecture at the 3' end of cytoplasmic mRNAs. This illustrates mechanistically how RNA-bound Pab1 oligomers act as rulers for poly(A) tail length over the mRNAs' lifetime.We would like to thank ... the MPIB cryo-EM, and core facilities ..

    124-Color Super-resolution Imaging by Engineering DNA-PAINT Blinking Kinetics

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    Optical super-resolution techniques reach unprecedented spatial resolution down to a few nanometers. However, efficient multiplexing strategies for the simultaneous detection of hundreds of molecular species are still elusive. Here, we introduce an entirely new approach to multiplexed super-resolution microscopy by designing the blinking behavior of targets with engineered binding frequency and duration in DNA-PAINT. We assay this kinetic barcoding approach in silico and in vitro using DNA origami structures, show the applicability for multiplexed RNA and protein detection in cells, and finally experimentally demonstrate 124-plex super-resolution imaging within minutes.We thank Martin Spitaler and the imaging facility of the MPI of Biochemistry for confocal imaging support

    Dynamics of few-body states in a medium

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    Strongly interacting matter such as nuclear or quark matter leads to few-body bound states and correlations of the constituents. As a consequence quantum chromodynamics has a rich phase structure with spontaneous symmetry breaking, superconductivity, condensates of different kinds. All this appears in many astrophysical scenarios. Among them is the formation of hadrns during the early stage of the Universe, the structure of a neutron star, the formation of nuclei during a supernova explosion. Some of these extreme conditions can be simulated in heavy ion colliders. To treat such a hot and dense system we use the Green function formalism of many-body theory. It turns out that a systematic Dyson expansion of the Green functions leads to modified few-body equations that are capable to describe phase transitions, condensates, cluster formation and more. These equations include self energy corrections and Pauli blocking. We apply this method to nonrelativistic and relativistic matter. The latter one is treated on the light front. Because of the medium and the inevitable truncation of space, the few-body dynamics and states depend on the thermodynamic parameters of the medium.Comment: 3 pages, 2 figures, talk presented at the 19th European Conference on Few-Body System

    Professionele aanspreeklikheid van ouditeure teenoor derdes op grond van nalatigheid

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    People in the professional occupations such as auditors, lawyers, architects and engineers have a duty to treat their clients with solicitude. This duty arises from the nature of their calling and from the professional service that they offer their clients. This has led to the situation where members of the professions have increasingly been held responsible for damage suffered by third parties as a result of the neglect of their professionally inherent obligation of solicitude. Fraud scandals, such as those of Enron in the USA and Masterbond, PSC Guaranteed Growth and Tigon locally, have once again caused the focus to fall upon the professional responsibility of auditors.The question that is increasingly being asked is: when and under what circumstances will an auditor be held responsible towards a third party in his professional capacity for the negligent performance of his duties? For the purposes of this article, the focus will only be placed on the responsibility of the auditor on the grounds of his duty to report in terms of section 300 of the Companies Act. The distinctive rules and also the specific application of the general principles of delict in such cases are discussed in this article

    Testing of High Voltage Surge Protection Devices for Use in Liquid Argon TPC Detectors

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    In this paper we demonstrate the capability of high voltage varistors and gas discharge tube arrestors for use as surge protection devices in liquid argon time projection chamber detectors. The insulating and clamping behavior of each type of device is characterized in air (room temperature), and liquid argon (90~K), and their robustness under high voltage and high energy surges in cryogenic conditions is verified. The protection of vulnerable components in liquid argon during a 150 kV high voltage discharge is also demonstrated. Each device is tested for argon contamination and light emission effects, and both are constrained to levels where no significant impact upon liquid argon time projection chamber functionality is expected. Both devices investigated are shown to be suitable for HV surge protection applications in cryogenic detectors.Comment: 22 pages, 18 figures v2: reduced file size for journal submissio

    Approximate resonance states in the semigroup decomposition of resonance evolution

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    The semigroup decomposition formalism makes use of the functional model for C.0C_{.0} class contractive semigroups for the description of the time evolution of resonances. For a given scattering problem the formalism allows for the association of a definite Hilbert space state with a scattering resonance. This state defines a decomposition of matrix elements of the evolution into a term evolving according to a semigroup law and a background term. We discuss the case of multiple resonances and give a bound on the size of the background term. As an example we treat a simple problem of scattering from a square barrier potential on the half-line.Comment: LaTex 22 pages 3 figure
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