Greener One-pot Synthesis of Chromeno Oxazin and Oxazin Quinoline Derivatives and their Antibacterial Activity

An efficient green method for the synthesis of oxazino quinoline-2-amine derivatives, oxazino quinoline derivatives and chromeno oxazin-5-one derivatives have been synthesized through cyclization of aromatic aldehyde, ammonium acetate, substituted amides and 8-hydroxy-quinoline or 4-hydroxy coumarin by one-pot condensation method is described. The synthesized compounds are characterized by FT-IR, 1H NMR and MASS spectral techniques and are screened further for biological activities against Escherichia coli, Pseudomonas aeruginosa, Staphylococcus aureus and Bacillus subtilis using cup plate method and disc diffusion method

Assessment of different methods of rice (Oryza sativa. L) cultivation affecting growth parameters, soil chemical, biological, and microbiological properties, water saving, and grain yield in rice–rice system

Field experiments were conducted at DRR farm located at ICRISAT, Patancheru, in sandy clay loam soils during four seasons, Kharif 2008, Rabi 2008–2009, Kharif 2009 and Rabi 2009–2010, to investigate growth parameters, water-saving potential, root characteristics, chemical, biological, and microbial properties of rhizosphere soil, and grain yield of rice (Oryza sativa L.) by comparing the plants grown with system of rice intensification (SRI) methods, with organic or organic + inorganic fertilization, against current recommended best management practices (BMP). All the growth parameters including plant height, effective tillers (10–45 %), panicle length, dry matter, root dry weight (24–57 %), and root volume (10–66 %) were found to be significantly higher with in SRI-organic + inorganic over BMP. With SRI-organic fertilization, growth parameters showed inconsistent results; however, root dry weight (3–77 %) and root volume (31–162 %) were found significantly superior compared to BMP. Grain yield was found significantly higher in SRI-organic + inorganic (12–23 and 4–35 % in the Kharif and Rabi seasons, respectively), while with SRI-organic management, yield was found higher (4–34 %) only in the Rabi seasons compared to BMP. An average of 31 and 37 % of irrigation water were saved during Kharif and Rabi seasons, respectively, with both SRI methods of rice cultivation compared to BMP. Further, total nitrogen, organic carbon%, soil dehydrogenase, microbial biomass carbon, total bacteria, fungi, and actinomycetes were found higher in the two SRI plots in comparison to BMP. It is concluded that SRI practices create favorable conditions for beneficial soil microbes to prosper, save irrigation water, and increase grain yield

Enteric Neurospheres Are Not Specific to Neural Crest Cultures: Implications for Neural Stem Cell Therapies

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited

SRI-A Method for Sustainable Intensification of Rice Production with Enhanced Water Productivity

Climate change induced higher temperatures will increase crops’ water requirements. Every 10°C increase in mean temperature, results in 7% decline in the yield of rice crop. Hence, there is a need to develop water saving technologies in rice which consumes more than 50% of the total irrigation water in agriculture. System of Rice Intensification (SRI) is one such water saving rice production technology. Experiments were conducted at different locations in India including research farm of Directorate of Rice Research (DRR), Hyderabad, during 2005-10 to assess the potential of SRI in comparison to normal transplanting/Standard Planting (NTP/SP) under flooded condition. SRI recorded higher grain yield (6 to 65% over NTP) at majority of locations. Long term studies clearly indicated that grain yield was significantly higher (12-23% and 4-35% over NTP in Kharif and Rabi seasons, respectively) in SRI (with organic+inorganic fertilizers) while the SRI (with100% organic manures), recorded higher yield (4-34%) over NTP only in the Rabi seasons. Even though, SRI resulted in higher productivity, the available nutrient status in soil was marginally higher (10, 42 and 13% over NTP for N, P and K, respectively) at the end of four seasons. There was a reduction in the incidence of pests in SRI and the relative abundance of plant parasitic nematodes was low in SRI as compared to the NTP. About 31% and 37% saving in irrigation water was observed during Kharif and Rabi seasons, respectively in both methods of SRI cultivation over NTP. SRI performed well and consistently reduced requirement of inputs such as seed and water in different soil conditions. SRI method, using less water for rice production can help in overcoming water shortage in future and it can also make water available for growing other crops thus promoting crop diversificatio

Establishment and maintenance of decentralized sweet sorghum crushing-cumsyrup making unit.

In the light of environmental concerns associated with fossil fuel use and the increased demand for energy in different counties, bio-fuels research and development has come to center stage. Sweet sorghum is a SMART crop with triple product benefit - food, feed and fuel. It is a good candidate for commercial ethanol production with potential opportunities for benefiting the dryland farmers from the emerging bio-fuel markets. The commercial ethanol production from sweet sorghum requires feedstock supplies for longer periods in a year. ICRISAT (International Crops Research Institute for the Semi-Arid Crops) and DSR (Directorate of Sorghum Research, Rajendranagar, AP, India) and other partners are working on supply chain management and addressing other issues in the sweet sorghum ethanol value chain. Principally, sweet sorghum supply chain involves centralized and decentralized models. Under centralized model farmers supply the sweet sorghum stalks directly to the distillery where as in decentralized model farmers supply stalks to Decentralized Crushing-Syrup Making Unit (DCU) located in the village it self. These stalks are crushed at the DCU and the sweet juice is boiled to produce concentrated syrup that can be stored for more than 9 months and used for ethanol production, particularly in the off-season augmenting the feedstock supply to the distillery. Use of DCU for crushing and syrup production at village is a new idea and there is no publication available on the requirements for establishment of a DCU and its maintenance. In this bulletin, attempts have been made to briefly describe the experiences of ICRISAT and partners in establishment and maintenance of DCU covering all the aspects of DCU, from selection of site for its establishment, logistical requirements, plant and machinery, operation and maintenance of DCU and its role in sweet sorghum supply chain management

Sweet Sorghum Stalk Supply Chain Management: Decentralized Crushing Cum-Syrup Making Unit Information Bulletin no. 90

In the climate of environmental concerns associated with fossil fuel use and the increased demand for energy in different counties, biofuel research and development has come to center stage. Sweet sorghum is a SMART crop with triple product benefits - food, feed and fuel. It is a good candidate for commercial ethanol production with potential opportunities for benefiting the poor dryland farmers through the emerging biofuel markets. Commercial ethanol production from sweet sorghum requires feedstock supplies for the long period of a year. ICRISAT (International Crops Research Institute for the Semi-Arid Tropics) with Rusni distillery Pvt. Ltd. and other partners are working on supply chain management and addressing other issues in the sweet sorghum ethanol value chain. Principally, the sweet sorghum supply chain involves centralized and decentralized models. Under the centralized model, farmers supply the sweet sorghum stalks directly to the distillery, whereas in the decentralized model, farmers supply stalks to the Decentralized Crushing-Syrup Making Unit (DCU) located within the village where the crop is grown. The stalks are crushed at the DCU and the sweet juice is boiled to produce concentrated syrup that can be stored for more than 2 years at room temperature, and which is used for ethanol production, particularly in the off-season. This serves to augment the feedstock supply to the distillery. Use of the DCU for crushing and syrup production at the village level is a new idea and there is as yet no publication available on the requirements for establishment of a DCU and its management. In this bulletin, an attempt is made to briefly describe the experiences of ICRISAT and partners in the establishment and maintenance of a DCU, covering all the aspects from selection of site for its establishment, logistical requirements, plant and machinery, operation and management, economics of crushing sweet sorghum and its role in sweet sorghum supply chain managemen

A La Autoantigen Homologue Is Required for the Internal Ribosome Entry Site Mediated Translation of Giardiavirus

Translation of Giardiavirus (GLV) mRNA is initiated at an internal ribosome entry site (IRES) in the viral transcript. The IRES localizes to a downstream portion of 5′ untranslated region (UTR) and a part of the early downstream coding region of the transcript. Recent studies indicated that the IRES does not require a pre-initiation complex to initiate translation but may directly recruit the small ribosome subunit with the help of a number of trans-activating protein factors. A La autoantigen homologue in the viral host Giardia lamblia, GlLa, was proposed as one of the potential trans-activating factors based on its specific binding to GLV-IRES in vitro. In this study, we further elucidated the functional role of GlLa in GLV-IRES mediated translation in Giardia by knocking down GlLa with antisense morpholino oligo, which resulted in a reduction of GLV-IRES activity by 40%. An over-expression of GlLa in Giardia moderately stimulated GLV-IRES activity by 20%. A yeast inhibitory RNA (IRNA), known to bind mammalian and yeast La autoantigen and inhibit Poliovirus and Hepatitis C virus IRES activities in vitro and in vivo, was also found to bind to GlLa protein in vitro and inhibited GLV-IRES function in vivo. The C-terminal domain of La autoantigen interferes with the dimerization of La and inhibits its function. An over-expression of the C-terminal domain (200–348aa) of GlLa in Giardia showed a dominant-negative effect on GLV-IRES activity, suggesting a potential inhibition of GlLa dimerization. HA tagged GlLa protein was detected mainly in the cytoplasm of Giardia, thus supporting a primary role of GlLa in translation initiation in Giardiavirus

Activation and discovery of earth-abundant metal catalysts using sodium tert-butoxide

First-row, earth-abundant metals offer an inexpensive and sustainable alternative to precious-metal catalysts. As such, iron and cobalt catalysts have garnered interest as replacements for alkene and alkyne hydrofunctionalization reactions. However, these have required the use of air- and moisture-sensitive catalysts and reagents, limiting both adoption by the non-expert as well as applicability, particularly in industrial settings. Here, we report a simple method for the use of earth-abundant metal catalysts by general activation with sodium tert-butoxide. Using only robust air- and moisture-stable reagents and pre-catalysts, both known and, significantly, novel catalytic activities have been successfully achieved, covering hydrosilylation, hydroboration, hydrovinylation, hydrogenation and [2π+2π] alkene cycloaddition. This activation method allows for the easy use of earth-abundant metals, including iron, cobalt, nickel and manganese, and represents a generic platform for the discovery and application of non-precious metal catalysis

IL28B genetic variations are associated with high sustained virological response (SVR) of interferon-α plus ribavirin therapy in Taiwanese chronic HCV infection

Chronic hepatitis C virus (HCV) infection patients exhibit different sustained virological responses (SVRs) following the treatment with pegylated interferon-α (IFN-α) and ribavirin. Genome-wide association studies consistently linked SVR of IFN-α-based therapy to the IL28B single-nucleotide polymorphisms (SNPs) on chromosome 19q.13 in various populations. This study was undertaken to investigate the association of IL28B SNPs with SVR in a cohort of Taiwanese chronic HCV patients. Ten SNPs of IL28B were genotyped in 728 chronic HCV patients and 960 healthy controls. Genotype distributions, allele frequencies and haplotypes were tested for SVR and susceptibility in Taiwanese chronic HCV patients. Non-genotype 1 infection (adjusted P=3.3 × 10−12, odds ratio (OR) 0.179; 95% confidence interval (CI): 0.110–0.290) and low HCV viral load (<400 000 IU ml–1) (adjusted P=3.5 × 10−9, OR 0.299; 95% CI: 0.200–0.446) were two major factors identified for high SVR. Notably, eight IL28B SNPs including previously described disease-associated SNPs (Trend test P=0.005) were significantly associated with SVR. Our data indicate that IL28B polymorphisms are the essential contributing factors for high SVR in Taiwanese chronic HCV patients. Combination of virus genotyping and host genetic data may be used to select the optimal treatment regimes in IFN-based therapy

Dopamine Receptor Activation Increases HIV Entry into Primary Human Macrophages

Macrophages are the primary cell type infected with HIV in the central nervous system, and infection of these cells is a major component in the development of neuropathogenesis and HIV-associated neurocognitive disorders. Within the brains of drug abusers, macrophages are exposed to increased levels of dopamine, a neurotransmitter that mediates the addictive and reinforcing effects of drugs of abuse such as cocaine and methamphetamine. In this study we examined the effects of dopamine on HIV entry into primary human macrophages. Exposure to dopamine during infection increased the entry of R5 tropic HIV into macrophages, irrespective of the concentration of the viral inoculum. The entry pathway affected was CCR5 dependent, as antagonizing CCR5 with the small molecule inhibitor TAK779 completely blocked entry. The effect was dose-dependent and had a steep threshold, only occurring above 108 M dopamine. The dopamine-mediated increase in entry required dopamine receptor activation, as it was abrogated by the pan-dopamine receptor antagonist flupenthixol, and could be mediated through both subtypes of dopamine receptors. These findings indicate that the effects of dopamine on macrophages may have a significant impact on HIV pathogenesis. They also suggest that drug-induced increases in CNS dopamine may be a common mechanism by which drugs of abuse with distinct modes of action exacerbate neuroinflammation and contribute to HIV-associated neurocognitive disorders in infected drug abusers