Integration of variable photosynthetic capacity into a biogeochemical model

2011 Fall.Includes bibliographical references.We integrated a photosynthetic sub-model into the daily Century model, DayCent, to improve the estimations of carbon fluxes at the Niwot Ridge LTER site; the new version is called DayCent-Photosyn. The photosynthetic sub-model, adapted from the SIPNET/PnET family of models, includes solar radiation and vapor pressure deficit controls on production, as well as temperature and water stress terms. A key feature we added to the base photosynthetic equations is the addition of a variable maximum net photosynthetic rate (Amax). We optimized the parameters controlling photosynthesis using a variation of the Metropolis-Hastings algorithm along with data-assimilation techniques. The model was optimized and validated against level 4 data available from the Ameriflux website using observed net ecosystem exchange (NEE) and estimated gross primary production (GPP) and ecosystem respiration (Re) values. The inclusion of a variable Amax rate greatly improved model performance (NEE RMSE = 0.63 gC m-2, AIC= 2099) versus a version with a single Amax parameter (NEE RMSE = 0.74 gC m-2, AIC= 3724). DayCent-Photosyn is able to capture the inter-annual and seasonal flux patterns, including the critical early season assimilation, but tends to overestimate yearly NEE uptake. The simulated influence of a variable Amax rate suggest a need for further studies on the process controls affecting the seasonal photosynthetic rates

The impact of diffusion on confined oscillated bubbly fluid

We consider the dynamics of monodisperse bubbly fluid confined by two plane solid walls and subjected to small-amplitude high-frequency transversal oscillations. The frequency these oscillations is assumed to be high in comparison with typical relaxation times for a single bubble, but comparable with the eigenfrequency of volume oscillations. A time-averaged description accounting for mutual coupling of the phases and the diffusivity of bubbles is applied. We find nonuniform steady states with the liquid quiescent on average. At relatively low frequencies accumulation of bubbles either at the walls or in planes oriented parallel to the walls is detected. These one-dimensional states are shown to be unstable. At relatively high frequencies the bubbles accumulate at the central plane and the solution is stable.Comment: 12 pages, 9 figures, submitted to Phys. Fluid

Linear oscillations of a compressible hemispherical bubble on a solid substrate

The linear natural and forced oscillations of a hemispherical bubble on a solid substrate are under theoretical consideration. The contact line dynamics is taken into account with the Hocking condition, which eventually leads to interaction of the shape and volume oscillations. Resonant phenomena, mostly pronounced for the bubble with the fixed contact line or with the fixed contact angle, are found out. The limiting case of weakly compressible bubble is studied. The general criterion identifying whether the compressibility of a bubble can be neglected is obtained.Comment: new slightly extended version with some minor changes, added journal reference and DOI information; 12 pages, 8 figures, published in Physics of Fluid

Modeling Inter-trial Variability of Saccade Trajectories: Effects of Lesions of the Oculomotor Part of the Fastigial Nucleus

This study investigates the inter-trial variability of saccade trajectories observed in five rhesus macaques (Macaca mulatta). For each time point during a saccade, the inter-trial variance of eye position and its covariance with eye end position were evaluated. Data were modeled by a superposition of three noise components due to 1) planning noise, 2) signal-dependent motor noise, and 3) signal-dependent premotor noise entering within an internal feedback loop. Both planning noise and signal-dependent motor noise (together called accumulating noise) predict a simple S-shaped variance increase during saccades, which was not sufficient to explain the data. Adding noise within an internal feedback loop enabled the model to mimic variance/covariance structure in each monkey, and to estimate the noise amplitudes and the feedback gain. Feedback noise had little effect on end point noise, which was dominated by accumulating noise. This analysis was further extended to saccades executed during inactivation of the caudal fastigial nucleus (cFN) on one side of the cerebellum. Saccades ipsiversive to an inactivated cFN showed more end point variance than did normal saccades. During cFN inactivation, eye position during saccades was statistically more strongly coupled to eye position at saccade end. The proposed model could fit the variance/covariance structure of ipsiversive and contraversive saccades. Inactivation effects on saccade noise are explained by a decrease of the feedback gain and an increase of planning and/or signal-dependent motor noise. The decrease of the fitted feedback gain is consistent with previous studies suggesting a role for the cerebellum in an internal feedback mechanism. Increased end point variance did not result from impaired feedback but from the increase of accumulating noise. The effects of cFN inactivation on saccade noise indicate that the effects of cFN inactivation cannot be explained entirely with the cFN's direct connections to the saccade-related premotor centers in the brainstem

A CPH-Like Picture in Two Patients with an Orbitocavernous Sinus Syndrome

Two patients with retroorbital pain syndromes with or without paresis of cranial nerves developed weeks after ipsilateral headache resembling chronic paroxysmal hemicrania (CPH) but without autonomic features. These findings might support the hypothesis that CPH may be caused by a pathological process in the region of the cavernous sinus, as has been proposed for the Tolosa-Hunt syndrome (THS)

‘‘Lozenge’’ contour plots in scattering from polymer networks

We present a consistent explanation for the appearance of “lozenge” shapes in contour plots of the two dimensional scattering intensity from stretched polymer networks. By explicitly averaging over quenched variables in a tube model, we show that lozenge patterns arise as a result of chain material that is not directly deformed by the stretch. We obtain excellent agreement with experimental data

Treatment of chronic migraine with transcutaneous stimulation of the auricular branch of the vagal nerve (auricular t-VNS):a randomized, monocentric clinical trial

Background Aim of the study was assessment of efficacy and safety of transcutaneous stimulation of the auricular branch of the vagal nerve (t-VNS) in the treatment of chronic migraine. Methods A monocentric, randomized, controlled, double-blind study was conducted. After one month of baseline, chronic migraine patients were randomized to receive 25 Hz or 1 Hz stimulation of the sensory vagal area at the left ear by a handhold battery driven stimulator for 4 h/day during 3 months. Headache days per 28 days were compared between baseline and the last month of treatment and the number of days with acute medication was recorded The Headache Impact Test (HIT-6) and the Migraine Disability Assessment (MIDAS) questionnaires were used to assess headache-related disability. Results Of 46 randomized patients, 40 finished the study (per protocol). In the per protocol analysis, patients in the 1 Hz group had a significantly larger reduction in headache days per 28 days than patients in the 25 Hz group (−7.0 ± 4.6 vs. −3.3 ± 5.4 days, p = 0.035). 29.4 % of the patients in the 1 Hz group had a ≥50 % reduction in headache days vs. 13.3 % in the 25 Hz group. HIT-6 and MIDAS scores were significantly improved in both groups, without group differences. There were no serious treatment-related adverse events. Conclusion Treatment of chronic migraine by t-VNS at 1 Hz was safe and effective. The mean reduction of headache days after 12 weeks of treatment exceeded that reported for other nerve stimulating procedures