Sand ripple volume generator for underwater acoustic models, a cellular automaton Monte-Carlo approach

Cellular automata have been successfully used to model the sand dynamics of aeolian dunes and ripples. The cellular automata Monte-Carlo model proposed in this paper expands the capabilities of cellular automata models to under water ripple formation introducing not a two dimensional matrix but two three dimensional volumes, being a sand volume and a water volume. The proposed model has the capability to generate optimal environmental data to input in other mathematical models in need of environmental data. The following enhancements were implemented: optional abstraction levels of the hydrodynamic behavior, morphological formation of underwater ripples under unilateral currents in any direction as well as morphological formation of underwater ripples under wave current interaction, grain size distribution of the sand in every time step in the entire volume and compaction distribution in every time step in the entire sediment volume. The proposed cellular automata model is a closed toroidal system. The toroidal approach of the model enables to build up infinite rippled surfaces by using the generated sediment volumes as tiles; this solves boundary problems in for example acoustic models. Using the fractal properties of the sand ripples, infinite surfaces containing rippled dunes can be generated

Geological and morphological setting of 2778 methane seeps in the Dnepr paleo-delta, northwestern Black Sea

The Dnepr paleo-delta area in the NW Black Sea is characterized by an abundant presence of methane seeps. During the expeditions of May–June 2003 and 2004 within the EU-funded CRIMEA project, detailed multibeam, seismic and hydro-acoustic water-column investigations were carried out to study the relation between the spatial distribution of methane seeps, sea-floor morphology and sub-surface structures.2778 new methane seeps were detected on echosounding records in an area of 1540 km2. All seeps are located in the transition zone between the continental shelf and slope, in water depths of 66 to 825 m. The integration of the different geophysical datasets clearly indicates that methane seeps are not randomly distributed in this area, but are concentrated in specific locations.The depth limit for the majority of the detected seeps is 725 m water depth, which corresponds more or less with the stability limit for pure methane hydrate at the ambient bottom temperature (8.9 °C) in this part of the Black Sea. This suggests that, where gas hydrates are stable, they play the role of buffer for the upward migration of methane gas and thus prevent seepage of methane bubbles into the water column.Higher up on the margin, gas seeps are widespread, but accurate mapping illustrates that seeps occur preferentially in association with particular morphological and sub-surface features. On the shelf, the highest concentration of seeps is found in elongated depressions (pockmarks) above the margins of filled channels. On the continental slope where no pockmarks have been observed, seepage occurs along crests of sedimentary ridges. There, seepage is focussed by a parallel-stratified sediment cover that thins out towards the ridge crests. On the slope, seepage also appears in the vicinity of canyons (bottom, flanks and margins) or near the scarps of submarine landslides where mass-wasting breaches the fine-grained sediment cover that acts as a stratigraphic seal. The seismic data show the presence of a distinct “gas front,” which has been used to map the depth of the free gas within the sea-floor sediments. The depth of this gas front is variable and locally domes up to the sea floor. Where the gas front approaches the seafloor, gas bubbles were detected in the water column. A regional map of the sub-surface depth of the gas front emphasises this “gas front-versus-seep” relationship.The integration of all data sets indicates that the spatial distribution of methane seeps in the Dnepr paleo-delta is mainly controlled by the gas-hydrate stability zone as well as by stratigraphic and sedimentary factors

Geological and morphological setting of 2778 methane seeps in the Dnepr paleo-delta, northwestern Black Sea

The Dnepr paleo-delta area in the NW Black Sea is characterized by an abundant presence of methane seeps. During the expeditions of May–June 2003 and 2004 within the EU-funded CRIMEA project, detailed multibeam, seismic and hydro-acoustic water-column investigations were carried out to study the relation between the spatial distribution of methane seeps, sea-floor morphology and sub-surface structures.2778 new methane seeps were detected on echosounding records in an area of 1540 km2. All seeps are located in the transition zone between the continental shelf and slope, in water depths of 66 to 825 m. The integration of the different geophysical datasets clearly indicates that methane seeps are not randomly distributed in this area, but are concentrated in specific locations.The depth limit for the majority of the detected seeps is 725 m water depth, which corresponds more or less with the stability limit for pure methane hydrate at the ambient bottom temperature (8.9 °C) in this part of the Black Sea. This suggests that, where gas hydrates are stable, they play the role of buffer for the upward migration of methane gas and thus prevent seepage of methane bubbles into the water column.Higher up on the margin, gas seeps are widespread, but accurate mapping illustrates that seeps occur preferentially in association with particular morphological and sub-surface features. On the shelf, the highest concentration of seeps is found in elongated depressions (pockmarks) above the margins of filled channels. On the continental slope where no pockmarks have been observed, seepage occurs along crests of sedimentary ridges. There, seepage is focussed by a parallel-stratified sediment cover that thins out towards the ridge crests. On the slope, seepage also appears in the vicinity of canyons (bottom, flanks and margins) or near the scarps of submarine landslides where mass-wasting breaches the fine-grained sediment cover that acts as a stratigraphic seal. The seismic data show the presence of a distinct “gas front,” which has been used to map the depth of the free gas within the sea-floor sediments. The depth of this gas front is variable and locally domes up to the sea floor. Where the gas front approaches the seafloor, gas bubbles were detected in the water column. A regional map of the sub-surface depth of the gas front emphasises this “gas front-versus-seep” relationship.The integration of all data sets indicates that the spatial distribution of methane seeps in the Dnepr paleo-delta is mainly controlled by the gas-hydrate stability zone as well as by stratigraphic and sedimentary factors

Continuous flushing of the bladder in rodents reduces artifacts and improves quantification in molecular imaging

In this study, we evaluated the partial volume effect (PVE) of 2-deoxy-2-[18F]fluoro-d-glucose (18F-FDG) tracer accumulation in the bladder on the positron emission tomographic (PET) image quantification in mice and rats suffering from inflammatory bowel disease. To improve the accuracy, we implemented continuous bladder flushing procedures. Female mice and rats were scanned using microPET/computed tomography (CT) at baseline and after induction of acute colitis by injecting 2,4,6-trinitrobenzene sulfonic acid (TNBS) intrarectally. During the scans, the bladder was continuously flushed in one group, whereas in the other group, no bladder flushing was performed. As a means of in vivo and ex vivo validation of the inflammation, animals also underwent colonoscopy and were sacrificed for gamma counting (subpopulation) and to score the colonic damage both micro- and macroscopically as well as biochemically. At baseline, the microPET signal in the colon of both mice and rats was significantly higher in the nonflushed group compared to the flushed group, caused by the PVE of tracer activity in the bladder. Hence, the colonoscopy and postmortem analyses showed no significant differences at baseline between the flushed and nonflushed animals. TNBS induced significant colonic inflammation, as revealed by colonoscopic and postmortem scores, which was not detected by microPET in the mice without bladder flushing, again because of spillover of bladder activity in the colonic area. MicroPET in bladder-flushed animals did reveal a significant increase in 18F-FDG uptake. Correlations between microPET and colonoscopy, macroscopy, microscopy, and myeloperoxidase yielded higher Spearman rho values in mice with continuously flushed bladders during imaging. Comparable, although somewhat less pronounced, results were shown in the rat. Continuous bladder flushing reduced image artifacts and is mandatory for accurate image quantification in the pelvic region for both mice and rats. We designed and validated experimental protocols to facilitate such.Steven Deleye, Marthe Heylen, Annemie Deiteren, Joris De Man, Sigrid Stroobants, Benedicte De Winter, and Steven Staelen