Multiple QTL for horticultural traits and quantitative resistance to Phytophthora infestans linked on Solanum habrochaites chromosome 11.

Previously, a Phytophthora infestans resistance QTL from Solanum habrochaites chromosome 11 was introgressed into cultivated tomato (S. lycopersicum). Fine mapping of this resistance QTL using near-isogenic lines (NILs) revealed some co-located QTL with undesirable effects on plant size, canopy density, and fruit size traits. Subsequently, higher-resolution mapping with sub-NILs detected multiple P. infestans resistance QTL within this 9.4-cM region of chromosome 11. In our present study, these same sub-NILs were also evaluated for 17 horticultural traits, including yield, maturity, fruit size and shape, fruit quality, and plant architecture traits in replicated field experiments over 2 years. The horticultural trait QTL originally detected by fine mapping each fractionated into two or more QTL at higher resolution. A total of 34 QTL were detected across all traits, with 14% exhibiting significant QTL × environment interactions (QTL × E). QTL for many traits were co-located, suggesting either pleiotropic effects or tight linkage among genes controlling these traits. Recombination in the pericentromeric region of the introgression between markers TG147 and At4g10050 was suppressed to approximately 29.7 Mbp per cM, relative to the genomewide average of 750 kbp per cM. The genetic architecture of many of the horticultural and P. infestans resistance traits that mapped within this chromosome 11 S. habrochaites region is complex. Complicating factors included fractionation of QTL, pleiotropy or tight linkage of QTL for multiple traits, pericentromeric chromosomal location(s), and/or QTL × E. High-resolution mapping of QTL in this region would be needed to determine which specific target QTL could be useful in breeding cultivated tomato

Snowpack Properties Vary in Response to Burn Severity Gradients in Montane Forests

Wildfires are altering ecosystems globally as they change in frequency, size, and severity. As wildfires change vegetation structure, they also alter moisture inputs and energy fluxes which influence snowpack and hydrology. In unburned forests, snow has been shown to accumulate more in small clearings or in stands with low to moderate forest densities. Here we investigate whether peak snowpack varies with burn severity or percent overstory tree mortality post-fire in a mid-latitude, subalpine forest. We found that peak snowpack across the burn severity gradients increased 15% in snow-water equivalence (SWE) and 17% in depth for every 20% increase in overstory tree mortality due to burn severity. Snowpack quantity varied greatly between the two winter seasons sampled in this study with 114% more snow in 2016 versus 2015, yet the effect of burn severity on snowpack remained consistent. These data support previous studies showing increases in peak snow depth and SWE in burned forests but for the first time provides novel insights into how snow depth and SWE change as a function of burn severity. We conclude that changes not only in the frequency and size of wildfires, but also in the severity, can alter peak snow depth and SWE, with important potential implications for watershed hydrology

Quaking Aspen in Utah: Integrating Recent Science with Management

Quaking aspen is widely regarded as a key resource for humans, livestock, and wildlife with these values often competing with each other, leading to overuse of aspen in some locations and declines. We review trends in aspen science and management, particularly in Utah. Historically, research conducted here holds a prestigious place in international aspen circles. We highlight recent studies continuing the tradition to keep rangeland managers informed of important developments, focusing on aspen functional types, historical cover change and climate warming, ungulate herbivory, and disturbance interactions

Algorithms to automatically quantify the geometric similarity of anatomical surfaces

We describe new approaches for distances between pairs of 2-dimensional surfaces (embedded in 3-dimensional space) that use local structures and global information contained in inter-structure geometric relationships. We present algorithms to automatically determine these distances as well as geometric correspondences. This is motivated by the aspiration of students of natural science to understand the continuity of form that unites the diversity of life. At present, scientists using physical traits to study evolutionary relationships among living and extinct animals analyze data extracted from carefully defined anatomical correspondence points (landmarks). Identifying and recording these landmarks is time consuming and can be done accurately only by trained morphologists. This renders these studies inaccessible to non-morphologists, and causes phenomics to lag behind genomics in elucidating evolutionary patterns. Unlike other algorithms presented for morphological correspondences our approach does not require any preliminary marking of special features or landmarks by the user. It also differs from other seminal work in computational geometry in that our algorithms are polynomial in nature and thus faster, making pairwise comparisons feasible for significantly larger numbers of digitized surfaces. We illustrate our approach using three datasets representing teeth and different bones of primates and humans, and show that it leads to highly accurate results.Comment: Changes with respect to v1, v2: an Erratum was added, correcting the references for one of the three datasets. Note that the datasets and code for this paper can be obtained from the Data Conservancy (see Download column on v1, v2

Facilitation Differentially Affects Competitive Responses of Aspen and Subalpine Fir Through Stages of Stand Development

Spatial interactions between trees influence forest community succession. The objective of this study was to investigate how shifts in forest composition and proximity between tree species affect stand development over time in mixed forest systems. At six locations across the Fishlake National Forest, Utah, USA, in stands where facilitation has been documented previously, tree-ring samples were collected from aspen and subalpine fir trees. Basal area increment was calculated to characterize the effects of the proximity of overstory trees on multidecadal growth responses of aspen and subalpine fir in aspen-dominant and mixed aspen–conifer stands. Subalpine fir seedlings were established next to aspen (within 10 cm) when aspen was between 15 and 120 years old with a mean age of 60 years. Aspen and subalpine fir growth rates were reduced with increasing conifer abundance. Aspen trees growing next to a proximate subalpine fir tree had slower growth rates over time than aspen trees growing independently. Growth rates of subalpine fir in aspen-dominated stands were similar when growing independently or near aspen trees. However, subalpine fir in conifer-dominated stands maintained higher growth rates when growing next to an aspen tree than when growing independently. The data suggest that as stand competition increases with conifer abundance, the proximity of overstory trees increases competitive exclusion of aspen while having a beneficial growth effect on subalpine fir. These results underscore the importance of maintaining natural fire regimes in forest systems that keep competitive interactions in balance

Using Remote Sensing and Detection of Early Season Invasives (DESI) to Analyze the Temporal Dynamics of Invasive Cheatgrass (Bromus tectorum)

The invasion of exotic annual grasses during the last century has transformed plant habitats and communities worldwide. Cheatgrass (Bromus tectorum) is a winter annual grass that has invaded over 100 million acres of the western United States (Pellant and Hall, 1994. Pellant, 1996). Cheatgrass quickly utilizes available resources especially after a disturbance to the landscape. A major impact of invasion is the increased frequency in fires (D’Antonio and Vitousek, 1992). As cheatgrass is highly successful at invading open and disturbed landscapes at a rapid pace it increases the frequency and severity of fires in arid landscapes (Brooks, 2005). Cheatgrass’ prolific seed production and flammability allows it to competitively exclude native plant species (Seabloom et al., 2003). The successful life strategy of cheatgrass gives a unique spectral image reflectance that can allow the use of remote sensing platforms to track and locate invasions

Flexibility in Animal Signals Facilitates Adaptation to Rapidly Changing Environments

Charles Darwin posited that secondary sexual characteristics result from competition to attract mates. In male songbirds, specialized vocalizations represent secondary sexual characteristics of particular importance because females prefer songs at specific frequencies, amplitudes, and duration. For birds living in human-dominated landscapes, historic selection for song characteristics that convey fitness may compete with novel selective pressures from anthropogenic noise. Here we show that black-capped chickadees (Poecile atricapillus) use shorter, higher-frequency songs when traffic noise is high, and longer, lower-frequency songs when noise abates. We suggest that chickadees balance opposing selective pressures by use low-frequency songs to preserve vocal characteristics of dominance that repel competitors and attract females, and high frequency songs to increase song transmission when their environment is noisy. The remarkable vocal flexibility exhibited by chickadees may be one reason that they thrive in urban environments, and such flexibility may also support subsequent genetic adaptation to an increasingly urbanized world

I Want My Lulu / music by St. Clair Karl; words by Lev Dockstader

Cover: photo of Lew. Dockstader in blackface; A Disturbance in Coontown; Publisher: W. B. Gray and Co. (New York)https://egrove.olemiss.edu/sharris_a/1031/thumbnail.jp

Using Hotspot Analysis and Detection of Early Season Invasives (DESI) to analyze the temporal and spatial dynamics of invasive cheatgrass (Bromus tectorum).

The invasion of exotic annual grasses during the last century has transformed plant habitats and communities worldwide. Cheatgrass (Bromus tectorum) is a winter annual grass that has invaded over 100 million acres of the western United States (Pellant and Hall, 1994. Pellant, 1996). Cheatgrass quickly utilizes available resources especially after a disturbance to the landscape. A major impact of invasion is the increased frequency in fires (D’Antonio and Vitousek, 1992). As cheatgrass is highly successful at invading open and disturbed landscapes at a rapid pace it increases the frequency and severity of fires in arid landscapes (Brooks, 2005). Cheatgrass’ prolific seed production and flammability allows it to competitively exclude native plant species (Seabloom et al., 2003). The successful life strategy of cheatgrass gives a unique spectral image reflectance that can allow the use of remote sensing platforms to track and locate invasions

Childhood adversity subtypes and depressive symptoms in early and late adolescence.

This is the final version of the article. It first appeared from Cambridge University Press via http://dx.doi.org/10.1017/S0954579414000625Within a longitudinal study of 1,005 adolescents, we investigated how exposure to childhood psychosocial adversities was associated with the emergence of depressive symptoms between 14 and 17 years of age. The cohort was classified into four empirically determined adversity subtypes for two age periods in childhood (0-5 and 6-11 years). One subtype reflects normative/optimal family environments (n = 692, 69%), while the other three subtypes reflect differential suboptimal family environments (aberrant parenting: n = 71, 7%; discordant: n = 185, 18%; and hazardous: n = 57, 6%). Parent-rated child temperament at 14 years and adolescent self-reported recent negative life events in early and late adolescence were included in models implementing path analysis. There were gender-differentiated associations between childhood adversity subtypes and adolescent depressive symptoms. The discordant and hazardous subtypes were associated with elevated depressive symptoms in both genders but the aberrant parenting subtype only so in girls. Across adolescence the associations between early childhood adversity and depressive symptoms diminished for boys but remained for girls. Emotional temperament was also associated with depressive symptoms in both genders, while proximal negative life events related to depressive symptoms in girls only. There may be neurodevelopmental factors that emerge in adolescence that reduce depressogenic symptoms in boys but increase such formation in girls.This work was supported by a Wellcome Trust programme grant (Grant 74296) for the ROOTS data collection, and the NIHR Collaboration for Leadership in Applied Health Research and Care (CLAHRC; Grant RNAG/186) for Cambridgeshire and Peterborough for data analysis and manuscript preparation. The second author's (T.C.) contribution was partially supported by a Department of Health Career Scientist Award (Public Mental Health). We thank Matthew Owens, Rosie Abbott, Paul Wilkinson, and Jenny Gibson for informative discussions and suggestions throughout manuscript preparation