REGULATION OF CARBON SEQUESTRATION AND WATER USE IN A OZARK FOREST: PROPOSING A NEW STRATEGICALLY LOCATED AMERIFLUX TOWER SITE IN MISSOURI

by June 14, 2004, the MOFLUX site was fully instrumented and data streams started to flow. A primary accomplished deliverable for the project period was the data streams of CO{sub 2} and water vapor fluxes and numerous meteorological variables (from which prepared datasets have been submitted to the AmeriFlux data archive for 2004-2006, Additionally, measurements of leaf biochemistry and physiology, biomass inventory, tree allometry, successional trends other variables were obtained

REGULATION OF CARBON SEQUESTRATION AND WATER USE IN A OZARK FOREST: PROPOSING A NEW STRATEGICALLY LOCATED AMERIFLUX TOWER SITE IN MISSOURI

by June 14, 2004, the MOFLUX site was fully instrumented and data streams started to flow. A primary accomplished deliverable for the project period was the data streams of CO{sub 2} and water vapor fluxes and numerous meteorological variables (from which prepared datasets have been submitted to the AmeriFlux data archive for 2004-2006, Additionally, measurements of leaf biochemistry and physiology, biomass inventory, tree allometry, successional trends other variables were obtained

The fundamental equation of eddy covariance and its application in flux measurements

A fundamental equation of eddy covariance (FQEC) is derived that allows the net ecosystem exchange (NEE) N̅s of a specified atmospheric constituent s to be measured with the constraint of conservation of any other atmospheric constituent (e.g. N2, argon, or dry air). It is shown that if the condition │N̅s│ ˃˃ │X̅s│ │N̅co2│is true, the conservation of mass can be applied with the assumption of no net ecosystem source or sink of dry air and the FQEC is reduced to the following equation and its approximation for horizontally homogeneous mass fluxes: N̅s = c̅dw’X’s│h + ∫h0 c̅d(z) ∂Xs/∂t dz + ∫h0 [X̅s (z)- X̅s (h)] ∂̅c̅d̅/∂t dz = c̅d̅(h) {w̅’X̅’s│h + ∫h0 ∂Xs/∂t dz}. Here w is vertical velocity, c molar density, t time, h eddy flux measurement height, z vertical distance and Xs= cs/cd molar mixing ratio relative to dry air. Subscripts s, d and CO2 are for the specified constituent, dry air and carbon dioxide, respectively. Primes and overbars refer to turbulent fluctuations and time averages, respectively. This equation and its approximation are derived for non-steady state conditions that build on the steady-state theory of Webb, Pearman and Leuning (WPL; Webb et al., 1980. Quart. J. R. Meteorol. Soc. 106, 85–100), theory that is widely used to calculate the eddy fluxes of CO2 and other trace gases. The original WPL constraint of no vertical flux of dry air across the EC measurement plane, which is valid only for steady-state conditions, is replaced with the requirement of no net ecosystem source or sink of dry air for non-steady state conditions. This replacement does not affect the ‘eddy flux’ term c̅d̅w̅’X̅’s s but requires the change in storage to be calculated as the ‘effective change in storage’ as follows: ∫h0 ∂̅c̅s̅/ ∂̅t̅ dz – X̅s(h) ∫h0 ∂̅c̅d̅/∂t dz = ∫h0 c̅d̅ (z) - ∂Xs/∂t dz + ∫h0 [X̅s (z)- X̅s (h)] ∂̅c̅d̅/∂t dz= c̅d (h) ∫h0 ∂Xs/∂t dz. Without doing so, significant diurnal and seasonal biases may occur. We demonstrate that the effective change in storage can be estimated accurately with a properly designed profile of mixing ratio measurements made at multiple heights. However further simplification by using a single measurement at the EC instrumentation height is shown to produce substantial biases. It is emphasized that an adequately designed profile system for measuring the effective change in storage in proper units is as important as the eddy flux term for determining NEE

A new paradigm of quantifying ecosystem stress through chemical signatures

Stress-induced emissions of biogenic volatile organic compounds (VOCs) from terrestrial eco- systems may be one of the dominant sources of VOC emissions worldwide. Understanding the ecosystem stress response could reveal how ecosystems will respond and adapt to climate change and, in turn, quan- tify changes in the atmospheric burden of VOC oxidants and secondary organic aerosols. Here, we argue, based on preliminary evidence from several opportunistic measurement sources, that chemical signatures of stress can be identified and quantified at the ecosystem scale. We also outline future endeavors that we see as next steps toward uncovering quantitative signatures of stress, including new advances in both VOC data collection and analysis of "big data.

The fundamental equation of eddy covariance and its application in flux measurements

A fundamental equation of eddy covariance (FQEC) is derived that allows the net ecosystem exchange (NEE) N̅s of a specified atmospheric constituent s to be measured with the constraint of conservation of any other atmospheric constituent (e.g. N2, argon, or dry air). It is shown that if the condition │N̅s│ ˃˃ │X̅s│ │N̅co2│is true, the conservation of mass can be applied with the assumption of no net ecosystem source or sink of dry air and the FQEC is reduced to the following equation and its approximation for horizontally homogeneous mass fluxes: N̅s = c̅dw’X’s│h + ∫h0 c̅d(z) ∂Xs/∂t dz + ∫h0 [X̅s (z)- X̅s (h)] ∂̅c̅d̅/∂t dz = c̅d̅(h) {w̅’X̅’s│h + ∫h0 ∂Xs/∂t dz}. Here w is vertical velocity, c molar density, t time, h eddy flux measurement height, z vertical distance and Xs= cs/cd molar mixing ratio relative to dry air. Subscripts s, d and CO2 are for the specified constituent, dry air and carbon dioxide, respectively. Primes and overbars refer to turbulent fluctuations and time averages, respectively. This equation and its approximation are derived for non-steady state conditions that build on the steady-state theory of Webb, Pearman and Leuning (WPL; Webb et al., 1980. Quart. J. R. Meteorol. Soc. 106, 85–100), theory that is widely used to calculate the eddy fluxes of CO2 and other trace gases. The original WPL constraint of no vertical flux of dry air across the EC measurement plane, which is valid only for steady-state conditions, is replaced with the requirement of no net ecosystem source or sink of dry air for non-steady state conditions. This replacement does not affect the ‘eddy flux’ term c̅d̅w̅’X̅’s s but requires the change in storage to be calculated as the ‘effective change in storage’ as follows: ∫h0 ∂̅c̅s̅/ ∂̅t̅ dz – X̅s(h) ∫h0 ∂̅c̅d̅/∂t dz = ∫h0 c̅d̅ (z) - ∂Xs/∂t dz + ∫h0 [X̅s (z)- X̅s (h)] ∂̅c̅d̅/∂t dz= c̅d (h) ∫h0 ∂Xs/∂t dz. Without doing so, significant diurnal and seasonal biases may occur. We demonstrate that the effective change in storage can be estimated accurately with a properly designed profile of mixing ratio measurements made at multiple heights. However further simplification by using a single measurement at the EC instrumentation height is shown to produce substantial biases. It is emphasized that an adequately designed profile system for measuring the effective change in storage in proper units is as important as the eddy flux term for determining NEE

Simultaneous Determination of the Predominant Hyperforins and Hypericins in St. John's Wort (Hypericum perforatum L.) by Liquid Chromatography

Hypericin and hyperforin are believed to be among the active constituents in common St. John's wort (Hypericum perforatum L.). Presently, dietary supplements are generally standardized to contain specified levels of hypericin and hyperforin, and the related compounds, pseudohypericin and adhyperforin. A rapid method was developed for simultaneous determination of these 4 active constituents by liquid chromatography (LC). A 1 g portion of dried, finely ground leaf/flower sample is extracted with 20 mL methanol for 2 h. A 0.6 mL aliquot of the crude extract is combined with 5.4 mL acetonitrile-methanol (9 + 1) and passed through a mixed solid-phase cleanup column. The eluate is examined by LC for hyperforin, adhyperforin, hypericin, and pseudohypericin on a Hypersil reversed-phase column by using simultaneous ultraviolet (284 nm) and fluorescence detection (excitation, 470 nm; emission, 590 nm). The compounds are easily separated isocratically within 8 min with a mobile phase of acetonitrile-aqueous 0.1M triethylammonium acetate (8 + 2). Average recoveries of hyperforin and adhyperforin were 101.9 and 98.4%, respectively, for 3 sample mixtures containing concentrations ranging from approximately 0.2 to 1.5% combined hyperforins per gram dry weight. Average relative standard deviation (RSD) values for hyperforin and adhyperforin for all 3 mixtures were 18.9 and 18.0%, respectively. Average recoveries of hypericin and pseudohypericin were 88.6 and 93.3% respectively, from 3 sample mixtures containing concentrations ranging from approximately 0.2 to 0.4% combined hypericins per gram dry weight. Average RSD values for hypericin and pseudohypericin for all 3 mixtures were 3.8 and 4.2%, respectively. C ommon St. John's wort (Hypericum perforatum L.) is a perennial species of the Hypericaceae family, native to Europe. Dietary supplements and other herbal preparations produced from the leaves and flowers of St. John's wort have gained popularity in the United States in recent years (1, 2). A recent overview of 23 controlled clinical trials concluded that St. John's wort was more effective than a placebo for the treatment of mild depression (3). Commercial extracts from the leaves and flowers are also being investigated for anticancer and antiviral activities (4). The predominant napthodianthrone derivatives, hypericin and pseudohypericin, and the phloroglucine derivatives, hyperforin and adhyperforin, are among the compounds presently being investigated for their biological activities. Standardized dietary supplements of St. John's wort currently contain from 0.3 to 0.5% hypericin(s), and/or approximately 3.0% hyperforin(s). In 1998, St. John's wort herbal products showed exceptional sales growth, increasing nearly 3000% from 1997 to 1998 (2). Several recent papers on the chemical analysis of St. John's wort have provided the means to measure many of the predominant chemical constituents from diluted, crude extracts (5-12). In general, samples were extracted and filtered, or liquid-liquid extraction was used to remove chlorophylls and other pigments. The use of mixed solid-phase (MSP) cleanup columns has been reported recently in the literature. Wilson and Romer (13) developed a proprietary cleanup column consisting of a mixture of reversed-phase, ion-exclusion, and ion-exchange packing materials used for cleanup of extracts of corn, cottonseed, rice, mixed feeds, and a variety of nuts in the determination of aflatoxins. Similarly, Tacke and Casper (14) developed a C 18 -alumina (1 + 3) MSP cleanup column for wheat extracts in the determination of deoxynivalenol. The following method was developed to provide a rapid, inexpensive, MSP cleanup with simultaneous determination of the 4 compounds of greatest current interest, hypericin, hyperforin, pseudohypericin, and adhyperforin from flower and leaf mixtures of St. John's wort

A MODIS Photochemical Reflectance Index (PRI) as an Estimator of Isoprene Emissions in a Temperate Deciduous Forest

The quantification of isoprene and monoterpene emissions at the ecosystem level with available models and field measurements is not entirely satisfactory. Remote-sensing techniques can extend the spatial and temporal assessment of isoprenoid fluxes. Detecting the exchange of biogenic volatile organic compounds (BVOCs) using these techniques is, however, a very challenging goal. Recent evidence suggests that a simple remotely sensed index, the photochemical reflectance index (PRI), which is indicative of light-use efficiency, relative pigment levels and excess reducing power, is a good indirect estimator of foliar isoprenoid emissions. We tested the ability of PRI to assess isoprenoid fluxes in a temperate deciduous forest in central USA throughout the entire growing season and under moderate and extreme drought conditions. We compared PRI time series calculated with MODIS bands to isoprene emissions measured with eddy covariance. MODIS PRI was correlated with isoprene emissions for most of the season, until emissions peaked. MODIS PRI was also able to detect the timing of the annual peak of emissions, even when it was advanced in response to drought conditions. PRI is thus a promising index to estimate isoprene emissions when it is complemented by information on potential emission. It may also be used to further improve models of isoprene emission under drought and other stress conditions. Direct estimation of isoprene emission by PRI is, however, limited, because PRI estimates LUE, and the relationship between LUE and isoprene emissions can be modified by severe stress conditions

A MODIS Photochemical Reflectance Index (PRI) as an Estimator of Isoprene Emissions in a Temperate Deciduous Forest

The quantification of isoprene and monoterpene emissions at the ecosystem level with available models and field measurements is not entirely satisfactory. Remote-sensing techniques can extend the spatial and temporal assessment of isoprenoid fluxes. Detecting the exchange of biogenic volatile organic compounds (BVOCs) using these techniques is, however, a very challenging goal. Recent evidence suggests that a simple remotely sensed index, the photochemical reflectance index (PRI), which is indicative of light-use efficiency, relative pigment levels and excess reducing power, is a good indirect estimator of foliar isoprenoid emissions. We tested the ability of PRI to assess isoprenoid fluxes in a temperate deciduous forest in central USA throughout the entire growing season and under moderate and extreme drought conditions. We compared PRI time series calculated with MODIS bands to isoprene emissions measured with eddy covariance. MODIS PRI was correlated with isoprene emissions for most of the season, until emissions peaked. MODIS PRI was also able to detect the timing of the annual peak of emissions, even when it was advanced in response to drought conditions. PRI is thus a promising index to estimate isoprene emissions when it is complemented by information on potential emission. It may also be used to further improve models of isoprene emission under drought and other stress conditions. Direct estimation of isoprene emission by PRI is, however, limited, because PRI estimates LUE, and the relationship between LUE and isoprene emissions can be modified by severe stress conditions

A MODIS Photochemical Reflectance Index (PRI) as an Estimator of Isoprene Emissions in a Temperate Deciduous Forest

The quantification of isoprene and monoterpene emissions at the ecosystem level with available models and field measurements is not entirely satisfactory. Remote-sensing techniques can extend the spatial and temporal assessment of isoprenoid fluxes. Detecting the exchange of biogenic volatile organic compounds (BVOCs) using these techniques is, however, a very challenging goal. Recent evidence suggests that a simple remotely sensed index, the photochemical reflectance index (PRI), which is indicative of light-use efficiency, relative pigment levels and excess reducing power, is a good indirect estimator of foliar isoprenoid emissions. We tested the ability of PRI to assess isoprenoid fluxes in a temperate deciduous forest in central USA throughout the entire growing season and under moderate and extreme drought conditions. We compared PRI time series calculated with MODIS bands to isoprene emissions measured with eddy covariance. MODIS PRI was correlated with isoprene emissions for most of the season, until emissions peaked. MODIS PRI was also able to detect the timing of the annual peak of emissions, even when it was advanced in response to drought conditions. PRI is thus a promising index to estimate isoprene emissions when it is complemented by information on potential emission. It may also be used to further improve models of isoprene emission under drought and other stress conditions. Direct estimation of isoprene emission by PRI is, however, limited, because PRI estimates LUE, and the relationship between LUE and isoprene emissions can be modified by severe stress conditions

A MODIS photochemical reflectance index (PRI) as an estimator of isoprene emissions in a temperate deciduous forest

The quantification of isoprene and monoterpene emissions at the ecosystem level with available models and field measurements is not entirely satisfactory. Remote-sensing techniques can extend the spatial and temporal assessment of isoprenoid fluxes. Detecting the exchange of biogenic volatile organic compounds (BVOCs) using these techniques is, however, a very challenging goal. Recent evidence suggests that a simple remotely sensed index, the photochemical reflectance index (PRI), which is indicative of light-use efficiency, relative pigment levels and excess reducing power, is a good indirect estimator of foliar isoprenoid emissions. We tested the ability of PRI to assess isoprenoid fluxes in a temperate deciduous forest in central USA throughout the entire growing season and under moderate and extreme drought conditions. We compared PRI time series calculated with MODIS bands to isoprene emissions measured with eddy covariance. MODIS PRI was correlated with isoprene emissions for most of the season, until emissions peaked. MODIS PRI was also able to detect the timing of the annual peak of emissions, even when it was advanced in response to drought conditions. PRI is thus a promising index to estimate isoprene emissions when it is complemented by information on potential emission. It may also be used to further improve models of isoprene emission under drought and other stress conditions. Direct estimation of isoprene emission by PRI is, however, limited, because PRI estimates LUE, and the relationship between LUE and isoprene emissions can be modified by severe stress conditions